6-26373540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373540
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373540
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.811+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.620C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.570+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.868+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.216C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.937+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.937+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.307+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.351C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.937+16C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.937+16C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-26373551-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373551
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373551
    reference: chr 6
allele count: 69
allele frequency: 5.684158497405058e-4
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.811+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.570+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.631A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.362A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.307+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.937+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.937+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.937+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.227A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.937+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.868+27A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26573
  bin: 9.75e1
  variant carriers: 69
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-26373563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373563
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373563
    reference: chr 6
allele count: 5
allele frequency: 4.119226903494752e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.570+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.811+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.937+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.239C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.937+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.937+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.374C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.868+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.643C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.307+39C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.937+39C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-26373570-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373570
    reference: chr 6
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.381C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.650C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.246C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-45C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-45C>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

6-26373570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373570
    reference: chr 6
allele count: 20
allele frequency: 1.647717910693689e-4
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.246C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.650C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.381C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-45C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-45C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-26373579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373579
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373579
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.659C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.255C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.390C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-36C>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-36C>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-26373594-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373594
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373594
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.405T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.270T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.674T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-21T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-21T>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-26373596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373596
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373596
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.407C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.676C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.272C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-19C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-19C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

6-26373599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373599
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373599
    reference: chr 6
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.275G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.679G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.410G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-16G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-16G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26508
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

6-26373602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373602
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373602
    reference: chr 6
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.278C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.682C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.413C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-13C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-13C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

6-26373603-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373603
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373603
    reference: chr 6
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.938-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.683A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.308-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.571-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.938-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.938-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.869-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.812-12A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.279A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.414A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.938-12A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-26373619-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373619
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373620
    reference: chr 6
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.706dupA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.823dupA
  hgvsp: ENSP00000442687.1:p.Ile275AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.319dupA
  hgvsp: ENSP00000474533.1:p.Ile107AsnfsTer7
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.437dupA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.949dupA
  hgvsp: ENSP00000366937.2:p.Ile317AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.880dupA
  hgvsp: ENSP00000380140.3:p.Ile294AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.949dupA
  hgvsp: ENSP00000348751.2:p.Ile317AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.949dupA
  hgvsp: ENSP00000380152.1:p.Ile317AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.949dupA
  hgvsp: ENSP00000432138.1:p.Ile317AsnfsTer16
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.302dupA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.582dupA
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile317AsnfsTer16
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

6-26373620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373620
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373620
    reference: chr 6
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.943A>G
  hgvsp: ENSP00000432138.1:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.874A>G
  hgvsp: ENSP00000380140.3:p.Lys292Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.943A>G
  hgvsp: ENSP00000366937.2:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.943A>G
  hgvsp: ENSP00000380152.1:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.313A>G
  hgvsp: ENSP00000474533.1:p.Lys105Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.296A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.943A>G
  hgvsp: ENSP00000348751.2:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.576A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.431A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.700A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.817A>G
  hgvsp: ENSP00000442687.1:p.Lys273Glu
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys315Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-26373625-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373625
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373625
    reference: chr 6
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.948A>C
  hgvsp: ENSP00000348751.2:p.Lys316Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.436A>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.948A>C
  hgvsp: ENSP00000380152.1:p.Lys316Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.318A>C
  hgvsp: ENSP00000474533.1:p.Lys106Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.948A>C
  hgvsp: ENSP00000432138.1:p.Lys316Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.705A>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.301A>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.581A>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.948A>C
  hgvsp: ENSP00000366937.2:p.Lys316Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.879A>C
  hgvsp: ENSP00000380140.3:p.Lys293Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.822A>C
  hgvsp: ENSP00000442687.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys316Asn
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

6-26373633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373633
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373633
    reference: chr 6
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.713A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.589A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.956A>G
  hgvsp: ENSP00000348751.2:p.Tyr319Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.956A>G
  hgvsp: ENSP00000432138.1:p.Tyr319Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.830A>G
  hgvsp: ENSP00000442687.1:p.Tyr277Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.956A>G
  hgvsp: ENSP00000366937.2:p.Tyr319Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.887A>G
  hgvsp: ENSP00000380140.3:p.Tyr296Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.444A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.956A>G
  hgvsp: ENSP00000380152.1:p.Tyr319Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.326A>G
  hgvsp: ENSP00000474533.1:p.Tyr109Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.309A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr319Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

6-26373641-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373641
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373641
    reference: chr 6
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895C>G
  hgvsp: ENSP00000380140.3:p.Arg299Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838C>G
  hgvsp: ENSP00000442687.1:p.Arg280Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964C>G
  hgvsp: ENSP00000366937.2:p.Arg322Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964C>G
  hgvsp: ENSP00000348751.2:p.Arg322Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964C>G
  hgvsp: ENSP00000380152.1:p.Arg322Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.721C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.334C>G
  hgvsp: ENSP00000474533.1:p.Arg112Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964C>G
  hgvsp: ENSP00000432138.1:p.Arg322Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.452C>G
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg322Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

6-26373641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373641
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373641
    reference: chr 6
allele count: 21
allele frequency: 1.735938894950898e-4
allele num: 120972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895C>T
  hgvsp: ENSP00000380140.3:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964C>T
  hgvsp: ENSP00000380152.1:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964C>T
  hgvsp: ENSP00000348751.2:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964C>T
  hgvsp: ENSP00000366937.2:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.721C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.334C>T
  hgvsp: ENSP00000474533.1:p.Arg112Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838C>T
  hgvsp: ENSP00000442687.1:p.Arg280Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964C>T
  hgvsp: ENSP00000432138.1:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.452C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg322Cys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

6-26373642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373642
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373642
    reference: chr 6
allele count: 32
allele frequency: 2.646202699126753e-4
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.722G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.335G>A
  hgvsp: ENSP00000474533.1:p.Arg112His
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.453G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+1G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+1G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
hgvs: c.964+1G>A
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-26373648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373648
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373648
    reference: chr 6
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.728G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.341G>A
  hgvsp: ENSP00000474533.1:p.Trp114Ter
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.459G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+7G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+7G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp114Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-26373655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373655
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373655
    reference: chr 6
allele count: 9
allele frequency: 7.467268473192506e-5
allele num: 120526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.466A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.735A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.348A>G
  hgvsp: ENSP00000474533.1:p.Ter116TrpextTer4
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+14A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+14A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ter116TrpextTer4
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-26373668-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373668
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373668
    reference: chr 6
allele count: 1
allele frequency: 8.329307501374335e-6
allele num: 120058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.*13A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.748A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.479A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+27A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+27A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-26373678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373678
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373678
    reference: chr 6
allele count: 10174
allele frequency: 8.507969426836814e-2
allele num: 119582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.758G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.*23G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+37G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.489G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+37G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 4.25e1
  variant carriers: 647
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 9.75e1
  variant carriers: 1357
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 5.75e1
  variant carriers: 967
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 2.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 759
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 5.25e1
  variant carriers: 961
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 6.25e1
  variant carriers: 858
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 3.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 4.75e1
  variant carriers: 831
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 7
num of homozygotes: 503
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-26373681-ACTCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373681
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373677
    reference: chr 6
allele count: 89
allele frequency: 7.468071894876399e-4
allele num: 119174
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+47_964+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.*33_*36delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.499_502delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+47_597+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+47_317+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+47_964+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+47_895+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+47_838+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+47_964+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.768_771delCTCT
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+47_964+50delCTCT
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9950
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5305
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: ACTCT
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-26373684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26373684
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26373684
    reference: chr 6
allele count: 1
allele frequency: 8.42800795603951e-6
allele num: 118652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000474533
  ensembl transcript: ENST00000527639
  gene symbol: BTN3A2
  hgvsc: ENST00000527639.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.838+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.964+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.964+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.964+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.764C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.597+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.317+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.964+43C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000531055
  gene symbol: BTN3A2
  hgvsc: ENST00000531055.1:n.495C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.895+43C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

6-26374507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374507
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374507
    reference: chr 6
allele count: 41
allele frequency: 3.391176324626557e-4
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1587C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-48C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-48C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12431
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

6-26374518-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374518
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374518
    reference: chr 6
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-37G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1598G>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-37G>C
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

6-26374522-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374522
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374522
    reference: chr 6
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1602T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-33T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-33T>C
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

6-26374523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374523
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374523
    reference: chr 6
allele count: 4
allele frequency: 3.3000033000033e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1603C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-32C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-32C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13297
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-26374524-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374524
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374524
    reference: chr 6
allele count: 15
allele frequency: 1.237276671560783e-4
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1604T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-31T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-31T>C
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

6-26374526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374526
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374526
    reference: chr 6
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1606G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-29G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-29G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

6-26374532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374532
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374532
    reference: chr 6
allele count: 139
allele frequency: 1.146051481621951e-3
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1612C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-23C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-23C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-26374536-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374536
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374536
    reference: chr 6
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1616T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-19T>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-19T>G
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

6-26374540-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374540
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374540
    reference: chr 6
allele count: 6
allele frequency: 4.945843018942579e-5
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1620T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-15T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-15T>C
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

6-26374546-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374546
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374544
    reference: chr 6
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-8_965-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-8_965-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1627_1628delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-8_965-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-8_965-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-8_896-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-8_839-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-8_318-7delCA
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-8_598-7delCA
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.965-8_965-7delCA
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: TCA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

6-26374549-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374549
    reference: chr 6
allele count: 16512
allele frequency: 1.361073559959115e-1
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.839-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.896-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.965-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.598-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.318-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1629T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.965-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.965-6T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.965-6T>C
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 6.25e1
  variant carriers: 1211
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 4.75e1
  variant carriers: 1743
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 9.75e1
  variant carriers: 2061
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 2.75e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 1012
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.75e1
  variant carriers: 1483
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 5.25e1
  variant carriers: 1731
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 2.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 4.25e1
  variant carriers: 1499
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 3.75e1
  variant carriers: 1086
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 10677
  bin: 3.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 7.25e1
  variant carriers: 728
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 5
hgvs: c.965-6T>C
num of homozygotes: 1315
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-26374564-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374564
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374564
    reference: chr 6
allele count: 4
allele frequency: 3.295653033648617e-5
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.848A>G
  hgvsp: ENSP00000442687.1:p.Glu283Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.974A>G
  hgvsp: ENSP00000432138.1:p.Glu325Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.974A>G
  hgvsp: ENSP00000348751.2:p.Glu325Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.974A>G
  hgvsp: ENSP00000380152.1:p.Glu325Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.974A>G
  hgvsp: ENSP00000366937.2:p.Glu325Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.327A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.905A>G
  hgvsp: ENSP00000380140.3:p.Glu302Gly
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1644A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.607A>G
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu325Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

6-26374570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374570
    reference: chr 6
allele count: 4
allele frequency: 3.295761650517435e-5
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.980C>G
  hgvsp: ENSP00000432138.1:p.Ser327Trp
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.854C>G
  hgvsp: ENSP00000442687.1:p.Ser285Trp
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.333C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.980C>G
  hgvsp: ENSP00000380152.1:p.Ser327Trp
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.980C>G
  hgvsp: ENSP00000348751.2:p.Ser327Trp
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.911C>G
  hgvsp: ENSP00000380140.3:p.Ser304Trp
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1650C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.613C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.980C>G
  hgvsp: ENSP00000366937.2:p.Ser327Trp
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser327Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

6-26374571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374571
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374571
    reference: chr 6
allele count: 621
allele frequency: 5.116501334739479e-3
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1651G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.855G>A
  hgvsp: ENST00000508906.2:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.981G>A
  hgvsp: ENST00000396948.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.981G>A
  hgvsp: ENST00000527422.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.981G>A
  hgvsp: ENST00000356386.2:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.981G>A
  hgvsp: ENST00000377708.2:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.912G>A
  hgvsp: ENST00000396934.3:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.334G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.614G>A
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 5.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14017
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 9.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 8666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser327Ser
num of homozygotes: 14
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

6-26374574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374574
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374574
    reference: chr 6
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.984C>T
  hgvsp: ENST00000527422.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.915C>T
  hgvsp: ENST00000396934.3:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.984C>T
  hgvsp: ENST00000356386.2:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.337C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.984C>T
  hgvsp: ENST00000396948.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.858C>T
  hgvsp: ENST00000508906.2:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.617C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1654C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.984C>T
  hgvsp: ENST00000377708.2:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14987
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser328Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-26374575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374575
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374575
    reference: chr 6
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.985G>A
  hgvsp: ENSP00000380152.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.985G>A
  hgvsp: ENSP00000432138.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.985G>A
  hgvsp: ENSP00000366937.2:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.618G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.916G>A
  hgvsp: ENSP00000380140.3:p.Asp306Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.859G>A
  hgvsp: ENSP00000442687.1:p.Asp287Asn
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1655G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.338G>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.985G>A
  hgvsp: ENSP00000348751.2:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp329Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

6-26374582-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374582
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374582
    reference: chr 6
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.992A>G
  hgvsp: ENSP00000348751.2:p.Asn331Ser
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.992A>G
  hgvsp: ENSP00000432138.1:p.Asn331Ser
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.992A>G
  hgvsp: ENSP00000366937.2:p.Asn331Ser
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.992A>G
  hgvsp: ENSP00000380152.1:p.Asn331Ser
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.923A>G
  hgvsp: ENSP00000380140.3:p.Asn308Ser
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.345A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1662A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.625A>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.866A>G
  hgvsp: ENSP00000442687.1:p.Asn289Ser
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn331Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-26374583-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374583
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374583
    reference: chr 6
allele count: 5
allele frequency: 4.119498409873614e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.346T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.993T>C
  hgvsp: ENST00000396948.1:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.993T>C
  hgvsp: ENST00000527422.1:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.924T>C
  hgvsp: ENST00000396934.3:c.924T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.867T>C
  hgvsp: ENST00000508906.2:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.626T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1663T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.993T>C
  hgvsp: ENST00000356386.2:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.993T>C
  hgvsp: ENST00000377708.2:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn331Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

6-26374591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374591
    reference: chr 6
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1671C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.1001C>T
  hgvsp: ENSP00000380152.1:p.Ala334Val
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.1001C>T
  hgvsp: ENSP00000348751.2:p.Ala334Val
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.354C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.932C>T
  hgvsp: ENSP00000380140.3:p.Ala311Val
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.1001C>T
  hgvsp: ENSP00000432138.1:p.Ala334Val
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.1001C>T
  hgvsp: ENSP00000366937.2:p.Ala334Val
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.634C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.875C>T
  hgvsp: ENSP00000442687.1:p.Ala292Val
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala334Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

6-26374598-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374598
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374598
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1678C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.361C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.*3C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.641C>G
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

6-26374600-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374600
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374600
    reference: chr 6
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1680C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.363C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000524682
  gene symbol: BTN3A2
  hgvsc: ENST00000524682.1:n.643C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/1139
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.*5C>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

6-26374621-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374621
    reference: chr 6
allele count: 15
allele frequency: 1.23627732172881e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.364+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1701T>A
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.*6+20T>A
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13979
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14964
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

6-26374639-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374639
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374639
    reference: chr 6
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1719T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.364+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.*6+38T>C
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-26374647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26374647
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26374647
    reference: chr 6
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000532294
  gene symbol: BTN3A2
  hgvsc: ENST00000532294.1:n.364+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000366937
  ensembl transcript: ENST00000377708
  gene symbol: BTN3A2
  hgvsc: ENST00000377708.2:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186470
  ensembl transcript: ENST00000604202
  gene symbol: BTN3A2
  hgvsc: ENST00000604202.1:n.1727C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000432138
  ensembl transcript: ENST00000527422
  gene symbol: BTN3A2
  hgvsc: ENST00000527422.1:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380152
  ensembl transcript: ENST00000396948
  gene symbol: BTN3A2
  hgvsc: ENST00000396948.1:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000348751
  ensembl transcript: ENST00000356386
  gene symbol: BTN3A2
  hgvsc: ENST00000356386.2:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000442687
  ensembl transcript: ENST00000508906
  gene symbol: BTN3A2
  hgvsc: ENST00000508906.2:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186470
  ensembl protein: ENSP00000380140
  ensembl transcript: ENST00000396934
  gene symbol: BTN3A2
  hgvsc: ENST00000396934.3:c.*6+46C>T
  variant of: http://identifiers.org/hgnc/1139
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

6-26384008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384008
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384008
    reference: chr 6
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.81-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+481C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-30-12C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+599C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.40-12C>T
  variant of: http://identifiers.org/hgnc/1137
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-26384012-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384012
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384012
    reference: chr 6
allele count: 6
allele frequency: 4.944131316127757e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.81-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+485A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+603A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-38A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-30-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.40-8A>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-38A>T
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-30-8A>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-26384033-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384033
    reference: chr 6
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+506G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+624G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.94G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.53G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-17G>C
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-26384034-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384034
    reference: chr 6
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.95C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.54C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+625C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+507C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

6-26384034-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384034
    reference: chr 6
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.54C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+625C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+507C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.95C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-26384048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384048
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384048
    reference: chr 6
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.68T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.109T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+639T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+521T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.-2T>C
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

6-26384060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384060
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384060
    reference: chr 6
allele count: 852
allele frequency: 7.017659462308909e-3
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.11C>T
  hgvsp: ENSP00000399308.2:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.11C>T
  hgvsp: ENSP00000418857.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.11C>T
  hgvsp: ENSP00000337117.3:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.11C>T
  hgvsp: ENSP00000417511.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+651C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+533C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.11C>T
  hgvsp: ENSP00000419451.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.11C>T
  hgvsp: ENSP00000418176.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.11C>T
  hgvsp: ENSP00000417472.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.11C>T
  hgvsp: ENSP00000349143.4:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.11C>T
  hgvsp: ENSP00000394241.2:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.11C>T
  hgvsp: ENSP00000418657.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.121C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.80C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.11C>T
  hgvsp: ENSP00000419226.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ala4Val
num of homozygotes: 13
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-26384085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384085
    reference: chr 6
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.36A>G
  hgvsp: ENST00000493275.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.36A>G
  hgvsp: ENST00000432533.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+676A>G
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.36A>G
  hgvsp: ENST00000472507.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.105A>G
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.36A>G
  hgvsp: ENST00000416795.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.36A>G
  hgvsp: ENST00000494184.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.36A>G
  hgvsp: ENST00000356709.4:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.36A>G
  hgvsp: ENST00000471116.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.146A>G
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.36A>G
  hgvsp: ENST00000483410.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+558A>G
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.36A>G
  hgvsp: ENST00000352867.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.36A>G
  hgvsp: ENST00000482536.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.36A>G
  hgvsp: ENST00000469230.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro12Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-26384088-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384088
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384088
    reference: chr 6
allele count: 21
allele frequency: 1.729733291600086e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+679C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.39C>A
  hgvsp: ENST00000352867.2:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.39C>A
  hgvsp: ENST00000493275.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.39C>A
  hgvsp: ENST00000482536.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.39C>A
  hgvsp: ENST00000416795.2:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.108C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.39C>A
  hgvsp: ENST00000472507.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.39C>A
  hgvsp: ENST00000469230.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.39C>A
  hgvsp: ENST00000494184.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.39C>A
  hgvsp: ENST00000471116.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.149C>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.39C>A
  hgvsp: ENST00000432533.2:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.39C>A
  hgvsp: ENST00000356709.4:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.39C>A
  hgvsp: ENST00000483410.1:c.39C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+561C>A
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala13Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-26384090-CCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384090
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384087
    reference: chr 6
allele count: 50
allele frequency: 4.120720631624058e-4
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.54_56delCCT
  hgvsp: ENSP00000418657.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.54_56delCCT
  hgvsp: ENSP00000418176.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.54_56delCCT
  hgvsp: ENSP00000417472.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+694_-174+696delCCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.54_56delCCT
  hgvsp: ENSP00000349143.4:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.54_56delCCT
  hgvsp: ENSP00000418857.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.54_56delCCT
  hgvsp: ENSP00000399308.2:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.54_56delCCT
  hgvsp: ENSP00000419226.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.54_56delCCT
  hgvsp: ENSP00000419451.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.54_56delCCT
  hgvsp: ENSP00000394241.2:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.123_125delCCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+576_-174+578delCCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.54_56delCCT
  hgvsp: ENSP00000417511.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.54_56delCCT
  hgvsp: ENSP00000337117.3:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.164_166delCCT
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu24del
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: CCCT
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

6-26384091-C-CCTCCTCCTCCTCCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384106
    reference: chr 6
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: CCTCCTCCTCCTCCTG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsp: ENSP00000418176.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsp: ENSP00000419451.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsp: ENSP00000417472.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsp: ENSP00000418857.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsp: ENSP00000349143.4:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsp: ENSP00000418657.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsp: ENSP00000417511.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsp: ENSP00000419226.1:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsp: ENSP00000399308.2:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsp: ENSP00000337117.3:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsp: ENSP00000394241.2:p.Leu19_Leu23dup
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu19_Leu23dup
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-26384092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384092
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384092
    reference: chr 6
allele count: 63
allele frequency: 5.208850084333763e-4
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.43C>T
  hgvsp: ENSP00000337117.3:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.43C>T
  hgvsp: ENSP00000394241.2:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.43C>T
  hgvsp: ENSP00000417511.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.43C>T
  hgvsp: ENSP00000418657.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+565C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.43C>T
  hgvsp: ENSP00000419226.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.153C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.43C>T
  hgvsp: ENSP00000349143.4:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.43C>T
  hgvsp: ENSP00000418857.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.43C>T
  hgvsp: ENSP00000419451.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.43C>T
  hgvsp: ENSP00000418176.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.43C>T
  hgvsp: ENSP00000399308.2:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+683C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.112C>T
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.43C>T
  hgvsp: ENSP00000417472.1:p.Leu15Phe
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu15Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

6-26384096-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384096
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384096
    reference: chr 6
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.47T>C
  hgvsp: ENSP00000337117.3:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.47T>C
  hgvsp: ENSP00000394241.2:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+569T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.47T>C
  hgvsp: ENSP00000419451.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.47T>C
  hgvsp: ENSP00000417472.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.47T>C
  hgvsp: ENSP00000418857.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.47T>C
  hgvsp: ENSP00000418657.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.47T>C
  hgvsp: ENSP00000349143.4:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.47T>C
  hgvsp: ENSP00000418176.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.47T>C
  hgvsp: ENSP00000417511.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.116T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.157T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+687T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.47T>C
  hgvsp: ENSP00000419226.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.47T>C
  hgvsp: ENSP00000399308.2:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu16Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

6-26384106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384106
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384106
    reference: chr 6
allele count: 1287
allele frequency: 1.068439928272564e-2
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.57G>A
  hgvsp: ENST00000432533.2:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.57G>A
  hgvsp: ENST00000494184.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.126G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.167G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.57G>A
  hgvsp: ENST00000483410.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.57G>A
  hgvsp: ENST00000352867.2:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.57G>A
  hgvsp: ENST00000471116.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.57G>A
  hgvsp: ENST00000356709.4:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.57G>A
  hgvsp: ENST00000469230.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.57G>A
  hgvsp: ENST00000493275.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+697G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.57G>A
  hgvsp: ENST00000482536.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.57G>A
  hgvsp: ENST00000416795.2:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+579G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.57G>A
  hgvsp: ENST00000472507.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 6.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11563
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
hgvs: p.Leu19Leu
num of homozygotes: 10
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

6-26384106-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384106
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384106
    reference: chr 6
allele count: 59
allele frequency: 4.898054061233978e-4
allele num: 120456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.57G>C
  hgvsp: ENST00000469230.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+697G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.57G>C
  hgvsp: ENST00000432533.2:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.57G>C
  hgvsp: ENST00000472507.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.126G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.57G>C
  hgvsp: ENST00000471116.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.167G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.57G>C
  hgvsp: ENST00000483410.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.57G>C
  hgvsp: ENST00000416795.2:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+579G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.57G>C
  hgvsp: ENST00000494184.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.57G>C
  hgvsp: ENST00000352867.2:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.57G>C
  hgvsp: ENST00000356709.4:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.57G>C
  hgvsp: ENST00000482536.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.57G>C
  hgvsp: ENST00000493275.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu19Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-26384115-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384115
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384112
    reference: chr 6
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.179_181delTCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.69_71delTCT
  hgvsp: ENSP00000418657.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.69_71delTCT
  hgvsp: ENSP00000419451.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.69_71delTCT
  hgvsp: ENSP00000349143.4:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.69_71delTCT
  hgvsp: ENSP00000394241.2:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.69_71delTCT
  hgvsp: ENSP00000337117.3:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.69_71delTCT
  hgvsp: ENSP00000417472.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.69_71delTCT
  hgvsp: ENSP00000418857.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.69_71delTCT
  hgvsp: ENSP00000399308.2:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.69_71delTCT
  hgvsp: ENSP00000417511.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.69_71delTCT
  hgvsp: ENSP00000418176.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+591_-174+593delTCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.69_71delTCT
  hgvsp: ENSP00000419226.1:p.Leu24del
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.138_140delTCT
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+709_-174+711delTCT
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu24del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: CCTT
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

6-26384118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384118
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384118
    reference: chr 6
allele count: 66
allele frequency: 5.484916479680877e-4
allele num: 120330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.69T>C
  hgvsp: ENST00000471116.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.69T>C
  hgvsp: ENST00000472507.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.69T>C
  hgvsp: ENST00000483410.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.69T>C
  hgvsp: ENST00000416795.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.138T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.69T>C
  hgvsp: ENST00000494184.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.69T>C
  hgvsp: ENST00000356709.4:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.69T>C
  hgvsp: ENST00000352867.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.69T>C
  hgvsp: ENST00000482536.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.69T>C
  hgvsp: ENST00000469230.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.69T>C
  hgvsp: ENST00000493275.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.69T>C
  hgvsp: ENST00000432533.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.179T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+709T>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+591T>C
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Leu23Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

6-26384138-T-TCTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384138
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384142
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: TCTCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.90_93dupCTCA
  hgvsp: ENSP00000419451.1:p.Glu32LeufsTer63
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.90_93dupCTCA
  hgvsp: ENSP00000418657.1:p.Val32LeufsTer31
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.90_93dupCTCA
  hgvsp: ENSP00000399308.2:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.90_93dupCTCA
  hgvsp: ENSP00000417511.1:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+730_-174+733dupCTCA
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.159_162dupCTCA
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.90_93dupCTCA
  hgvsp: ENSP00000394241.2:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.200_203dupCTCA
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.90_93dupCTCA
  hgvsp: ENSP00000418176.1:p.Gly32LeufsTer6
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.90_93dupCTCA
  hgvsp: ENSP00000417472.1:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.90_93dupCTCA
  hgvsp: ENSP00000419226.1:p.Gly32LeufsTer6
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+612_-174+615dupCTCA
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.90_93dupCTCA
  hgvsp: ENSP00000349143.4:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.90_93dupCTCA
  hgvsp: ENSP00000418857.1:p.Ala32LeufsTer11
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.90_93dupCTCA
  hgvsp: ENSP00000337117.3:p.Gly32LeufsTer6
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala32LeufsTer11
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

6-26384154-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384154
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384154
    reference: chr 6
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000394241
  ensembl transcript: ENST00000432533
  gene symbol: BTN2A2
  hgvsc: ENST00000432533.2:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+745G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.204+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000399308
  ensembl transcript: ENST00000416795
  gene symbol: BTN2A2
  hgvsc: ENST00000416795.2:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+627G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000482636
  gene symbol: BTN2A2
  hgvsc: ENST00000482636.1:n.163+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417511
  ensembl transcript: ENST00000494184
  gene symbol: BTN2A2
  hgvsc: ENST00000494184.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.94+11G>C
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-26384156-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 26384156
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 26384156
    reference: chr 6
allele count: 51
allele frequency: 4.202580879081036e-4
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418657
  ensembl transcript: ENST00000471116
  gene symbol: BTN2A2
  hgvsc: ENST00000471116.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418965
  ensembl transcript: ENST00000490025
  gene symbol: BTN2A2
  hgvsc: ENST00000490025.1:c.-174+747G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419451
  ensembl transcript: ENST00000482536
  gene symbol: BTN2A2
  hgvsc: ENST00000482536.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000337117
  ensembl transcript: ENST00000352867
  gene symbol: BTN2A2
  hgvsc: ENST00000352867.2:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418857
  ensembl transcript: ENST00000493275
  gene symbol: BTN2A2
  hgvsc: ENST00000493275.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl transcript: ENST00000467485
  gene symbol: BTN2A2
  hgvsc: ENST00000467485.1:n.204+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417676
  ensembl transcript: ENST00000482842
  gene symbol: BTN2A2
  hgvsc: ENST00000482842.1:c.-174+629G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000419226
  ensembl transcript: ENST00000472507
  gene symbol: BTN2A2
  hgvsc: ENST00000472507.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000418176
  ensembl transcript: ENST00000483410
  gene symbol: BTN2A2
  hgvsc: ENST00000483410.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000349143
  ensembl transcript: ENST00000356709
  gene symbol: BTN2A2
  hgvsc: ENST00000356709.4:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124508
  ensembl protein: ENSP00000417472
  ensembl transcript: ENST00000469230
  gene symbol: BTN2A2
  hgvsc: ENST00000469230.1:c.94+13G>A
  variant of: http://identifiers.org/hgnc/1137
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3873
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26559
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.768e1

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

FS
type: SiteQuality
SIO_000300: 5.786e0

DP
type: SiteQuality
SIO_000300: 2.843094e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.514600751241973e-3
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.095159598381537e-4
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.848873e6

VQSLOD
type: SiteQuality
SIO_000300: -2.423e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.658e0

MQ
type: SiteQuality
SIO_000300: 5.782e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 26528
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3875
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49667246237784e-5
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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SIO_000300: 3.226e0

MQRankSum
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SIO_000300: 3.9e-1

ReadPosRankSum
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SIO_000300: 6.02e-1

MQ
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SIO_000300: 5.792e1

ClippingRankSum
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SIO_000300: -6.24e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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DP
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SIO_000300: 2.841654e6

VQSLOD
type: SiteQuality
SIO_000300: -1.388e0

BaseQRankSum
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SIO_000300: -3.053e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
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MQRankSum
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FS
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SIO_000300: 0.0e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.798e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.798776831754407e-4
allele num: 66712
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African
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allele num: 10406
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East Asian
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Other
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ReadPosRankSum
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SIO_000300: 7.63e-1

FS
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BaseQRankSum
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SIO_000300: 4.74e-1

MQRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

DP
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SIO_000300: 2.842142e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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FS
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.013e0

MQRankSum
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SIO_000300: -1.902e0

VQSLOD
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SIO_000300: -1.931e0

QD
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ClippingRankSum
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SIO_000300: -2.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.839643e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66702
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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MQRankSum
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QD
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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Latino
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East Asian
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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African
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Latino
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

South Asian
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European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele num: 66680
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East Asian
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Other
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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MQRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66672
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Other
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66636
num of homozygotes: 0

African
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South Asian
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Latino
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allele frequency: 0.0e0
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MQRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66578
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African
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South Asian
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East Asian
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Latino
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Other
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European (Finnish)
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16250
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.004536850644473e-4
allele num: 66566
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European (Finnish)
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East Asian
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allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.050129645635263e-4
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.825511e6

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

MQ
type: SiteQuality
SIO_000300: 5.853e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

GenotypeDepth
all individuals: 3205
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variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

FS
type: SiteQuality
SIO_000300: 1.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.832e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -2.632e0

MQRankSum
type: SiteQuality
SIO_000300: -1.636e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e0

DP
type: SiteQuality
SIO_000300: 2.817502e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 2349
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 8.650519031141869e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

DP
type: SiteQuality
SIO_000300: 2.809391e6

VQSLOD
type: SiteQuality
SIO_000300: -2.524e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.223e0

FS
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.764e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2303
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 4989
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 26459
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variant carriers: 1

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.124e0

DP
type: SiteQuality
SIO_000300: 2.785903e6

VQSLOD
type: SiteQuality
SIO_000300: -3.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.255e1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.009e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.112e0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3203
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 34
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variant carriers: 1

GenotypeQuality
all individuals: 44
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variant carriers: 8

GenotypeQuality
all individuals: 1847
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variant carriers: 20

GenotypeQuality
all individuals: 3625
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variant carriers: 16

GenotypeQuality
all individuals: 57
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variant carriers: 3

GenotypeQuality
all individuals: 568
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GenotypeQuality
all individuals: 687
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variant carriers: 1

GenotypeQuality
all individuals: 2098
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GenotypeQuality
all individuals: 4630
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 28211
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variant carriers: 9531

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 9006
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variant carriers: 7

GenotypeQuality
all individuals: 2188
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variant carriers: 11

GenotypeQuality
all individuals: 73
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variant carriers: 12

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3762
bin: 7.75e1
variant carriers: 19

European (Finnish)
type: Population
allele count: 507
allele frequency: 7.667876588021778e-2
allele num: 6612
num of homozygotes: 18

African
type: Population
allele count: 377
allele frequency: 3.631984585741811e-2
allele num: 10380
num of homozygotes: 7

East Asian
type: Population
allele count: 719
allele frequency: 8.32561371005095e-2
allele num: 8636
num of homozygotes: 27

Latino
type: Population
allele count: 362
allele frequency: 3.13474194665743e-2
allele num: 11548
num of homozygotes: 9

South Asian
type: Population
allele count: 1448
allele frequency: 9.431995831162064e-2
allele num: 15352
num of homozygotes: 79

European (Non-Finnish)
type: Population
allele count: 6693
allele frequency: 1.011424426511923e-1
allele num: 66174
num of homozygotes: 362

Other
type: Population
allele count: 68
allele frequency: 7.727272727272727e-2
allele num: 880
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.796566e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
SIO_000300: 1.428e1

MQ
type: SiteQuality
SIO_000300: 5.85e1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
all individuals: 4454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 912
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GenotypeQuality
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GenotypeQuality
all individuals: 2484
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GenotypeQuality
all individuals: 483
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GenotypeQuality
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GenotypeQuality
all individuals: 717
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 4288
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GenotypeQuality
all individuals: 22784
bin: 9.75e1
variant carriers: 89

GenotypeQuality
all individuals: 2532
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GenotypeQuality
all individuals: 10127
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GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 81
allele frequency: 1.225119486962309e-3
allele num: 66116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15016
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.927525057825752e-4
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.293577981651376e-3
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.572832e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.534e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2486
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 177
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1053
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GenotypeQuality
all individuals: 5227
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518233990222573e-5
allele num: 65866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.039e0

QD
type: SiteQuality
SIO_000300: 1.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.558782e6

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.075e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 369
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GenotypeQuality
all individuals: 2098
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variant carriers: 0

African
type: Population
allele count: 38
allele frequency: 3.657362848893167e-3
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598752598752599e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.054e0

DP
type: SiteQuality
SIO_000300: 2.494711e6

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 18302
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 173
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.425e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

DP
type: SiteQuality
SIO_000300: 2.50787e6

QD
type: SiteQuality
SIO_000300: 1.639e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 9.835000000000001e0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

QD
type: SiteQuality
SIO_000300: 5.26e0

DP
type: SiteQuality
SIO_000300: 2.511124e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428363283147159e-4
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.719e0

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 2.512027e6

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 15767
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.786814327738363e-4
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.000360014400577e-5
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.512919e6

QD
type: SiteQuality
SIO_000300: 1.344e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 2.514563e6

MQ
type: SiteQuality
SIO_000300: 5.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.039e0

VQSLOD
type: SiteQuality
SIO_000300: -1.311e0

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.959e0

QD
type: SiteQuality
SIO_000300: 1.045e1

GenotypeQuality
all individuals: 7565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 18420
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variant carriers: 137

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.631773969430292e-4
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 9.747758015656399e-4
allele num: 66682
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 63
allele frequency: 3.820960698689956e-3
allele num: 16488
num of homozygotes: 1

Latino
type: Population
allele count: 5
allele frequency: 4.324511330219685e-4
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 2.519987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 7.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.3e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.383e0

DP
type: SiteQuality
SIO_000300: 2.519985e6

FS
type: SiteQuality
SIO_000300: 9.164999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.466e0

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 15705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2164
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GenotypeQuality
all individuals: 3149
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.324511330219685e-4
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.521037e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.99e-1

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 57
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 2165
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GenotypeQuality
all individuals: 7591
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.411e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.52192e6

QD
type: SiteQuality
SIO_000300: 2.203e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

GenotypeQuality
all individuals: 14091
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 6373
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3208
bin: 8.25e1
variant carriers: 20

GenotypeQuality
all individuals: 3937
bin: 7.75e1
variant carriers: 27

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 26410
bin: 9.75e1
variant carriers: 15002

GenotypeQuality
all individuals: 1422
bin: 8.75e1
variant carriers: 22

GenotypeQuality
all individuals: 2749
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2037
bin: 9.25e1
variant carriers: 32

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 2

African
type: Population
allele count: 840
allele frequency: 8.075370121130551e-2
allele num: 10402
num of homozygotes: 39

European (Non-Finnish)
type: Population
allele count: 11294
allele frequency: 1.693710446597283e-1
allele num: 66682
num of homozygotes: 993

East Asian
type: Population
allele count: 542
allele frequency: 6.273148148148149e-2
allele num: 8640
num of homozygotes: 14

South Asian
type: Population
allele count: 1485
allele frequency: 8.995638478313545e-2
allele num: 16508
num of homozygotes: 100

European (Finnish)
type: Population
allele count: 1094
allele frequency: 1.654067130329604e-1
allele num: 6614
num of homozygotes: 95

Other
type: Population
allele count: 151
allele frequency: 1.662995594713656e-1
allele num: 908
num of homozygotes: 10

Latino
type: Population
allele count: 1106
allele frequency: 9.565819062445943e-2
allele num: 11562
num of homozygotes: 64

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.86e1

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 2.941997e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

GenotypeQuality
all individuals: 15113
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4155
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variant carriers: 0

GenotypeQuality
all individuals: 3600
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8707
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variant carriers: 0

GenotypeQuality
all individuals: 5148
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19391
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variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

DP
type: SiteQuality
SIO_000300: 2.607926e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.121e0

VQSLOD
type: SiteQuality
SIO_000300: -6.501e-1

MQ
type: SiteQuality
SIO_000300: 5.885e1

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5144
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 19425
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 3597
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variant carriers: 0

GenotypeQuality
all individuals: 15112
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variant carriers: 4

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.782e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

DP
type: SiteQuality
SIO_000300: 2.608203e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 9.769e0

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15370
bin: 9.75e1
variant carriers: 607

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
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variant carriers: 0

GenotypeQuality
all individuals: 3565
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5101
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 67
allele frequency: 1.004076249850138e-3
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 467
allele frequency: 4.489521245914247e-2
allele num: 10402
num of homozygotes: 14

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 80
allele frequency: 6.918021445866483e-3
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 2.632518e6

MQ
type: SiteQuality
SIO_000300: 5.851e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2574
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 19607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.611245e6

MQ
type: SiteQuality
SIO_000300: 5.788e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.019e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

QD
type: SiteQuality
SIO_000300: 2.098e1

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 19606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
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variant carriers: 0

GenotypeQuality
all individuals: 14981
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.361e0

QD
type: SiteQuality
SIO_000300: 1.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.458e0

VQSLOD
type: SiteQuality
SIO_000300: -4.432e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

DP
type: SiteQuality
SIO_000300: 2.611202e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 3591
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 4136
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GenotypeQuality
all individuals: 8738
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variant carriers: 0

GenotypeQuality
all individuals: 5140
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 1798
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 14976
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19650
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.04e-1

DP
type: SiteQuality
SIO_000300: 2.610927e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3591
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variant carriers: 0

GenotypeQuality
all individuals: 8735
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 5141
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 4138
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 14977
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2574
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 19636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49288176232579e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

DP
type: SiteQuality
SIO_000300: 2.611037e6

VQSLOD
type: SiteQuality
SIO_000300: -8.434e-1

BaseQRankSum
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QD
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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QD
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DP
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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Other
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East Asian
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QD
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DP
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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Latino
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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African
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East Asian
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European (Non-Finnish)
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VQSLOD
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DP
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QD
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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BaseQRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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Latino
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European (Finnish)
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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African
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MQRankSum
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SIO_000300: 4.82e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.835949e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
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SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -4.108e-1

MQ
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SIO_000300: 5.889e1

MQRankSum
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SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.4e-1

QD
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SIO_000300: 1.158e1

DP
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SIO_000300: 2.840246e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.096e1

FS
type: SiteQuality
SIO_000300: 5.101e0

DP
type: SiteQuality
SIO_000300: 2.840415e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.058e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeDepth
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bin: 2.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.101e0

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

DP
type: SiteQuality
SIO_000300: 2.840415e6

QD
type: SiteQuality
SIO_000300: 1.096e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.058e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 6.628e0

DP
type: SiteQuality
SIO_000300: 2.841504e6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 839

East Asian
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allele count: 1
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allele num: 8654
num of homozygotes: 0

African
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allele count: 296
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allele num: 10406
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Latino
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allele frequency: 9.673518742442563e-3
allele num: 11578
num of homozygotes: 2

European (Non-Finnish)
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allele count: 417
allele frequency: 6.248501558379286e-3
allele num: 66736
num of homozygotes: 4

Other
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allele count: 6
allele frequency: 6.607929515418502e-3
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South Asian
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allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 1

European (Finnish)
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allele count: 12
allele frequency: 1.814333232537043e-3
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

MQRankSum
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FS
type: SiteQuality
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VQSLOD
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SIO_000300: 5.8e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 2.866398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.555e0

BaseQRankSum
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SIO_000300: -5.076e0

MQRankSum
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FS
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SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 2.79836e6

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.307e0

QD
type: SiteQuality
SIO_000300: 1.055e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

GenotypeDepth
all individuals: 3020
bin: 9.75e1
variant carriers: 13

GenotypeDepth
all individuals: 5726
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 490
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 721
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11556
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 904
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9882
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3778
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 532
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23745
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 3226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.825869690563137e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.414e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.798502e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7908
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3042
bin: 9.75e1
variant carriers: 29

GenotypeDepth
all individuals: 1755
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1317
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 431
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variant carriers: 5

GenotypeDepth
all individuals: 907
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 721
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 497
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variant carriers: 6

GenotypeDepth
all individuals: 11546
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variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 11345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5027
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3224
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23639
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6033
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.748013552817007e-4
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.322268326417704e-4
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.272727272727272e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.801563e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeDepth
all individuals: 3772
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8731
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 713
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variant carriers: 0

GenotypeDepth
all individuals: 1315
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variant carriers: 0

GenotypeDepth
all individuals: 7904
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variant carriers: 0

GenotypeDepth
all individuals: 2992
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variant carriers: 0

GenotypeDepth
all individuals: 423
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variant carriers: 1

GenotypeQuality
all individuals: 23584
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variant carriers: 1

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 3213
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 5016
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variant carriers: 0

GenotypeQuality
all individuals: 6033
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 4662
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 3970
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 11329
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.39e0

VQSLOD
type: SiteQuality
SIO_000300: -4.408e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.790633e6

FS
type: SiteQuality
SIO_000300: 1.833e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.678e1

GenotypeDepth
all individuals: 3091
bin: 9.75e1
variant carriers: 50

GenotypeDepth
all individuals: 5710
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11535
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8719
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variant carriers: 0

GenotypeDepth
all individuals: 894
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variant carriers: 2

GenotypeDepth
all individuals: 712
bin: 7.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1311
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 2589
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variant carriers: 0

GenotypeDepth
all individuals: 417
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variant carriers: 2

GenotypeDepth
all individuals: 477
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variant carriers: 3

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2643
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6028
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3204
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11328
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5017
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variant carriers: 1

GenotypeQuality
all individuals: 3965
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23331
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 4661
bin: 8.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 6.621121377193246e-4
allele num: 66454
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.332755632582322e-4
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.871513822920473e-4
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.03030303030303e-4
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.851338340073175e-4
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.802356e6

MQRankSum
type: SiteQuality
SIO_000300: -3.765e0

QD
type: SiteQuality
SIO_000300: 6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.511e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 2.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.695e0

GenotypeDepth
all individuals: 1300
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3053
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 11589
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 7911
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variant carriers: 0

GenotypeDepth
all individuals: 886
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 470
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variant carriers: 0

GenotypeDepth
all individuals: 703
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variant carriers: 0

GenotypeDepth
all individuals: 1738
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variant carriers: 0

GenotypeDepth
all individuals: 2582
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4674
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 11445
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2637
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 23652
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5040
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variant carriers: 0

GenotypeQuality
all individuals: 3956
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variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6054
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.485e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.644e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 2.79925e6

GenotypeDepth
all individuals: 8808
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 868
bin: 7.25e1
variant carriers: 60

GenotypeDepth
all individuals: 700
bin: 7.75e1
variant carriers: 81

GenotypeDepth
all individuals: 1327
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 511
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variant carriers: 72

GenotypeDepth
all individuals: 429
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variant carriers: 92

GenotypeDepth
all individuals: 3282
bin: 9.75e1
variant carriers: 710

GenotypeDepth
all individuals: 5680
bin: 4.75e1
variant carriers: 12

GenotypeDepth
all individuals: 460
bin: 8.75e1
variant carriers: 79

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22818
bin: 9.75e1
variant carriers: 1276

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6029
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 129
allele frequency: 1.125065410779696e-2
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 201
allele frequency: 1.223371880706026e-2
allele num: 16430
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 890
allele frequency: 1.346363306305216e-2
allele num: 66104
num of homozygotes: 9

African
type: Population
allele count: 21
allele frequency: 2.028201661193742e-3
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 3.20415013732072e-3
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.108647450110865e-2
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 15
allele frequency: 1.734906315058987e-3
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.279e0

VQSLOD
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SIO_000300: 2.81e0

QD
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SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 2.827457e6

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.86324125941665e-4
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.202347815563355e-4
allele num: 66104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.488574917146346e-4
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.869141813755326e-4
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.051571559353067e-4
allele num: 6554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.158e1

VQSLOD
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SIO_000300: 2.81e0

DP
type: SiteQuality
SIO_000300: 2.827457e6

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 3.427e1

FS
type: SiteQuality
SIO_000300: 2.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 2.742137e6

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeDepth
all individuals: 1373
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variant carriers: 0

GenotypeDepth
all individuals: 825
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
all individuals: 6130
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 75
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variant carriers: 2

GenotypeQuality
all individuals: 3973
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variant carriers: 1

GenotypeQuality
all individuals: 90
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variant carriers: 1

GenotypeQuality
all individuals: 377
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variant carriers: 3

GenotypeQuality
all individuals: 67
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variant carriers: 2

GenotypeQuality
all individuals: 5070
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 109
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3237
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variant carriers: 1

GenotypeQuality
all individuals: 11700
bin: 6.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.118407899918214e-4
allele num: 66026
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.873294346978557e-4
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.363001745200698e-4
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.058103975535168e-4
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.869220352099052e-4
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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MQRankSum
type: SiteQuality
SIO_000300: -4.604e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.746e1

DP
type: SiteQuality
SIO_000300: 2.742881e6

ReadPosRankSum
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SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 5.911e0

QD
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
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SIO_000300: 2.1e0

VQSLOD
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SIO_000300: -6.358e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
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European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.424e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

Other
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allele count: 0
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allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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ClippingRankSum
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FS
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
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