9-102730023-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730023
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730023
    reference: chr 9
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+2T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+2T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: c.669+2T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

9-102730028-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730028
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730028
    reference: chr 9
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+7T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+7T>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19201
  bin: 6.25e1
  variant carriers: 0
hgvs: c.669+7T>G
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-102730035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730035
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730035
    reference: chr 9
allele count: 6
allele frequency: 4.95884161459883e-5
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+14C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+14C>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

9-102730037-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730037
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730037
    reference: chr 9
allele count: 11
allele frequency: 9.093464279218955e-5
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+16T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+16T>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13851
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-102730050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730050
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730050
    reference: chr 9
allele count: 2
allele frequency: 1.654396558855158e-5
allele num: 120890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+29A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13842
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-102730057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730057
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730057
    reference: chr 9
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.470+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*535+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*127+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.669+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.649+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.669+36T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.669+36T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13092
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

9-102730669-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730669
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730669
    reference: chr 9
allele count: 3
allele frequency: 2.820662291506046e-5
allele num: 106358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-47G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-47G>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

9-102730672-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730672
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730672
    reference: chr 9
allele count: 4
allele frequency: 3.759539832324523e-5
allele num: 106396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-44A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-44A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9520
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

9-102730681-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730681
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730681
    reference: chr 9
allele count: 1
allele frequency: 9.396729937981582e-6
allele num: 106420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-35T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-35T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

9-102730681-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730681
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730679
    reference: chr 9
allele count: 1
allele frequency: 9.396729937981582e-6
allele num: 106420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-34_670-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-34_*128-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-34_670-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-34_471-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-34_650-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-34_670-33delCA
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-34_*536-33delCA
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: TCA
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-102730682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730682
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730682
    reference: chr 9
allele count: 1
allele frequency: 9.400263207369806e-6
allele num: 106380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-34C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-34C>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-102730697-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730698
    reference: chr 9
allele count: 6463
allele frequency: 1.03706675224647e-1
allele num: 62320
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-5dupT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-5dupT
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 389
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 839
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 1549
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 1258
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.25e1
  variant carriers: 2378
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 2173
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 671
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 845
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 549
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 9.75e1
  variant carriers: 610
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 5.25e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 870
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 15775
  bin: 2.5e0
  variant carriers: 667
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.75e1
  variant carriers: 764
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

9-102730697-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730699
    reference: chr 9
allele count: 64
allele frequency: 1.026957637997433e-3
allele num: 62320
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-6_650-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-6_670-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-6_*536-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-6_670-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-6_670-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-6_471-5dupTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-6_*128-5dupTT
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 15775
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 6
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

9-102730697-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730696
    reference: chr 9
allele count: 18549
allele frequency: 2.976412066752246e-1
allele num: 62320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-5delT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-5delT
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 2260
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 5954
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 577
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 4649
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 1216
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.25e1
  variant carriers: 4856
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 2580
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.25e1
  variant carriers: 615
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 1391
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.75e1
  variant carriers: 1395
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.75e1
  variant carriers: 1553
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 1003
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 1507
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 4.75e1
  variant carriers: 1281
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 1337
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 789
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: AT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-102730697-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730695
    reference: chr 9
allele count: 226
allele frequency: 3.626444159178434e-3
allele num: 62320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*536-6_*536-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.650-6_650-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.670-6_670-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.670-6_670-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*128-6_*128-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.670-6_670-5delTT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.471-6_471-5delTT
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 15775
  bin: 2.5e0
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 32
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: ATT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

9-102730697-ATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730694
    reference: chr 9
allele count: 4
allele frequency: 6.418485237483954e-5
allele num: 62320
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15775
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 2.982403817476887e-4
  allele num: 6706
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5228
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 454
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3576
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: ATTT
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

9-102730719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730719
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730719
    reference: chr 9
allele count: 1
allele frequency: 9.035382558097509e-6
allele num: 110676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.474G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.673G>A
  hgvsp: ENSP00000259400.6:p.Ala225Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.653G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.673G>A
  hgvsp: ENSP00000435981.1:p.Ala225Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.673G>A
  hgvsp: ENSP00000433484.1:p.Ala225Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*539G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9246
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10447
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala225Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

9-102730722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730722
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730722
    reference: chr 9
allele count: 1
allele frequency: 8.998632207904399e-6
allele num: 111128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*134A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.676A>G
  hgvsp: ENSP00000259400.6:p.Lys226Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.676A>G
  hgvsp: ENSP00000433484.1:p.Lys226Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.656A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*542A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.477A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.676A>G
  hgvsp: ENSP00000435981.1:p.Lys226Glu
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys226Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-102730738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730738
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730738
    reference: chr 9
allele count: 1
allele frequency: 8.840013436820424e-6
allele num: 113122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.672C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.692C>T
  hgvsp: ENSP00000433484.1:p.Ala231Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.692C>T
  hgvsp: ENSP00000435981.1:p.Ala231Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.692C>T
  hgvsp: ENSP00000259400.6:p.Ala231Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*150C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*558C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.493C>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10503
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14867
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala231Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

9-102730750-CAGGTGCACTCATCGGGGGAATGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730750
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730726
    reference: chr 9
allele count: 10
allele frequency: 8.802042073761112e-5
allele num: 113610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsp: ENSP00000259400.6:p.Ala237_Gly244del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsp: ENSP00000435981.1:p.Ala237_Gly244del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsp: ENSP00000433484.1:p.Ala237_Gly244del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10493
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala237_Gly244del
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: CAGGTGCACTCATCGGGGGAATGGT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

9-102730753-GTGCACTCATC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730743
    reference: chr 9
allele count: 32
allele frequency: 2.788816844453741e-4
allele num: 114744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsp: ENSP00000435981.1:p.Ala237GlyfsTer4
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsp: ENSP00000433484.1:p.Ala237GlyfsTer4
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsp: ENSP00000259400.6:p.Ala237GlyfsTer4
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala237GlyfsTer4
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: GTGCACTCATC
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

9-102730753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730753
    reference: chr 9
allele count: 1
allele frequency: 8.715052638917939e-6
allele num: 114744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*573G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.707G>A
  hgvsp: ENSP00000259400.6:p.Gly236Asp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.508G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.707G>A
  hgvsp: ENSP00000435981.1:p.Gly236Asp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.707G>A
  hgvsp: ENSP00000433484.1:p.Gly236Asp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.687G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly236Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

9-102730754-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730754
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730754
    reference: chr 9
allele count: 19422
allele frequency: 3.677573278800272e-1
allele num: 52812
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.708T>G
  hgvsp: ENST00000259400.6:c.708T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.509T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*166T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*574T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.708T>G
  hgvsp: ENST00000525640.1:c.708T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.708T>G
  hgvsp: ENST00000534052.1:c.708T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.688T>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 684
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.75e1
  variant carriers: 1134
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 4.75e1
  variant carriers: 2889
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 3.75e1
  variant carriers: 2940
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 920
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.25e1
  variant carriers: 2244
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.75e1
  variant carriers: 556
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 4.25e1
  variant carriers: 3288
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.25e1
  variant carriers: 2089
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 1446
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 1.75e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.25e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 388
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.75e1
  variant carriers: 552
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 392
genotype quality: GenotypeQuality
  all individuals: 29008
  bin: 2.5e0
  variant carriers: 170
hgvs: p.Gly236Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/9-102730756-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
allele count: 2
allele frequency: 1.880547615465623e-5
allele num: 106352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*576C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*168C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.710C>A
  hgvsp: ENSP00000435981.1:p.Ala237Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.690C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.710C>A
  hgvsp: ENSP00000259400.6:p.Ala237Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.710C>A
  hgvsp: ENSP00000433484.1:p.Ala237Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.511C>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala237Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

9-102730756-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
allele count: 789
allele frequency: 7.418760343011885e-3
allele num: 106352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.710C>G
  hgvsp: ENSP00000259400.6:p.Ala237Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.710C>G
  hgvsp: ENSP00000435981.1:p.Ala237Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*168C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.511C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.690C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.710C>G
  hgvsp: ENSP00000433484.1:p.Ala237Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*576C>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 4.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 4.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 1.25e1
  variant carriers: 15
hgvs: p.Ala237Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

9-102730756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730756
    reference: chr 9
allele count: 1
allele frequency: 9.402738077328117e-6
allele num: 106352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.710C>T
  hgvsp: ENSP00000433484.1:p.Ala237Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.511C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.690C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.710C>T
  hgvsp: ENSP00000259400.6:p.Ala237Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*576C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*168C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.710C>T
  hgvsp: ENSP00000435981.1:p.Ala237Val
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala237Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/9-102730757-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730757
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730757
    reference: chr 9
allele count: 11
allele frequency: 9.475570257046378e-5
allele num: 116088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*169A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.691A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.711A>C
  hgvsp: ENST00000525640.1:c.711A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.711A>C
  hgvsp: ENST00000534052.1:c.711A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.711A>C
  hgvsp: ENST00000259400.6:c.711A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*577A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.512A>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7007
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala237Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

9-102730757-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730757
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730757
    reference: chr 9
allele count: 1
allele frequency: 8.614154779133072e-6
allele num: 116088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*169A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.711A>G
  hgvsp: ENST00000534052.1:c.711A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*577A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.691A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.512A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.711A>G
  hgvsp: ENST00000259400.6:c.711A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.711A>G
  hgvsp: ENST00000525640.1:c.711A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala237Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-102730758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730758
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730758
    reference: chr 9
allele count: 3
allele frequency: 2.571002519582469e-5
allele num: 116686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.712C>A
  hgvsp: ENSP00000435981.1:p.Leu238Ile
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.692C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*170C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.712C>A
  hgvsp: ENSP00000259400.6:p.Leu238Ile
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*578C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.513C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.712C>A
  hgvsp: ENSP00000433484.1:p.Leu238Ile
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu238Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS

9-102730758-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730758
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730758
    reference: chr 9
allele count: 2
allele frequency: 1.714001679721646e-5
allele num: 116686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.712C>G
  hgvsp: ENSP00000433484.1:p.Leu238Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*170C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.712C>G
  hgvsp: ENSP00000259400.6:p.Leu238Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.513C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.712C>G
  hgvsp: ENSP00000435981.1:p.Leu238Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.692C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*578C>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu238Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

9-102730759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730759
    reference: chr 9
allele count: 12
allele frequency: 1.030113655873365e-4
allele num: 116492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.514T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.713T>C
  hgvsp: ENSP00000433484.1:p.Leu238Pro
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.713T>C
  hgvsp: ENSP00000259400.6:p.Leu238Pro
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.713T>C
  hgvsp: ENSP00000435981.1:p.Leu238Pro
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*579T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.693T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*171T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14539
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu238Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/9-102730761-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730761
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730761
    reference: chr 9
allele count: 13
allele frequency: 1.115822361080116e-4
allele num: 116506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*173A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.715A>C
  hgvsp: ENSP00000433484.1:p.Ile239Leu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.695A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.715A>C
  hgvsp: ENSP00000259400.6:p.Ile239Leu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*581A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.516A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.715A>C
  hgvsp: ENSP00000435981.1:p.Ile239Leu
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14513
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile239Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

9-102730763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730763
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730763
    reference: chr 9
allele count: 2
allele frequency: 1.708467163261122e-5
allele num: 117064
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.717C>T
  hgvsp: ENST00000259400.6:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.717C>T
  hgvsp: ENST00000525640.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*583C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.717C>T
  hgvsp: ENST00000534052.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.518C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*175C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.697C>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile239Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-102730764-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730764
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730764
    reference: chr 9
allele count: 6
allele frequency: 5.104905814487722e-5
allele num: 117534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.718G>C
  hgvsp: ENSP00000435981.1:p.Gly240Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*176G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*584G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.718G>C
  hgvsp: ENSP00000259400.6:p.Gly240Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.698G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.519G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.718G>C
  hgvsp: ENSP00000433484.1:p.Gly240Arg
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Gly240Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

9-102730764-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730764
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730764
    reference: chr 9
allele count: 2
allele frequency: 1.701635271495907e-5
allele num: 117534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.718G>T
  hgvsp: ENSP00000435981.1:p.Gly240Trp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.718G>T
  hgvsp: ENSP00000433484.1:p.Gly240Trp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.718G>T
  hgvsp: ENSP00000259400.6:p.Gly240Trp
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*584G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*176G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.519G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.698G>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly240Trp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-102730769-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730769
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730769
    reference: chr 9
allele count: 823
allele frequency: 8.06546452371619e-3
allele num: 102040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.524A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.723A>G
  hgvsp: ENST00000525640.1:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*589A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.723A>G
  hgvsp: ENST00000534052.1:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.723A>G
  hgvsp: ENST00000259400.6:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.703A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 4.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 3.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 3.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 4.25e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 6.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 4.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 1.75e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 7993
  bin: 9.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 6913
  bin: 6.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 1.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.75e1
  variant carriers: 9
hgvs: p.Gly241Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-102730771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730771
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730771
    reference: chr 9
allele count: 1
allele frequency: 8.408731626921395e-6
allele num: 118924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.725T>C
  hgvsp: ENSP00000435981.1:p.Met242Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*591T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.725T>C
  hgvsp: ENSP00000433484.1:p.Met242Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*183T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.526T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.725T>C
  hgvsp: ENSP00000259400.6:p.Met242Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.705T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met242Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-102730774-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730774
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730774
    reference: chr 9
allele count: 14
allele frequency: 1.17827265229174e-4
allele num: 118818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.728T>G
  hgvsp: ENSP00000435981.1:p.Val243Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*594T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*186T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.708T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.728T>G
  hgvsp: ENSP00000259400.6:p.Val243Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.728T>G
  hgvsp: ENSP00000433484.1:p.Val243Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.529T>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14211
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4702
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val243Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-102730775-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730775
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730776
    reference: chr 9
allele count: 2
allele frequency: 1.679176531828791e-5
allele num: 119106
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.535dupG
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.734dupG
  hgvsp: ENSP00000435981.1:p.Pro246SerfsTer53
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.734dupG
  hgvsp: ENSP00000433484.1:p.Pro246SerfsTer53
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*600dupG
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.734dupG
  hgvsp: ENSP00000259400.6:p.Pro246SerfsTer53
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*192dupG
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.714dupG
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5514
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro246SerfsTer53
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

9-102730776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730776
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730776
    reference: chr 9
allele count: 1
allele frequency: 8.386166180269028e-6
allele num: 119244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.730G>A
  hgvsp: ENSP00000259400.6:p.Gly244Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*596G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.730G>A
  hgvsp: ENSP00000433484.1:p.Gly244Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.531G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.730G>A
  hgvsp: ENSP00000435981.1:p.Gly244Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*188G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.710G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14337
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly244Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

9-102730777-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730777
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730777
    reference: chr 9
allele count: 4
allele frequency: 3.348401138456387e-5
allele num: 119460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*597G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.731G>C
  hgvsp: ENSP00000435981.1:p.Gly244Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*189G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.711G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.731G>C
  hgvsp: ENSP00000259400.6:p.Gly244Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.731G>C
  hgvsp: ENSP00000433484.1:p.Gly244Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.532G>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly244Ala
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-102730781-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730781
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730781
    reference: chr 9
allele count: 56
allele frequency: 4.832668841367646e-4
allele num: 115878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.715T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.735T>G
  hgvsp: ENST00000259400.6:c.735T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.735T>G
  hgvsp: ENST00000525640.1:c.735T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.536T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*193T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.735T>G
  hgvsp: ENST00000534052.1:c.735T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*601T>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4250
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 6404
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9931
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Gly245Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-102730785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730785
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730785
    reference: chr 9
allele count: 3
allele frequency: 2.502627759147104e-5
allele num: 119874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.540A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*605A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.739A>G
  hgvsp: ENSP00000435981.1:p.Ile247Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*197A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.739A>G
  hgvsp: ENSP00000433484.1:p.Ile247Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.719A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.739A>G
  hgvsp: ENSP00000259400.6:p.Ile247Val
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14705
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ile247Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-102730786-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730786
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730786
    reference: chr 9
allele count: 27
allele frequency: 2.250975422683163e-4
allele num: 119948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*198T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*606T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.740T>C
  hgvsp: ENSP00000433484.1:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.740T>C
  hgvsp: ENSP00000435981.1:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.541T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.740T>C
  hgvsp: ENSP00000259400.6:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.720T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14733
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile247Thr
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

9-102730789-GCCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730789
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730786
    reference: chr 9
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.747_749delCCT
  hgvsp: ENSP00000435981.1:p.Leu250del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.727_729delCCT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.548_550delCCT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*205_*207delCCT
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.747_749delCCT
  hgvsp: ENSP00000259400.6:p.Leu250del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.747_749delCCT
  hgvsp: ENSP00000433484.1:p.Leu250del
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*613_*615delCCT
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu250del
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: GCCT
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/9-102730791-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730791
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730791
    reference: chr 9
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.745C>A
  hgvsp: ENSP00000433484.1:p.Leu249Ile
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*203C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000434323
  ensembl transcript: ENST00000529340
  gene symbol: STX17
  hgvsc: ENST00000529340.1:c.*611C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.725C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.546C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.745C>A
  hgvsp: ENSP00000259400.6:p.Leu249Ile
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.745C>A
  hgvsp: ENSP00000435981.1:p.Leu249Ile
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu249Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-102730807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730807
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730807
    reference: chr 9
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*219A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.761A>G
  hgvsp: ENSP00000259400.6:p.Lys254Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.562A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.741A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.761A>G
  hgvsp: ENSP00000433484.1:p.Lys254Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.761A>G
  hgvsp: ENSP00000435981.1:p.Lys254Arg
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14767
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys254Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-102730817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730817
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730817
    reference: chr 9
allele count: 135
allele frequency: 1.137512639029323e-3
allele num: 118680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*229A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.771A>G
  hgvsp: ENST00000525640.1:c.771A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.751A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.771A>G
  hgvsp: ENST00000534052.1:c.771A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.771A>G
  hgvsp: ENST00000259400.6:c.771A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.572A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14693
  bin: 9.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7084
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5220
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 8.25e1
  variant carriers: 3
hgvs: p.Gly257Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-102730819-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730819
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730819
    reference: chr 9
allele count: 2
allele frequency: 1.653329806229747e-5
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.773T>A
  hgvsp: ENSP00000259400.6:p.Ile258Asn
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.773T>A
  hgvsp: ENSP00000435981.1:p.Ile258Asn
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.574T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.773T>A
  hgvsp: ENSP00000433484.1:p.Ile258Asn
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*231T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.753T>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile258Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

9-102730828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730828
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730828
    reference: chr 9
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.782C>T
  hgvsp: ENSP00000259400.6:p.Ala261Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.782C>T
  hgvsp: ENSP00000435981.1:p.Ala261Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*240C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.762C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.782C>T
  hgvsp: ENSP00000433484.1:p.Ala261Val
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.583C>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15401
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala261Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-102730839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730839
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730839
    reference: chr 9
allele count: 2
allele frequency: 1.650491846570278e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.793G>A
  hgvsp: ENSP00000435981.1:p.Gly265Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.793G>A
  hgvsp: ENSP00000433484.1:p.Gly265Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.793G>A
  hgvsp: ENSP00000259400.6:p.Gly265Arg
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.594G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*251G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.773G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly265Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

9-102730843-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730843
    reference: chr 9
allele count: 4
allele frequency: 3.313342831582784e-5
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*255T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.797T>G
  hgvsp: ENSP00000435981.1:p.Val266Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.777T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.797T>G
  hgvsp: ENSP00000433484.1:p.Val266Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.797T>G
  hgvsp: ENSP00000259400.6:p.Val266Gly
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.598T>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13772
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7178
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val266Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

9-102730858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730858
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730858
    reference: chr 9
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.812G>C
  hgvsp: ENSP00000435981.1:p.Gly271Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*270G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.613G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.812G>C
  hgvsp: ENSP00000433484.1:p.Gly271Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.812G>C
  hgvsp: ENSP00000259400.6:p.Gly271Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.792G>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4981
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly271Ala
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

9-102730866-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730866
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730866
    reference: chr 9
allele count: 3
allele frequency: 2.475574333245313e-5
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*278T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.621T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.800T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.820T>C
  hgvsp: ENST00000259400.6:c.820T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.820T>C
  hgvsp: ENST00000525640.1:c.820T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.820T>C
  hgvsp: ENST00000534052.1:c.820T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu274Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-102730874-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730874
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730874
    reference: chr 9
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000525847
  gene symbol: STX17
  hgvsc: ENST00000525847.1:n.808A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*286A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.828A>C
  hgvsp: ENSP00000433484.1:p.Gln276His
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.828A>C
  hgvsp: ENSP00000259400.6:p.Gln276His
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.828A>C
  hgvsp: ENSP00000435981.1:p.Gln276His
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.629A>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15971
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln276His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-102730904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730904
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730904
    reference: chr 9
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.659C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*316C>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.858C>T
  hgvsp: ENST00000525640.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.858C>T
  hgvsp: ENST00000534052.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.858C>T
  hgvsp: ENST00000259400.6:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu286Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

9-102730905-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730905
    reference: chr 9
allele count: 6
allele frequency: 4.951884191935031e-5
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.859A>G
  hgvsp: ENSP00000435981.1:p.Thr287Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*317A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.660A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.859A>G
  hgvsp: ENSP00000259400.6:p.Thr287Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.859A>G
  hgvsp: ENSP00000433484.1:p.Thr287Ala
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15984
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr287Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

9-102730915-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730915
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730915
    reference: chr 9
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.869G>C
  hgvsp: ENSP00000259400.6:p.Cys290Ser
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*327G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.869G>C
  hgvsp: ENSP00000435981.1:p.Cys290Ser
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.670G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.869G>C
  hgvsp: ENSP00000433484.1:p.Cys290Ser
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7246
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys290Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

9-102730937-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730937
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730937
    reference: chr 9
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.891T>G
  hgvsp: ENST00000525640.1:c.891T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.891T>G
  hgvsp: ENST00000259400.6:c.891T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.692T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*349T>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.891T>G
  hgvsp: ENST00000534052.1:c.891T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr297Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-102730939-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730939
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730939
    reference: chr 9
allele count: 1
allele frequency: 8.353521009105338e-6
allele num: 119710
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.893A>C
  hgvsp: ENSP00000259400.6:p.Asp298Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.694A>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.893A>C
  hgvsp: ENSP00000435981.1:p.Asp298Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.893A>C
  hgvsp: ENSP00000433484.1:p.Asp298Ala
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*351A>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7047
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp298Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-102730940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730940
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730940
    reference: chr 9
allele count: 71
allele frequency: 5.941522033841571e-4
allele num: 119498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.894C>G
  hgvsp: ENSP00000435981.1:p.Asp298Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*352C>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.894C>G
  hgvsp: ENSP00000259400.6:p.Asp298Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.894C>G
  hgvsp: ENSP00000433484.1:p.Asp298Glu
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.695C>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp298Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

9-102730952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730952
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730952
    reference: chr 9
allele count: 1
allele frequency: 8.462527926342156e-6
allele num: 118168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.906T>C
  hgvsp: ENST00000525640.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.906T>C
  hgvsp: ENST00000534052.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*364T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.906T>C
  hgvsp: ENST00000259400.6:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.707T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser302Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-102730965-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730965
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730965
    reference: chr 9
allele count: 24
allele frequency: 2.060793405461103e-4
allele num: 116460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*10T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*10T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*377T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.720T>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*10T>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5000
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-102730968-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730968
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730968
    reference: chr 9
allele count: 1
allele frequency: 8.597417335832316e-6
allele num: 116314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*380A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.723A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*13A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-102730972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730972
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730972
    reference: chr 9
allele count: 7
allele frequency: 6.039480949751519e-5
allele num: 115904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.727T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*17T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*384T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16043
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

9-102730975-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730975
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730975
    reference: chr 9
allele count: 2
allele frequency: 1.72995415621486e-5
allele num: 115610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*20T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*387T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.730T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

9-102730977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730977
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730977
    reference: chr 9
allele count: 1
allele frequency: 8.670019074041962e-6
allele num: 115340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.732G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*389G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*22G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

9-102730977-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730977
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730977
    reference: chr 9
allele count: 1
allele frequency: 8.670019074041962e-6
allele num: 115340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.732G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*22G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*22G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*22G>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*389G>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5603
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

9-102730978-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730978
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730978
    reference: chr 9
allele count: 1
allele frequency: 8.693535487011857e-6
allele num: 115028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*23G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*390G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*23G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.733G>T
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*23G>T
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

9-102730980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730980
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730980
    reference: chr 9
allele count: 1
allele frequency: 8.700191404210892e-6
allele num: 114940
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*25G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.735G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*392G>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16048
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

9-102730984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730984
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730984
    reference: chr 9
allele count: 3
allele frequency: 2.621644295302013e-5
allele num: 114432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*29A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*396A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.739A>G
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-102730993-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102730993
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102730993
    reference: chr 9
allele count: 1
allele frequency: 8.815232722143864e-6
allele num: 113440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.748T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*405T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*38T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000435981
  ensembl transcript: ENST00000525640
  gene symbol: STX17
  hgvsc: ENST00000525640.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/9-102731002-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102731002
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 102731002
    reference: chr 9
allele count: 1
allele frequency: 8.883992821733801e-6
allele num: 112562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000259400
  ensembl transcript: ENST00000259400
  gene symbol: STX17
  hgvsc: ENST00000259400.6:c.*47C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136874
  ensembl transcript: ENST00000529385
  gene symbol: STX17
  hgvsc: ENST00000529385.1:n.757C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000436666
  ensembl transcript: ENST00000524405
  gene symbol: STX17
  hgvsc: ENST00000524405.1:c.*414C>A
  variant of: http://identifiers.org/hgnc/11432
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136874
  ensembl protein: ENSP00000433484
  ensembl transcript: ENST00000534052
  gene symbol: STX17
  hgvsc: ENST00000534052.1:c.*47C>A
  variant of: http://identifiers.org/hgnc/11432
canonical: true
consequence: 3' UTR
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

FS
type: SiteQuality
SIO_000300: 1.055e0

QD
type: SiteQuality
SIO_000300: 1.598e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 2.106133e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
all individuals: 7892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.237e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: -1.443e0

BaseQRankSum
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SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

DP
type: SiteQuality
SIO_000300: 2.10516e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.014423076923077e-5
allele num: 66560
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

DP
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SIO_000300: 2.103541e6

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
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SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
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allele count: 9
allele frequency: 1.042873696407879e-3
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 2.066e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

DP
type: SiteQuality
SIO_000300: 2.102917e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.447e0

QD
type: SiteQuality
SIO_000300: 1.594e1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 2.09273e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

FS
type: SiteQuality
SIO_000300: 4.771e0

QD
type: SiteQuality
SIO_000300: 7.32e0

DP
type: SiteQuality
SIO_000300: 2.080161e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.859243901648903e-5
allele num: 61738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1826e1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.857967e6

VQSLOD
type: SiteQuality
SIO_000300: -4.174e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.562043795620438e-4
allele num: 8768
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61770
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.61906612266045e-5
allele num: 61764
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 8978
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.61906612266045e-5
allele num: 61764
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8778
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61738
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
type: Population
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allele num: 8984
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.267e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 3623
bin: 1.25e1
variant carriers: 812

GenotypeQuality
all individuals: 3336
bin: 1.75e1
variant carriers: 831

GenotypeQuality
all individuals: 2128
bin: 4.75e1
variant carriers: 498

GenotypeQuality
all individuals: 2539
bin: 3.75e1
variant carriers: 624

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 243

GenotypeQuality
all individuals: 1793
bin: 6.25e1
variant carriers: 295

GenotypeQuality
all individuals: 1031
bin: 7.75e1
variant carriers: 170

GenotypeQuality
all individuals: 861
bin: 8.25e1
variant carriers: 127

GenotypeQuality
all individuals: 1668
bin: 5.75e1
variant carriers: 338

GenotypeQuality
all individuals: 1391
bin: 6.75e1
variant carriers: 255

East Asian
type: Population
allele count: 517
allele frequency: 1.08294930875576e-1
allele num: 4774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 184
allele frequency: 5.145413870246085e-2
allele num: 3576
num of homozygotes: 0

Other
type: Population
allele count: 43
allele frequency: 9.47136563876652e-2
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 820
allele frequency: 1.222785565165523e-1
allele num: 6706
num of homozygotes: 0

African
type: Population
allele count: 601
allele frequency: 1.149579188982402e-1
allele num: 5228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3509
allele frequency: 9.719144693108797e-2
allele num: 36104
num of homozygotes: 0

South Asian
type: Population
allele count: 789
allele frequency: 1.440306681270537e-1
allele num: 5478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.766851e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

GenotypeQuality
all individuals: 2539
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 861
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2128
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1668
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1391
bin: 6.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.277838627236217e-3
allele num: 5478
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.640322099612287e-3
allele num: 6706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 9.971194327498339e-4
allele num: 36104
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.256807708420612e-3
allele num: 4774
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 7.651109410864575e-4
allele num: 5228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.766851e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

QD
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 1391
bin: 6.75e1
variant carriers: 857

GenotypeQuality
all individuals: 1668
bin: 5.75e1
variant carriers: 1112

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 578

GenotypeQuality
all individuals: 15775
bin: 2.5e0
variant carriers: 1170

GenotypeQuality
all individuals: 1887
bin: 5.25e1
variant carriers: 1159

GenotypeQuality
all individuals: 2276
bin: 4.25e1
variant carriers: 1276

GenotypeQuality
all individuals: 2539
bin: 3.75e1
variant carriers: 1348

GenotypeQuality
all individuals: 2873
bin: 3.25e1
variant carriers: 1477

GenotypeQuality
all individuals: 4024
bin: 9.75e1
variant carriers: 3156

GenotypeQuality
all individuals: 1031
bin: 7.75e1
variant carriers: 696

Latino
type: Population
allele count: 2176
allele frequency: 3.244855353414852e-1
allele num: 6706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10939
allele frequency: 3.029858187458453e-1
allele num: 36104
num of homozygotes: 0

East Asian
type: Population
allele count: 1445
allele frequency: 3.02681189777964e-1
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 1692
allele frequency: 3.088718510405257e-1
allele num: 5478
num of homozygotes: 0

African
type: Population
allele count: 1431
allele frequency: 2.737184391736802e-1
allele num: 5228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 741
allele frequency: 2.072147651006711e-1
allele num: 3576
num of homozygotes: 0

Other
type: Population
allele count: 125
allele frequency: 2.753303964757709e-1
allele num: 454
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.766851e6

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeQuality
all individuals: 1793
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 4024
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2873
bin: 3.25e1
variant carriers: 30

GenotypeQuality
all individuals: 3733
bin: 2.25e1
variant carriers: 22

GenotypeQuality
all individuals: 1031
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1887
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1668
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 4842
bin: 7.5e0
variant carriers: 59

GenotypeQuality
all individuals: 2276
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 3182
bin: 2.75e1
variant carriers: 27

South Asian
type: Population
allele count: 24
allele frequency: 4.381161007667032e-3
allele num: 5478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 119
allele frequency: 3.296033680478617e-3
allele num: 36104
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 3.251721499617445e-3
allele num: 5228
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 6.074570590699623e-3
allele num: 4774
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 4.324485535341485e-3
allele num: 6706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.398210290827741e-3
allele num: 3576
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 6.607929515418502e-3
allele num: 454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.766851e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.539552404165743e-5
allele num: 36104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

DP
type: SiteQuality
SIO_000300: 1.766851e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 4605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5549
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.574406448768814e-5
allele num: 63516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 8.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 2.126336e6

GenotypeQuality
all individuals: 10462
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4684
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570894467309686e-5
allele num: 63658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.132307e6

FS
type: SiteQuality
SIO_000300: 1.236e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 8117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557777985481509e-5
allele num: 64194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

QD
type: SiteQuality
SIO_000300: 7.12e0

MQ
type: SiteQuality
SIO_000300: 5.859e1

MQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

DP
type: SiteQuality
SIO_000300: 2.154653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.591e0

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12820
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.248517385604594e-4
allele num: 64076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 1.24716e2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e1

DP
type: SiteQuality
SIO_000300: 2.186171e6

QD
type: SiteQuality
SIO_000300: 2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.658e0

MQ
type: SiteQuality
SIO_000300: 5.752e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e0

GenotypeQuality
all individuals: 849
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10510
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 7626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4604
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 9.244042728019721e-4
allele num: 9736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.561805060860408e-4
allele num: 64574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.955e0

MQ
type: SiteQuality
SIO_000300: 5.474e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.649e0

MQRankSum
type: SiteQuality
SIO_000300: -2.085e0

DP
type: SiteQuality
SIO_000300: 2.194046e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.68e0

FS
type: SiteQuality
SIO_000300: 1.67365e2

QD
type: SiteQuality
SIO_000300: 3.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.827e1

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7626
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variant carriers: 0

GenotypeQuality
all individuals: 4604
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 1.67365e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.649e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.955e0

MQRankSum
type: SiteQuality
SIO_000300: -2.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.68e0

MQ
type: SiteQuality
SIO_000300: 5.474e1

VQSLOD
type: SiteQuality
SIO_000300: -2.827e1

DP
type: SiteQuality
SIO_000300: 2.194046e6

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 540

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 487

GenotypeQuality
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variant carriers: 11788

GenotypeQuality
all individuals: 1331
bin: 6.25e1
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GenotypeQuality
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variant carriers: 576

GenotypeQuality
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bin: 8.25e1
variant carriers: 483

GenotypeQuality
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bin: 8.75e1
variant carriers: 536

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 545

GenotypeQuality
all individuals: 1057
bin: 4.75e1
variant carriers: 575

GenotypeQuality
all individuals: 985
bin: 5.25e1
variant carriers: 565

European (Non-Finnish)
type: Population
allele count: 10737
allele frequency: 3.465784377017431e-1
allele num: 30980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1020
allele frequency: 3.896103896103896e-1
allele num: 2618
num of homozygotes: 0

African
type: Population
allele count: 1539
allele frequency: 4.13265306122449e-1
allele num: 3724
num of homozygotes: 0

Latino
type: Population
allele count: 1932
allele frequency: 4.050314465408805e-1
allele num: 4770
num of homozygotes: 0

Other
type: Population
allele count: 123
allele frequency: 3.306451612903226e-1
allele num: 372
num of homozygotes: 0

East Asian
type: Population
allele count: 1894
allele frequency: 4.473311289560699e-1
allele num: 4234
num of homozygotes: 0

South Asian
type: Population
allele count: 2177
allele frequency: 3.560680405626431e-1
allele num: 6114
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.554e0

FS
type: SiteQuality
SIO_000300: 2.55928e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.052e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.339e2

QD
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 2.352077e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.196e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1411
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.325352487363661e-5
allele num: 60144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

DP
type: SiteQuality
SIO_000300: 2.089681e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -1.451e2

FS
type: SiteQuality
SIO_000300: 1.75961e2

QD
type: SiteQuality
SIO_000300: 9.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3925
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GenotypeQuality
all individuals: 2834
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GenotypeQuality
all individuals: 2090
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variant carriers: 10

GenotypeQuality
all individuals: 13690
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variant carriers: 630

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
all individuals: 4168
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variant carriers: 12

GenotypeQuality
all individuals: 1270
bin: 4.75e1
variant carriers: 20

Other
type: Population
allele count: 8
allele frequency: 1.061007957559682e-2
allele num: 754
num of homozygotes: 0

Latino
type: Population
allele count: 155
allele frequency: 1.481552284458039e-2
allele num: 10462
num of homozygotes: 0

East Asian
type: Population
allele count: 87
allele frequency: 1.087228192951762e-2
allele num: 8002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 369
allele frequency: 6.135275339185954e-3
allele num: 60144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 50
allele frequency: 9.28332714444857e-3
allele num: 5386
num of homozygotes: 0

African
type: Population
allele count: 76
allele frequency: 8.901382056687749e-3
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 44
allele frequency: 3.367518750956681e-3
allele num: 13066
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

QD
type: SiteQuality
SIO_000300: 9.41e0

DP
type: SiteQuality
SIO_000300: 2.089681e6

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.451e2

FS
type: SiteQuality
SIO_000300: 1.75961e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1411
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variant carriers: 0

GenotypeQuality
all individuals: 1328
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GenotypeQuality
all individuals: 5909
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.856665428889714e-4
allele num: 5386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13066
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.41e0

VQSLOD
type: SiteQuality
SIO_000300: -1.451e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

MQ
type: SiteQuality
SIO_000300: 5.833e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.047e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

DP
type: SiteQuality
SIO_000300: 2.089681e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

FS
type: SiteQuality
SIO_000300: 1.75961e2

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3212
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GenotypeQuality
all individuals: 1353
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GenotypeQuality
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GenotypeQuality
all individuals: 4481
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variant carriers: 0

GenotypeQuality
all individuals: 14595
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.082251082251082e-4
allele num: 64680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032417922775139e-4
allele num: 9686
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.873797085510036e-5
allele num: 14548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.9268e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 2.104677e6

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.787e1

QD
type: SiteQuality
SIO_000300: 7.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 8369
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546072974644403e-5
allele num: 64680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 7.95e0

FS
type: SiteQuality
SIO_000300: 5.9268e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.787e1

GenotypeQuality
all individuals: 2275
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080335140463283e-5
allele num: 64928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.108035e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 1.3293e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7275
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540167570231641e-5
allele num: 64928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019783805833163e-4
allele num: 9806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

FS
type: SiteQuality
SIO_000300: 1.3293e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 308
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1005
bin: 3.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.823144104803493e-5
allele num: 14656
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.773469029654326e-5
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.233539951275172e-4
allele num: 64854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.06e-1

FS
type: SiteQuality
SIO_000300: 1.50768e2

DP
type: SiteQuality
SIO_000300: 2.110079e6

QD
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.056e2

GenotypeQuality
all individuals: 323
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5104
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4398
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2175
bin: 2.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3243
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variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.019575856443719e-4
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.635277582572031e-4
allele num: 11384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.248127254231018e-5
allele num: 64878
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333722287047841e-4
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.827802813054759e-5
allele num: 14646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

FS
type: SiteQuality
SIO_000300: 1.02176e2

DP
type: SiteQuality
SIO_000300: 2.116625e6

QD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 14605
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1293
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5229
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variant carriers: 0

GenotypeQuality
all individuals: 9077
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.07399096246657e-5
allele num: 65062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.861e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 2.121624e6

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9586
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variant carriers: 0

GenotypeQuality
all individuals: 2211
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GenotypeQuality
all individuals: 861
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5270
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variant carriers: 2

GenotypeQuality
all individuals: 14653
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 6922
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15014
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.542257865515114e-4
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.127075546841493e-5
allele num: 65284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.336e0

FS
type: SiteQuality
SIO_000300: 7.951e0

DP
type: SiteQuality
SIO_000300: 2.130822e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 6922
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variant carriers: 0

GenotypeQuality
all individuals: 861
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variant carriers: 0

GenotypeQuality
all individuals: 3293
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variant carriers: 0

GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 4497
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variant carriers: 0

GenotypeQuality
all individuals: 5270
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15014
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.951e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

VQSLOD
type: SiteQuality
SIO_000300: -2.336e0

DP
type: SiteQuality
SIO_000300: 2.130822e6

QD
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
all individuals: 1496
bin: 7.5e0
variant carriers: 202

GenotypeQuality
all individuals: 2320
bin: 3.25e1
variant carriers: 95

GenotypeQuality
all individuals: 2657
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variant carriers: 11

GenotypeQuality
all individuals: 3278
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variant carriers: 22

GenotypeQuality
all individuals: 2320
bin: 5.75e1
variant carriers: 45

GenotypeQuality
all individuals: 2241
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variant carriers: 94

GenotypeQuality
all individuals: 4203
bin: 2.5e0
variant carriers: 204

GenotypeQuality
all individuals: 2845
bin: 2.25e1
variant carriers: 135

GenotypeQuality
all individuals: 3503
bin: 7.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2416
bin: 5.25e1
variant carriers: 36

GenotypeQuality
all individuals: 2207
bin: 2.75e1
variant carriers: 129

Other
type: Population
allele count: 5
allele frequency: 6.702412868632708e-3
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 406
allele frequency: 6.98554714384033e-3
allele num: 58120
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 5.897771952817824e-3
allele num: 9156
num of homozygotes: 0

Latino
type: Population
allele count: 64
allele frequency: 6.278202864430057e-3
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 116
allele frequency: 2.384868421052632e-2
allele num: 4864
num of homozygotes: 0

East Asian
type: Population
allele count: 87
allele frequency: 1.206992230854606e-2
allele num: 7208
num of homozygotes: 0

South Asian
type: Population
allele count: 91
allele frequency: 7.743362831858407e-3
allele num: 11752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.69475e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.768e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: -1.322e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.178903e6

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-1

QD
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4730
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 2.824e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 7.79e0

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

DP
type: SiteQuality
SIO_000300: 2.171818e6

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 142
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5160
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GenotypeQuality
all individuals: 5462
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.471654154801968e-5
allele num: 15452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.559409100580564e-5
allele num: 65798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.542257865515114e-3
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.175058e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 1.71723e2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQ
type: SiteQuality
SIO_000300: 5.61e1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.271e0

QD
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

GenotypeQuality
all individuals: 14332
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 127
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 663
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03573054855651e-5
allele num: 65882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 2.179571e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

GenotypeQuality
all individuals: 5216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 642
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GenotypeQuality
all individuals: 3443
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GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 11373
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GenotypeQuality
all individuals: 3375
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GenotypeQuality
all individuals: 5520
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517036317849449e-5
allele num: 65918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.018e0

FS
type: SiteQuality
SIO_000300: 1.747e0

DP
type: SiteQuality
SIO_000300: 2.18218e6

VQSLOD
type: SiteQuality
SIO_000300: -2.97e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 2.313e1

GenotypeQuality
all individuals: 1441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
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GenotypeQuality
all individuals: 11595
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14369
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.744316194473592e-5
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.543526988550312e-5
allele num: 66028
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.367e0

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

FS
type: SiteQuality
SIO_000300: 1.7483e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 2.185726e6

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 959
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4767
bin: 7.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 3079
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variant carriers: 1

GenotypeQuality
all individuals: 1448
bin: 2.25e1
variant carriers: 5

GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3078
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4866
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variant carriers: 1

South Asian
type: Population
allele count: 3
allele frequency: 2.038320423970648e-4
allele num: 14718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 40
allele frequency: 7.429420505200594e-3
allele num: 5384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.694654136496688e-4
allele num: 64910
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

FS
type: SiteQuality
SIO_000300: 2.00776e2

DP
type: SiteQuality
SIO_000300: 2.192379e6

QD
type: SiteQuality
SIO_000300: 5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.844e2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
all individuals: 5533
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 1016
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3488
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variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 4799
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.304375236414071e-5
allele num: 15862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.933e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 2.202873e6

QD
type: SiteQuality
SIO_000300: 1.503e1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3420
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7373
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5314
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GenotypeQuality
all individuals: 4802
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.511591962905719e-3
allele num: 10352
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511395925276585e-5
allele num: 66164
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.204467e6

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.515e1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 13134
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variant carriers: 0

GenotypeQuality
all individuals: 823
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 4820
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variant carriers: 0

GenotypeQuality
all individuals: 5337
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GenotypeQuality
all individuals: 14725
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.736676568233443e-5
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

QD
type: SiteQuality
SIO_000300: 1.054e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.375e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

DP
type: SiteQuality
SIO_000300: 2.210553e6

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 7409
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 714
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4825
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14731
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variant carriers: 1

GenotypeQuality
all individuals: 5589
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.883e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

FS
type: SiteQuality
SIO_000300: 7.625e0

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.461e0

DP
type: SiteQuality
SIO_000300: 2.21488e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 124
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GenotypeQuality
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GenotypeQuality
all individuals: 3450
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.417999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

QD
type: SiteQuality
SIO_000300: 1.671e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.239369e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 195
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 4.488879820444807e-3
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 88
allele frequency: 1.349237987182239e-3
allele num: 65222
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.785802143735723e-5
allele num: 11382
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.276806e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.178e0

FS
type: SiteQuality
SIO_000300: 1.38171e2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.202e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13927
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GenotypeQuality
all individuals: 3531
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.562e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.222e0

DP
type: SiteQuality
SIO_000300: 2.258681e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 9.509e0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 4.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
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SIO_000300: 9.74e0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

DP
type: SiteQuality
SIO_000300: 2.261421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

DP
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SIO_000300: 2.264246e6

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 7.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 7.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 3

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.681647940074906e-4
allele num: 6408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.754e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.22316e2

VQSLOD
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SIO_000300: -6.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
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SIO_000300: 2.275839e6

BaseQRankSum
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SIO_000300: -4.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.277776e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.785e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501395432584101e-5
allele num: 66646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 3.204e0

DP
type: SiteQuality
SIO_000300: 2.27873e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

FS
type: SiteQuality
SIO_000300: 4.151e0

DP
type: SiteQuality
SIO_000300: 2.279428e6

MQRankSum
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SIO_000300: -3.68e-1

QD
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SIO_000300: 1.275e1

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 2.279903e6

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.003871664815871e-5
allele num: 66638
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8648
num of homozygotes: 0

African
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Latino
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South Asian
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allele frequency: 6.428387760349704e-5
allele num: 15556
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.117e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.584e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.255879e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 5630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16032
bin: 9.75e1
variant carriers: 71

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 40
allele frequency: 6.051437216338881e-3
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.227691378529367e-4
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.60778859527121e-4
allele num: 11504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 2.256181e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16020
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518003521768171e-5
allele num: 65876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.231577e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

QD
type: SiteQuality
SIO_000300: 1.785e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16039
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 9172
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.358490566037736e-3
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.22245652638978e-4
allele num: 65442
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.220362622036262e-3
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

DP
type: SiteQuality
SIO_000300: 2.207094e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 6759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16038
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52849107361213e-5
allele num: 65424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.213e-1

FS
type: SiteQuality
SIO_000300: 1.346e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 2.204909e6

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.742e0

MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 5606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.071319253137435e-4
allele num: 65340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 2.201465e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 5234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.199040767386091e-3
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

QD
type: SiteQuality
SIO_000300: 1.559e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 2.199568e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.123e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 5603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
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variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.11e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 2.1978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533366045142296e-5
allele num: 65216
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 2.1978e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 4.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 6718
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.039e0

DP
type: SiteQuality
SIO_000300: 2.195642e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.536e1

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.694e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 5233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535626535626536e-5
allele num: 65120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.285e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

FS
type: SiteQuality
SIO_000300: 2.356e0

QD
type: SiteQuality
SIO_000300: 1.034e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 2.195294e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 5232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16050
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.076165866863541e-5
allele num: 65016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12026
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

FS
type: SiteQuality
SIO_000300: 7.896e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.858e1

QD
type: SiteQuality
SIO_000300: 1.556e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 2.191775e6

GenotypeQuality
all individuals: 16051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.5e0
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GenotypeQuality
all individuals: 8543
bin: 6.25e1
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GenotypeQuality
all individuals: 5223
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.978e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.1853e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.67e1

MQ
type: SiteQuality
SIO_000300: 5.928e1