5-96011319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011319
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011319
    reference: chr 5
allele count: 4
allele frequency: 3.321045465112417e-5
allele num: 120444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.223T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+14T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+14T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

5-96011324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011324
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011324
    reference: chr 5
allele count: 2
allele frequency: 1.66096402351925e-5
allele num: 120412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.228G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+19G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+19G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/5-96011326-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011326
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011326
    reference: chr 5
allele count: 2
allele frequency: 1.661405549094534e-5
allele num: 120380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.230C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+21C>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

5-96011327-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011327
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011327
    reference: chr 5
allele count: 5
allele frequency: 4.153099873745764e-5
allele num: 120392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.231T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+22T>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+22T>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-96011336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011336
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011336
    reference: chr 5
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.240C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+31C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+31C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-96011342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011342
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011342
    reference: chr 5
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.246C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+37C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+37C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

5-96011347-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96011347
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96011347
    reference: chr 5
allele count: 2
allele frequency: 1.662952738883161e-5
allele num: 120268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507836
  gene symbol: CAST
  hgvsc: ENST00000507836.1:n.133+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000510245
  gene symbol: CAST
  hgvsc: ENST00000510245.1:n.251A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.93+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.158+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.123+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.93+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.86+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.93+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.93+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.158+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.138+42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-112+42A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

5-96031489-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031489
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031489
    reference: chr 5
allele count: 3
allele frequency: 3.090616887130671e-5
allele num: 97068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-162A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-51A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19602
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-96031492-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031492
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031492
    reference: chr 5
allele count: 1
allele frequency: 1.027263575288147e-5
allele num: 97346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-159T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-48T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-48T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

5-96031493-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031493
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031493
    reference: chr 5
allele count: 1
allele frequency: 1.027664734656966e-5
allele num: 97308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-158T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-47T>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12632
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-96031498-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031498
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031498
    reference: chr 5
allele count: 1
allele frequency: 1.025472742934493e-5
allele num: 97516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-153A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-42A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-42A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-96031499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031499
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031499
    reference: chr 5
allele count: 1
allele frequency: 1.025577913154062e-5
allele num: 97506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-152G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-41G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-41G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-96031503-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031503
    reference: chr 5
allele count: 2
allele frequency: 2.042275094455223e-5
allele num: 97930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-148T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-37T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-37T>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

5-96031506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031506
    reference: chr 5
allele count: 1
allele frequency: 1.016260162601626e-5
allele num: 98400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-145T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-34T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-34T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-96031507-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031507
    reference: chr 5
allele count: 2
allele frequency: 2.036369560347812e-5
allele num: 98214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-144C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-33C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-33C>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-96031507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031507
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 98214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-144C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-33C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-33C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

5-96031510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031510
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031510
    reference: chr 5
allele count: 1
allele frequency: 1.009448437373819e-5
allele num: 99064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-141C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-30C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-30C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16499
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

5-96031513-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031513
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031513
    reference: chr 5
allele count: 3
allele frequency: 3.005710850616171e-5
allele num: 99810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-138T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/5-96031519-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031519
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031519
    reference: chr 5
allele count: 1
allele frequency: 9.878884871475708e-6
allele num: 101226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-132C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-21C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-21C>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

5-96031522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031522
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031522
    reference: chr 5
allele count: 1
allele frequency: 9.775362177168665e-6
allele num: 102298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-129A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-18A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-96031528-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031528
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031528
    reference: chr 5
allele count: 1
allele frequency: 9.548727154670282e-6
allele num: 104726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-123T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94-12T>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87-12T>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/5-96031540-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031540
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031540
    reference: chr 5
allele count: 1
allele frequency: 9.133087348847404e-6
allele num: 109492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.124A>C
  hgvsp: ENSP00000422957.1:p.Lys42Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.139A>C
  hgvsp: ENSP00000422951.2:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.139A>C
  hgvsp: ENSP00000396558.2:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.94A>C
  hgvsp: ENSP00000427092.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.94A>C
  hgvsp: ENSP00000421230.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.139A>C
  hgvsp: ENSP00000425721.1:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.94A>C
  hgvsp: ENSP00000422612.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.139A>C
  hgvsp: ENSP00000352098.4:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.94A>C
  hgvsp: ENSP00000422677.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.139A>C
  hgvsp: ENSP00000379158.1:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.139A>C
  hgvsp: ENSP00000379157.2:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-111A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-111A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.159A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.139A>C
  hgvsp: ENSP00000422176.1:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.87A>C
  hgvsp: ENSP00000426422.1:p.Lys30Gln
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.159A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.139A>C
  hgvsp: ENSP00000320319.7:p.Lys47Gln
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys47Gln
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

5-96031541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031541
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031541
    reference: chr 5
allele count: 1
allele frequency: 9.103488456776638e-6
allele num: 109848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.160A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.140A>G
  hgvsp: ENSP00000320319.7:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.140A>G
  hgvsp: ENSP00000396558.2:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.140A>G
  hgvsp: ENSP00000379157.2:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.95A>G
  hgvsp: ENSP00000427092.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.140A>G
  hgvsp: ENSP00000425721.1:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.95A>G
  hgvsp: ENSP00000421230.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.140A>G
  hgvsp: ENSP00000422176.1:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.140A>G
  hgvsp: ENSP00000379158.1:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.160A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.95A>G
  hgvsp: ENSP00000422677.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.140A>G
  hgvsp: ENSP00000422951.2:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.95A>G
  hgvsp: ENSP00000422612.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.88A>G
  hgvsp: ENSP00000426422.1:p.Lys30Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-110A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.125A>G
  hgvsp: ENSP00000422957.1:p.Lys42Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.140A>G
  hgvsp: ENSP00000352098.4:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-110A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys47Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-96031548-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031548
    reference: chr 5
allele count: 1
allele frequency: 8.951109042410355e-6
allele num: 111718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.102A>C
  hgvsp: ENST00000514055.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.147A>C
  hgvsp: ENST00000395812.2:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.147A>C
  hgvsp: ENST00000359176.4:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.102A>C
  hgvsp: ENST00000514845.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.147A>C
  hgvsp: ENST00000508830.1:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.147A>C
  hgvsp: ENST00000325674.7:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.147A>C
  hgvsp: ENST00000395813.1:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.95A>C
  hgvsp: ENST00000512620.1:c.95A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.147A>C
  hgvsp: ENST00000421689.2:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.102A>C
  hgvsp: ENST00000508608.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.147A>C
  hgvsp: ENST00000511097.2:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.132A>C
  hgvsp: ENST00000505143.1:c.132A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.102A>C
  hgvsp: ENST00000506811.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-103A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-103A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.147A>C
  hgvsp: ENST00000510756.1:c.147A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.167A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.167A>C
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala49Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-96031557-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031557
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031557
    reference: chr 5
allele count: 1
allele frequency: 8.800183043807312e-6
allele num: 113634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-94C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.156C>A
  hgvsp: ENST00000511097.2:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.156C>A
  hgvsp: ENST00000421689.2:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-94C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.141C>A
  hgvsp: ENST00000505143.1:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.156C>A
  hgvsp: ENST00000510756.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.111C>A
  hgvsp: ENST00000506811.1:c.111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.104C>A
  hgvsp: ENST00000512620.1:c.104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.156C>A
  hgvsp: ENST00000395813.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.176C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.111C>A
  hgvsp: ENST00000514845.1:c.111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.111C>A
  hgvsp: ENST00000514055.1:c.111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.156C>A
  hgvsp: ENST00000395812.2:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.156C>A
  hgvsp: ENST00000325674.7:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.156C>A
  hgvsp: ENST00000508830.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.156C>A
  hgvsp: ENST00000359176.4:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.111C>A
  hgvsp: ENST00000508608.1:c.111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.176C>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu52Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-96031557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031557
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031557
    reference: chr 5
allele count: 5
allele frequency: 4.400091521903656e-5
allele num: 113634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.156C>T
  hgvsp: ENST00000395813.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.156C>T
  hgvsp: ENST00000395812.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.156C>T
  hgvsp: ENST00000421689.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.141C>T
  hgvsp: ENST00000505143.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.156C>T
  hgvsp: ENST00000511097.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.111C>T
  hgvsp: ENST00000508608.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.111C>T
  hgvsp: ENST00000514055.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.104C>T
  hgvsp: ENST00000512620.1:c.104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.156C>T
  hgvsp: ENST00000359176.4:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.111C>T
  hgvsp: ENST00000506811.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-94C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.176C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.156C>T
  hgvsp: ENST00000508830.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-94C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.156C>T
  hgvsp: ENST00000510756.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.111C>T
  hgvsp: ENST00000514845.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.156C>T
  hgvsp: ENST00000325674.7:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.176C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu52Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

5-96031558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031558
    reference: chr 5
allele count: 13
allele frequency: 1.14111161827183e-4
allele num: 113924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.157G>A
  hgvsp: ENSP00000422176.1:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-93G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.112G>A
  hgvsp: ENSP00000427092.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.157G>A
  hgvsp: ENSP00000422951.2:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.105G>A
  hgvsp: ENSP00000426422.1:p.Gly36Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.177G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.112G>A
  hgvsp: ENSP00000421230.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.157G>A
  hgvsp: ENSP00000379157.2:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.157G>A
  hgvsp: ENSP00000379158.1:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.157G>A
  hgvsp: ENSP00000320319.7:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.157G>A
  hgvsp: ENSP00000396558.2:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.142G>A
  hgvsp: ENSP00000422957.1:p.Gly48Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.112G>A
  hgvsp: ENSP00000422612.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.157G>A
  hgvsp: ENSP00000425721.1:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.157G>A
  hgvsp: ENSP00000352098.4:p.Gly53Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.177G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.112G>A
  hgvsp: ENSP00000422677.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-93G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Gly53Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-96031567-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031567
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031567
    reference: chr 5
allele count: 1
allele frequency: 8.705644740049447e-6
allele num: 114868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.166C>A
  hgvsp: ENSP00000422951.2:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.121C>A
  hgvsp: ENSP00000421230.1:p.Gln41Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.166C>A
  hgvsp: ENSP00000379157.2:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.121C>A
  hgvsp: ENSP00000427092.1:p.Gln41Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.166C>A
  hgvsp: ENSP00000425721.1:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.151C>A
  hgvsp: ENSP00000422957.1:p.Gln51Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-84C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.166C>A
  hgvsp: ENSP00000352098.4:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.186C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.121C>A
  hgvsp: ENSP00000422677.1:p.Gln41Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.166C>A
  hgvsp: ENSP00000379158.1:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.186C>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.121C>A
  hgvsp: ENSP00000422612.1:p.Gln41Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.166C>A
  hgvsp: ENSP00000422176.1:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.166C>A
  hgvsp: ENSP00000396558.2:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.114C>A
  hgvsp: ENSP00000426422.1:p.Gln39Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.166C>A
  hgvsp: ENSP00000320319.7:p.Gln56Lys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-84C>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln56Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-96031569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031569
    reference: chr 5
allele count: 25176
allele frequency: 2.160622028458145e-1
allele num: 116522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.188A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-82A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.168A>G
  hgvsp: ENST00000359176.4:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.168A>G
  hgvsp: ENST00000508830.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.123A>G
  hgvsp: ENST00000506811.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-82A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.168A>G
  hgvsp: ENST00000421689.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.123A>G
  hgvsp: ENST00000514845.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.168A>G
  hgvsp: ENST00000395813.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.168A>G
  hgvsp: ENST00000511097.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.123A>G
  hgvsp: ENST00000508608.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.123A>G
  hgvsp: ENST00000514055.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.116A>G
  hgvsp: ENST00000512620.1:c.116A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.168A>G
  hgvsp: ENST00000325674.7:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.168A>G
  hgvsp: ENST00000510756.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.153A>G
  hgvsp: ENST00000505143.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.188A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.168A>G
  hgvsp: ENST00000395812.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.25e1
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 4.25e1
  variant carriers: 2015
genotype quality: GenotypeQuality
hgvs: p.Gln56Gln
num of homozygotes: 2666
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

5-96031570-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031570
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031570
    reference: chr 5
allele count: 1
allele frequency: 8.660708099494215e-6
allele num: 115464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.169T>C
  hgvsp: ENSP00000352098.4:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.124T>C
  hgvsp: ENSP00000427092.1:p.Ser42Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.124T>C
  hgvsp: ENSP00000422677.1:p.Ser42Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-81T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.117T>C
  hgvsp: ENSP00000426422.1:p.Ser40Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.189T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.169T>C
  hgvsp: ENSP00000379157.2:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.124T>C
  hgvsp: ENSP00000422612.1:p.Ser42Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-81T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.124T>C
  hgvsp: ENSP00000421230.1:p.Ser42Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.169T>C
  hgvsp: ENSP00000379158.1:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.169T>C
  hgvsp: ENSP00000422951.2:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.189T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.169T>C
  hgvsp: ENSP00000396558.2:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.154T>C
  hgvsp: ENSP00000422957.1:p.Ser52Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.169T>C
  hgvsp: ENSP00000422176.1:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.169T>C
  hgvsp: ENSP00000425721.1:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.169T>C
  hgvsp: ENSP00000320319.7:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser57Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-96031581-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031581
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031581
    reference: chr 5
allele count: 1
allele frequency: 8.713382012094175e-6
allele num: 114766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.180C>G
  hgvsp: ENST00000421689.2:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.180C>G
  hgvsp: ENST00000395812.2:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-70C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.135C>G
  hgvsp: ENST00000514055.1:c.135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.180C>G
  hgvsp: ENST00000510756.1:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.135C>G
  hgvsp: ENST00000506811.1:c.135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.180C>G
  hgvsp: ENST00000508830.1:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.180C>G
  hgvsp: ENST00000511097.2:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.1C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.200C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.180C>G
  hgvsp: ENST00000395813.1:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-70C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.135C>G
  hgvsp: ENST00000514845.1:c.135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.180C>G
  hgvsp: ENST00000325674.7:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.128C>G
  hgvsp: ENST00000512620.1:c.128C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.135C>G
  hgvsp: ENST00000508608.1:c.135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.180C>G
  hgvsp: ENST00000359176.4:c.180C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.165C>G
  hgvsp: ENST00000505143.1:c.165C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.200C>G
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr60Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

5-96031582-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031582
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031582
    reference: chr 5
allele count: 2
allele frequency: 1.744500462292622e-5
allele num: 114646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-69T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.181T>C
  hgvsp: ENSP00000425721.1:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.181T>C
  hgvsp: ENSP00000422951.2:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.201T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.136T>C
  hgvsp: ENSP00000427092.1:p.Tyr46His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.181T>C
  hgvsp: ENSP00000379158.1:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.136T>C
  hgvsp: ENSP00000422612.1:p.Tyr46His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.181T>C
  hgvsp: ENSP00000396558.2:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.181T>C
  hgvsp: ENSP00000352098.4:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.136T>C
  hgvsp: ENSP00000421230.1:p.Tyr46His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.181T>C
  hgvsp: ENSP00000422176.1:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.136T>C
  hgvsp: ENSP00000422677.1:p.Tyr46His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-69T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.129T>C
  hgvsp: ENSP00000426422.1:p.Tyr44His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.181T>C
  hgvsp: ENSP00000379157.2:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.2T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.201T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.166T>C
  hgvsp: ENSP00000422957.1:p.Tyr56His
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.181T>C
  hgvsp: ENSP00000320319.7:p.Tyr61His
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr61His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-96031583-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031583
    reference: chr 5
allele count: 3
allele frequency: 2.6226527258104e-5
allele num: 114388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.3A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.202A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.137A>G
  hgvsp: ENSP00000422612.1:p.Tyr46Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.182A>G
  hgvsp: ENSP00000379157.2:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.182A>G
  hgvsp: ENSP00000320319.7:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.182A>G
  hgvsp: ENSP00000379158.1:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-68A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.137A>G
  hgvsp: ENSP00000421230.1:p.Tyr46Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.137A>G
  hgvsp: ENSP00000427092.1:p.Tyr46Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.130A>G
  hgvsp: ENSP00000426422.1:p.Tyr44Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.182A>G
  hgvsp: ENSP00000352098.4:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.182A>G
  hgvsp: ENSP00000422176.1:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.182A>G
  hgvsp: ENSP00000396558.2:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.202A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.182A>G
  hgvsp: ENSP00000422951.2:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-68A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.167A>G
  hgvsp: ENSP00000422957.1:p.Tyr56Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.137A>G
  hgvsp: ENSP00000422677.1:p.Tyr46Cys
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.182A>G
  hgvsp: ENSP00000425721.1:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr61Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-96031591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031591
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031591
    reference: chr 5
allele count: 1
allele frequency: 8.846426043878273e-6
allele num: 113040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.145G>A
  hgvsp: ENSP00000427092.1:p.Gly49Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.11G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.190G>A
  hgvsp: ENSP00000379158.1:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.190G>A
  hgvsp: ENSP00000425721.1:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.145G>A
  hgvsp: ENSP00000421230.1:p.Gly49Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-60G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.190G>A
  hgvsp: ENSP00000352098.4:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.190G>A
  hgvsp: ENSP00000396558.2:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.190G>A
  hgvsp: ENSP00000379157.2:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.190G>A
  hgvsp: ENSP00000422176.1:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.138G>A
  hgvsp: ENSP00000426422.1:p.Gly47Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.190G>A
  hgvsp: ENSP00000422951.2:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.175G>A
  hgvsp: ENSP00000422957.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.210G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.190G>A
  hgvsp: ENSP00000320319.7:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-60G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.210G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.145G>A
  hgvsp: ENSP00000422677.1:p.Gly49Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.145G>A
  hgvsp: ENSP00000422612.1:p.Gly49Arg
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly64Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-96031595-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031595
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031595
    reference: chr 5
allele count: 1
allele frequency: 8.966358223943762e-6
allele num: 111528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.179C>G
  hgvsp: ENSP00000422957.1:p.Thr60Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.194C>G
  hgvsp: ENSP00000352098.4:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-56C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.194C>G
  hgvsp: ENSP00000422951.2:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.149C>G
  hgvsp: ENSP00000422612.1:p.Thr50Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.194C>G
  hgvsp: ENSP00000320319.7:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-56C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.194C>G
  hgvsp: ENSP00000396558.2:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.194C>G
  hgvsp: ENSP00000379158.1:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.194C>G
  hgvsp: ENSP00000379157.2:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.149C>G
  hgvsp: ENSP00000422677.1:p.Thr50Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.194C>G
  hgvsp: ENSP00000422176.1:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.149C>G
  hgvsp: ENSP00000427092.1:p.Thr50Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.142C>G
  hgvsp: ENSP00000426422.1:p.Thr48Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.149C>G
  hgvsp: ENSP00000421230.1:p.Thr50Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.214C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.214C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.194C>G
  hgvsp: ENSP00000425721.1:p.Thr65Arg
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.15C>G
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr65Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-96031597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031597
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031597
    reference: chr 5
allele count: 3
allele frequency: 2.691210506485817e-5
allele num: 111474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.151G>A
  hgvsp: ENSP00000422677.1:p.Ala51Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.196G>A
  hgvsp: ENSP00000425721.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.144G>A
  hgvsp: ENSP00000426422.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.196G>A
  hgvsp: ENSP00000379157.2:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.196G>A
  hgvsp: ENSP00000352098.4:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.151G>A
  hgvsp: ENSP00000427092.1:p.Ala51Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.196G>A
  hgvsp: ENSP00000396558.2:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.17G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.151G>A
  hgvsp: ENSP00000421230.1:p.Ala51Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.151G>A
  hgvsp: ENSP00000422612.1:p.Ala51Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-54G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.196G>A
  hgvsp: ENSP00000320319.7:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.196G>A
  hgvsp: ENSP00000379158.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.216G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.196G>A
  hgvsp: ENSP00000422176.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-54G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.181G>A
  hgvsp: ENSP00000422957.1:p.Ala61Thr
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.216G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.196G>A
  hgvsp: ENSP00000422951.2:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala66Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-96031601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031601
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031601
    reference: chr 5
allele count: 3
allele frequency: 2.718326960366793e-5
allele num: 110362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.200C>T
  hgvsp: ENSP00000379157.2:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.200C>T
  hgvsp: ENSP00000320319.7:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.200C>T
  hgvsp: ENSP00000425721.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.155C>T
  hgvsp: ENSP00000427092.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.21C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.200C>T
  hgvsp: ENSP00000352098.4:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.220C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.185C>T
  hgvsp: ENSP00000422957.1:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.200C>T
  hgvsp: ENSP00000422951.2:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.200C>T
  hgvsp: ENSP00000422176.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-50C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.155C>T
  hgvsp: ENSP00000421230.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.200C>T
  hgvsp: ENSP00000379158.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.200C>T
  hgvsp: ENSP00000396558.2:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.155C>T
  hgvsp: ENSP00000422677.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.220C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-50C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.155C>T
  hgvsp: ENSP00000422612.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.148C>T
  hgvsp: ENSP00000426422.1:p.Ser50Leu
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser67Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-96031602-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031602
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031602
    reference: chr 5
allele count: 2
allele frequency: 1.825017337664708e-5
allele num: 109588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.156G>A
  hgvsp: ENST00000506811.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.149G>A
  hgvsp: ENST00000512620.1:c.149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.201G>A
  hgvsp: ENST00000508830.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.221G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.156G>A
  hgvsp: ENST00000514845.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.201G>A
  hgvsp: ENST00000395813.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.201G>A
  hgvsp: ENST00000421689.2:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.156G>A
  hgvsp: ENST00000514055.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.201G>A
  hgvsp: ENST00000325674.7:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.156G>A
  hgvsp: ENST00000508608.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.186G>A
  hgvsp: ENST00000505143.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.22G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.201G>A
  hgvsp: ENST00000359176.4:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.201G>A
  hgvsp: ENST00000510756.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-49G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.221G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-49G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.201G>A
  hgvsp: ENST00000511097.2:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.201G>A
  hgvsp: ENST00000395812.2:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser67Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

5-96031611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031611
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031611
    reference: chr 5
allele count: 2
allele frequency: 1.864836640310309e-5
allele num: 107248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210G>A
  hgvsp: ENST00000421689.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210G>A
  hgvsp: ENST00000395813.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165G>A
  hgvsp: ENST00000508608.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158G>A
  hgvsp: ENST00000512620.1:c.158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195G>A
  hgvsp: ENST00000505143.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165G>A
  hgvsp: ENST00000514055.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210G>A
  hgvsp: ENST00000359176.4:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165G>A
  hgvsp: ENST00000506811.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210G>A
  hgvsp: ENST00000510756.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165G>A
  hgvsp: ENST00000514845.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210G>A
  hgvsp: ENST00000511097.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210G>A
  hgvsp: ENST00000325674.7:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.230G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210G>A
  hgvsp: ENST00000508830.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.210G>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

5-96031622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031622
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031622
    reference: chr 5
allele count: 32
allele frequency: 3.10294003568381e-4
allele num: 103128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.241T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+11T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+11T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

5-96031631-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031631
    reference: chr 5
allele count: 1
allele frequency: 1.007353681877707e-5
allele num: 99270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.250C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+20C>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+20C>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-96031632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031632
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031632
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 98952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.251G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+21G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+21G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

5-96031644-ACTGTAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031644
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031638
    reference: chr 5
allele count: 8
allele frequency: 8.58534910175785e-5
allele num: 93182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+34_31+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+34_158+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+34_-40+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+34_165+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+34_230+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+34_-40+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.264_269delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+34_165+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+34_210+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+34_165+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+34_165+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+34_195+39delCTGTAT
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23566
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: ACTGTAT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

5-96031645-CTGTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031645
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031641
    reference: chr 5
allele count: 1
allele frequency: 1.075222571072212e-5
allele num: 93004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+36_230+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+36_-40+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+36_165+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+36_158+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+36_31+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+36_165+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.266_269delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+36_210+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+36_-40+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+36_195+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+36_165+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+36_165+39delGTAT
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: CTGTA
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

5-96031645-CTGTATTCTACAGGGATA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031645
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031628
    reference: chr 5
allele count: 2
allele frequency: 2.150445142144424e-5
allele num: 93004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: CTGTATTCTACAGGGATA
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-96031646-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031646
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031646
    reference: chr 5
allele count: 1
allele frequency: 1.073145604395604e-5
allele num: 93184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.265T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+35T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+35T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

5-96031647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031647
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031647
    reference: chr 5
allele count: 2
allele frequency: 2.173724023997913e-5
allele num: 92008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.266G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+36G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+36G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

5-96031649-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031649
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031649
    reference: chr 5
allele count: 1
allele frequency: 1.089799476896251e-5
allele num: 91760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.268A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+38A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

5-96031659-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031659
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031659
    reference: chr 5
allele count: 2
allele frequency: 2.340823970037453e-5
allele num: 85440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.278G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+48G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+48G>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-96031662-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031662
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031662
    reference: chr 5
allele count: 4
allele frequency: 4.698585725696565e-5
allele num: 85132
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.281A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+51A>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+51A>C
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-96031662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96031662
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96031662
    reference: chr 5
allele count: 1
allele frequency: 1.174646431424141e-5
allele num: 85132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.158+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000515160
  gene symbol: CAST
  hgvsc: ENST00000515160.1:n.281A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.230+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.165+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.165+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000505402
  gene symbol: CAST
  hgvsc: ENST00000505402.1:n.31+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.165+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.210+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.165+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-40+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-40+51A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.195+51A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

5-96058292-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058292
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058292
    reference: chr 5
allele count: 1
allele frequency: 8.47314014573801e-6
allele num: 118020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15261G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-51G>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-51G>C
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

5-96058293-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058293
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058293
    reference: chr 5
allele count: 1
allele frequency: 8.464963516007247e-6
allele num: 118134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15260A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.211-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-50A>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-50A>T
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-96058297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058297
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058297
    reference: chr 5
allele count: 1
allele frequency: 8.455801525426595e-6
allele num: 118262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15256T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-46T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-46T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-96058299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058299
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058299
    reference: chr 5
allele count: 2
allele frequency: 1.692391010018955e-5
allele num: 118176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15254G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-44G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-96058308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058308
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058308
    reference: chr 5
allele count: 152
allele frequency: 1.28220268925143e-3
allele num: 118546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15245G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-35G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 2
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

5-96058310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058310
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058310
    reference: chr 5
allele count: 1
allele frequency: 8.420485356775965e-6
allele num: 118758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15243A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-33A>G
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-33A>G
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

5-96058313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058313
    reference: chr 5
allele count: 7
allele frequency: 5.887498317857624e-5
allele num: 118896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15240G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-30G>A
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-30G>A
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-96058313-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058313
    reference: chr 5
allele count: 2
allele frequency: 1.68214237653075e-5
allele num: 118896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15240G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422176
  ensembl transcript: ENST00000510756
  gene symbol: CAST
  hgvsc: ENST00000510756.1:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-30G>T
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

5-96058319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058319
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058319
    reference: chr 5
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422957
  ensembl transcript: ENST00000505143
  gene symbol: CAST
  hgvsc: ENST00000505143.1:c.196-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15234T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425670
  ensembl transcript: ENST00000504465
  gene symbol: CAST
  hgvsc: ENST00000504465.1:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000507487
  gene symbol: CAST
  hgvsc: ENST00000507487.1:n.231-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000339914
  ensembl transcript: ENST00000341926
  gene symbol: CAST
  hgvsc: ENST00000341926.3:c.-39-24T>C
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-24T>C
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-96058330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96058330
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 96058330
    reference: chr 5
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000312523
  ensembl transcript: ENST00000309190
  gene symbol: CAST
  hgvsc: ENST00000309190.5:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421130
  ensembl transcript: ENST00000511049
  gene symbol: CAST
  hgvsc: ENST00000511049.1:c.-121-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000352098
  ensembl transcript: ENST00000359176
  gene symbol: CAST
  hgvsc: ENST00000359176.4:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000343421
  ensembl transcript: ENST00000338252
  gene symbol: CAST
  hgvsc: ENST00000338252.3:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000423638
  ensembl transcript: ENST00000511782
  gene symbol: CAST
  hgvsc: ENST00000511782.1:c.-101-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426946
  ensembl transcript: ENST00000509903
  gene symbol: CAST
  hgvsc: ENST00000509903.1:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000421230
  ensembl transcript: ENST00000514055
  gene symbol: CAST
  hgvsc: ENST00000514055.1:c.166-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000427092
  ensembl transcript: ENST00000506811
  gene symbol: CAST
  hgvsc: ENST00000506811.1:c.166-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422612
  ensembl transcript: ENST00000514845
  gene symbol: CAST
  hgvsc: ENST00000514845.1:c.166-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000426422
  ensembl transcript: ENST00000512620
  gene symbol: CAST
  hgvsc: ENST00000512620.1:c.159-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000425721
  ensembl transcript: ENST00000508830
  gene symbol: CAST
  hgvsc: ENST00000508830.1:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422466
  ensembl transcript: ENST00000508117
  gene symbol: CAST
  hgvsc: ENST00000508117.2:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379157
  ensembl transcript: ENST00000395812
  gene symbol: CAST
  hgvsc: ENST00000395812.2:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000379158
  ensembl transcript: ENST00000395813
  gene symbol: CAST
  hgvsc: ENST00000395813.1:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl transcript: ENST00000513666
  gene symbol: CAST
  hgvsc: ENST00000513666.1:n.74-15223C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000396558
  ensembl transcript: ENST00000421689
  gene symbol: CAST
  hgvsc: ENST00000421689.2:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422951
  ensembl transcript: ENST00000511097
  gene symbol: CAST
  hgvsc: ENST00000511097.2:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422831
  ensembl transcript: ENST00000508197
  gene symbol: CAST
  hgvsc: ENST00000508197.1:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422325
  ensembl transcript: ENST00000510156
  gene symbol: CAST
  hgvsc: ENST00000510156.1:c.-39-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000422677
  ensembl transcript: ENST00000508608
  gene symbol: CAST
  hgvsc: ENST00000508608.1:c.166-13C>T
  variant of: http://identifiers.org/hgnc/1515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153113
  ensembl protein: ENSP00000320319
  ensembl transcript: ENST00000325674
  gene symbol: CAST
  hgvsc: ENST00000325674.7:c.211-13C>T
  variant of: http://identifiers.org/hgnc/1515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 739
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1622
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15017
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 516
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1002
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16698
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3132
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6099
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1886
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12753
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5233
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.644681839294008e-4
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 2.108839e6

QD
type: SiteQuality
SIO_000300: 1.294e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.667e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

GenotypeDepth
all individuals: 15016
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 516
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 505
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10784
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6100
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16572
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1002
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3136
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 739
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1886
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12752
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.458e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

DP
type: SiteQuality
SIO_000300: 2.10777e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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SIO_000300: 7.06e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Latino
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Other
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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Other
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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allele num: 8598
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MQ
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SIO_000300: 6.0e1

DP
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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MQ
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
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allele num: 66462
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European (Finnish)
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South Asian
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Other
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Latino
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East Asian
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African
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FS
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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QD
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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InbreedingCoeff
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DP
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MQRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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FS
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MQ
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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South Asian
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Latino
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African
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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QD
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQ
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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FS
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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QD
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DP
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South Asian
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East Asian
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European (Non-Finnish)
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QD
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FS
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MQ
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South Asian
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Latino
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African
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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East Asian
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FS
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DP
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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Other
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East Asian
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8952
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.782419967444384e-5
allele num: 14744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -9.96e-1

VQSLOD
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FS
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SIO_000300: 1.919e0

MQ
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InbreedingCoeff
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SIO_000300: -5.0e-4

BaseQRankSum
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SIO_000300: 1.17e0

QD
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ClippingRankSum
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SIO_000300: 4.46e-1

MQRankSum
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SIO_000300: -1.065e0

DP
type: SiteQuality
SIO_000300: 1.38495e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579429510060966e-5
allele num: 63314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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SIO_000300: -3.9e-2

DP
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SIO_000300: 1.419281e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.670224119530417e-5
allele num: 14992
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.404316229905307e-4
allele num: 9082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.419281e6

BaseQRankSum
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SIO_000300: -1.293e0

ClippingRankSum
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SIO_000300: -3.9e-2

MQ
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SIO_000300: 5.94e1

VQSLOD
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SIO_000300: 1.58e0

FS
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SIO_000300: 6.662e0

ReadPosRankSum
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SIO_000300: 1.16e-1

QD
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SIO_000300: 1.158e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.575448215017172e-4
allele num: 63474
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.298153034300791e-4
allele num: 9096
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 0.0e0

BaseQRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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SIO_000300: -7.0e-4

ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.589351607801793e-5
allele num: 15176
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BaseQRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 433

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2400
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GenotypeQuality
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GenotypeQuality
all individuals: 396
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GenotypeQuality
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GenotypeQuality
all individuals: 323
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variant carriers: 66

GenotypeQuality
all individuals: 266
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variant carriers: 129

Latino
type: Population
allele count: 2756
allele frequency: 2.479309103994242e-1
allele num: 11116
num of homozygotes: 317

East Asian
type: Population
allele count: 2031
allele frequency: 2.416131334760885e-1
allele num: 8406
num of homozygotes: 222

European (Non-Finnish)
type: Population
allele count: 13586
allele frequency: 2.096734366318909e-1
allele num: 64796
num of homozygotes: 1351

European (Finnish)
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allele count: 1651
allele frequency: 2.562868674324744e-1
allele num: 6442
num of homozygotes: 197

African
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allele count: 1241
allele frequency: 1.341041711692241e-1
allele num: 9254
num of homozygotes: 76

South Asian
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allele count: 3740
allele frequency: 2.391916091071885e-1
allele num: 15636
num of homozygotes: 484

Other
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allele count: 171
allele frequency: 1.961009174311927e-1
allele num: 872
num of homozygotes: 19

ClippingRankSum
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SIO_000300: -2.89e-1

MQRankSum
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SIO_000300: 7.5e-2

DP
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SIO_000300: 1.760646e6

BaseQRankSum
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SIO_000300: 1.61e0

MQ
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ReadPosRankSum
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SIO_000300: 2.85e-1

VQSLOD
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.12e-2

QD
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SIO_000300: 1.534e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.554968123153475e-5
allele num: 64310
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

BaseQRankSum
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SIO_000300: 1.32e0

QD
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SIO_000300: 1.159e1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -4.0e-4

ClippingRankSum
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SIO_000300: 2.11e0

VQSLOD
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SIO_000300: -5.891e-1

ReadPosRankSum
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SIO_000300: -1.747e0

DP
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SIO_000300: 1.484116e6

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.578081831337982e-5
allele num: 15202
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
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SIO_000300: -1.706e0

DP
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SIO_000300: 1.473496e6

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
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SIO_000300: 2.934e0

ReadPosRankSum
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SIO_000300: 6.35e-1

MQRankSum
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SIO_000300: 7.4e-2

QD
type: SiteQuality
SIO_000300: 1.261e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.130968408528758e-5
allele num: 63878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

QD
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MQRankSum
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SIO_000300: -2.03e-1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: 3.7e0

MQ
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SIO_000300: 6.0e1

VQSLOD
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FS
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ClippingRankSum
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SIO_000300: 1.63e-1

DP
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SIO_000300: 1.470876e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.706029993097823e-5
allele num: 63748
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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InbreedingCoeff
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DP
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63020
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.696129637069774e-5
allele num: 14934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.646e0

VQSLOD
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 1.442284e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.13e0

GenotypeDepth
all individuals: 151
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5477
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15890
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1512
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26266
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4478
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3896
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608337622233659e-5
allele num: 62176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

VQSLOD
type: SiteQuality
SIO_000300: -1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.079e0

DP
type: SiteQuality
SIO_000300: 1.411966e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.847e1

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1468
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15813
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 151
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3852
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26394
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4510
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5477
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.384476534296029e-4
allele num: 8864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 1.411062e6

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 9.84e0

GenotypeDepth
all individuals: 15338
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25142
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5006
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6688
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3717
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1622
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 151
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.141552511415525e-4
allele num: 8760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.370801919122687e-4
allele num: 14590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 4.034e0

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

DP
type: SiteQuality
SIO_000300: 1.386754e6

QD
type: SiteQuality
SIO_000300: 2.836e1

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24396
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1784
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7431
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 151
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14941
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3652
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5319
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 861
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9830
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637250728576574e-5
allele num: 61078
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.175e0

QD
type: SiteQuality
SIO_000300: 1.254e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 1.028e0

DP
type: SiteQuality
SIO_000300: 1.370698e6

Annotation
canonical: true
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000379157
ensembl transcript: ENST00000395812
gene symbol: CAST
hgvsc: ENST00000395812.2:c.210G>A
hgvsp: ENST00000395812.2:c.210G>A(p.%3D)
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 188
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 397
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13620
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21697
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3276
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10302
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6475
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2145
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 815
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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DP
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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DP
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VQSLOD
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MQ
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QD
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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Other
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African
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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QD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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FS
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MQ
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MQRankSum
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QD
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DP
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variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6083
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8609
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.485722771437057e-5
allele num: 47138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.693e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

DP
type: SiteQuality
SIO_000300: 9.20647e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.385e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeDepth
all individuals: 122
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10762
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2741
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1191
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5550
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6083
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121430692859264e-5
allele num: 47138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

DP
type: SiteQuality
SIO_000300: 9.20647e5

FS
type: SiteQuality
SIO_000300: 3.693e0

QD
type: SiteQuality
SIO_000300: 1.385e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422325
ensembl transcript: ENST00000510156
gene symbol: CAST
hgvsc: ENST00000510156.1:c.-39-51G>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000425721
ensembl transcript: ENST00000508830
gene symbol: CAST
hgvsc: ENST00000508830.1:c.211-51G>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-51G>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422957
ensembl transcript: ENST00000505143
gene symbol: CAST
hgvsc: ENST00000505143.1:c.196-51G>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000379157
ensembl transcript: ENST00000395812
gene symbol: CAST
hgvsc: ENST00000395812.2:c.211-51G>C
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 10644
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3624
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1247
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5894
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12960
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 696
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11082
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1379
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6618
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2047
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 812
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4603
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549282682118179e-5
allele num: 64546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.942e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.721851e6

VQSLOD
type: SiteQuality
SIO_000300: -5.095e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000425721
ensembl transcript: ENST00000508830
gene symbol: CAST
hgvsc: ENST00000508830.1:c.211-50A>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000379157
ensembl transcript: ENST00000395812
gene symbol: CAST
hgvsc: ENST00000395812.2:c.211-50A>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422677
ensembl transcript: ENST00000508608
gene symbol: CAST
hgvsc: ENST00000508608.1:c.166-50A>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422831
ensembl transcript: ENST00000508197
gene symbol: CAST
hgvsc: ENST00000508197.1:c.-39-50A>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422957
ensembl transcript: ENST00000505143
gene symbol: CAST
hgvsc: ENST00000505143.1:c.196-50A>T
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 3627
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5890
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1378
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 812
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13244
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2045
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10664
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1247
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10774
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 696
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547316952404531e-5
allele num: 64628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.745e-1

QD
type: SiteQuality
SIO_000300: 1.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.723346e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000312523
ensembl transcript: ENST00000309190
gene symbol: CAST
hgvsc: ENST00000309190.5:c.-39-46T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422325
ensembl transcript: ENST00000510156
gene symbol: CAST
hgvsc: ENST00000510156.1:c.-39-46T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-46T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000343421
ensembl transcript: ENST00000338252
gene symbol: CAST
hgvsc: ENST00000338252.3:c.-39-46T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422612
ensembl transcript: ENST00000514845
gene symbol: CAST
hgvsc: ENST00000514845.1:c.166-46T>C
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 2049
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5831
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6744
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15233
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3631
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1247
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10878
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1362
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 696
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 812
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8523
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165228113440197e-5
allele num: 16220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.735781e6

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000379157
ensembl transcript: ENST00000395812
gene symbol: CAST
hgvsc: ENST00000395812.2:c.211-44G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000352098
ensembl transcript: ENST00000359176
gene symbol: CAST
hgvsc: ENST00000359176.4:c.211-44G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000426946
ensembl transcript: ENST00000509903
gene symbol: CAST
hgvsc: ENST00000509903.1:c.-39-44G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000423638
ensembl transcript: ENST00000511782
gene symbol: CAST
hgvsc: ENST00000511782.1:c.-101-44G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000425670
ensembl transcript: ENST00000504465
gene symbol: CAST
hgvsc: ENST00000504465.1:c.-39-44G>A
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1358
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2052
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7166
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5715
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16355
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6842
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3639
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11133
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1247
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 697
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10368
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6157
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546838262591263e-5
allele num: 64648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.826125330979699e-5
allele num: 11330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 1.745519e6

QD
type: SiteQuality
SIO_000300: 1.237e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000423638
ensembl transcript: ENST00000511782
gene symbol: CAST
hgvsc: ENST00000511782.1:c.-101-35G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000352098
ensembl transcript: ENST00000359176
gene symbol: CAST
hgvsc: ENST00000359176.4:c.211-35G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-35G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000320319
ensembl transcript: ENST00000325674
gene symbol: CAST
hgvsc: ENST00000325674.7:c.211-35G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422677
ensembl transcript: ENST00000508608
gene symbol: CAST
hgvsc: ENST00000508608.1:c.166-35G>A
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 583
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 21173
bin: 2.25e1
variant carriers: 12

GenotypeDepth
all individuals: 944
bin: 9.75e1
variant carriers: 11

GenotypeDepth
all individuals: 815
bin: 5.25e1
variant carriers: 9

GenotypeDepth
all individuals: 3696
bin: 3.75e1
variant carriers: 22

GenotypeDepth
all individuals: 695
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 4102
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 12100
bin: 2.75e1
variant carriers: 16

GenotypeDepth
all individuals: 2504
bin: 1.75e1
variant carriers: 7

GenotypeDepth
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1259
bin: 4.75e1
variant carriers: 12

GenotypeDepth
all individuals: 7356
bin: 3.25e1
variant carriers: 19

GenotypeDepth
all individuals: 1278
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 7.25e1
variant carriers: 7

GenotypeDepth
all individuals: 391
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 263
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 495
bin: 6.75e1
variant carriers: 5

GenotypeDepth
all individuals: 328
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2068
bin: 4.25e1
variant carriers: 15

GenotypeDepth
all individuals: 201
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 478
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10480
bin: 9.75e1
variant carriers: 148

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6697
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 145
allele frequency: 1.417399804496579e-2
allele num: 10230
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541307028360049e-5
allele num: 64880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.406062742333451e-4
allele num: 11348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.973e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.38e0

QD
type: SiteQuality
SIO_000300: 1.449e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 1.797173e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl transcript: ENST00000507487
gene symbol: CAST
hgvsc: ENST00000507487.1:n.231-33A>G
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000339914
ensembl transcript: ENST00000341926
gene symbol: CAST
hgvsc: ENST00000341926.3:c.-39-33A>G
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000426422
ensembl transcript: ENST00000512620
gene symbol: CAST
hgvsc: ENST00000512620.1:c.159-33A>G
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000343421
ensembl transcript: ENST00000338252
gene symbol: CAST
hgvsc: ENST00000338252.3:c.-39-33A>G
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000426946
ensembl transcript: ENST00000509903
gene symbol: CAST
hgvsc: ENST00000509903.1:c.-39-33A>G
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22104
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3572
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2075
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1879
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3699
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12293
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1251
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 695
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 813
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 945
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1252
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4025
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53817756721836e-5
allele num: 65012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

QD
type: SiteQuality
SIO_000300: 1.659e1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 2.515e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

DP
type: SiteQuality
SIO_000300: 1.807552e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000352098
ensembl transcript: ENST00000359176
gene symbol: CAST
hgvsc: ENST00000359176.4:c.211-30G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000425670
ensembl transcript: ENST00000504465
gene symbol: CAST
hgvsc: ENST00000504465.1:c.-39-30G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000426946
ensembl transcript: ENST00000509903
gene symbol: CAST
hgvsc: ENST00000509903.1:c.-39-30G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422831
ensembl transcript: ENST00000508197
gene symbol: CAST
hgvsc: ENST00000508197.1:c.-39-30G>A
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-30G>A
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 814
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2660
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3737
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7712
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 695
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22921
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1210
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2079
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1123
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1260
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 946
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 491
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12843
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10422
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.273334505185445e-4
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.418e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

DP
type: SiteQuality
SIO_000300: 1.828529e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422957
ensembl transcript: ENST00000505143
gene symbol: CAST
hgvsc: ENST00000505143.1:c.196-30G>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000312523
ensembl transcript: ENST00000309190
gene symbol: CAST
hgvsc: ENST00000309190.5:c.-39-30G>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000339914
ensembl transcript: ENST00000341926
gene symbol: CAST
hgvsc: ENST00000341926.3:c.-39-30G>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl transcript: ENST00000507487
gene symbol: CAST
hgvsc: ENST00000507487.1:n.231-30G>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422677
ensembl transcript: ENST00000508608
gene symbol: CAST
hgvsc: ENST00000508608.1:c.166-30G>T
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 1210
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 586
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1123
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2079
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7712
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1260
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 491
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12843
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 814
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 695
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22921
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3737
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2660
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 946
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23392
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1553
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.788890841975742e-5
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 1.828529e6

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000379158
ensembl transcript: ENST00000395813
gene symbol: CAST
hgvsc: ENST00000395813.1:c.211-24T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000426946
ensembl transcript: ENST00000509903
gene symbol: CAST
hgvsc: ENST00000509903.1:c.-39-24T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000343421
ensembl transcript: ENST00000338252
gene symbol: CAST
hgvsc: ENST00000338252.3:c.-39-24T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422612
ensembl transcript: ENST00000514845
gene symbol: CAST
hgvsc: ENST00000514845.1:c.166-24T>C
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-24T>C
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 2076
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7858
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 946
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 696
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13501
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 860
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1600
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 814
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3744
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 644
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 24010
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524483200195134e-5
allele num: 65596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.484e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.851214e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 1.452e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl transcript: ENST00000507487
gene symbol: CAST
hgvsc: ENST00000507487.1:n.231-13C>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422957
ensembl transcript: ENST00000505143
gene symbol: CAST
hgvsc: ENST00000505143.1:c.196-13C>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000425670
ensembl transcript: ENST00000504465
gene symbol: CAST
hgvsc: ENST00000504465.1:c.-39-13C>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000422176
ensembl transcript: ENST00000510756
gene symbol: CAST
hgvsc: ENST00000510756.1:c.211-13C>T
variant of: http://identifiers.org/hgnc/1515

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000153113
ensembl protein: ENSP00000339914
ensembl transcript: ENST00000341926
gene symbol: CAST
hgvsc: ENST00000341926.3:c.-39-13C>T
variant of: http://identifiers.org/hgnc/1515

GenotypeDepth
all individuals: 14140
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2081
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 814
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25331
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3771
bin: 3.75e1
variant carriers: 0