9-101832156-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832156
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832156
    reference: chr 9
allele count: 7
allele frequency: 5.778819799887726e-5
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.4155C>T
  hgvsp: ENST00000375001.3:c.4155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1385Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8634
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 906
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-101832157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832157
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832157
    reference: chr 9
allele count: 3
allele frequency: 2.477209671026556e-5
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.4156G>A
  hgvsp: ENSP00000364140.3:p.Ala1386Thr
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1386Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10392
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.085686465433301e-5
  allele num: 16432
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-101832160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832160
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832160
    reference: chr 9
allele count: 3
allele frequency: 2.4786833234186e-5
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.4159A>G
  hgvsp: ENSP00000364140.3:p.Arg1387Gly
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38102
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1387Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8632
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11534
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-101832160-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832160
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832160
    reference: chr 9
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.4159A>T
  hgvsp: ENSP00000364140.3:p.Arg1387Trp
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg1387Trp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.502584445245823e-5
  allele num: 66552
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-101832198-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832198
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832197
    reference: chr 9
allele count: 1
allele frequency: 8.56091088091773e-6
allele num: 116810
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*32delA
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.550339524355834e-5
  allele num: 64502
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15542
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6568
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
reference allele: CA
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-101832206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832206
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832206
    reference: chr 9
allele count: 2
allele frequency: 1.725982947288481e-5
allele num: 115876
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*38T>C
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16297
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11126
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7910
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.300897619357356e-4
  allele num: 15374
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

9-101832211-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832211
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832211
    reference: chr 9
allele count: 1
allele frequency: 8.740800307676171e-6
allele num: 114406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*43T>G
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5867
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4858
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12805
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 667
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.648052120728626e-5
  allele num: 15042
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6530
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 862
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-101832212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832212
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832212
    reference: chr 9
allele count: 176
allele frequency: 1.539672819525851e-3
allele num: 114310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*44G>A
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1134
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14482
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
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  variant carriers: 9
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2270
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2942
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genotype quality: GenotypeQuality
  all individuals: 474
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genotype quality: GenotypeQuality
  all individuals: 711
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genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 8.25e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 13
  allele frequency: 1.185050136736554e-3
  allele num: 10970
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 862
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 37
  allele frequency: 5.845920495481261e-4
  allele num: 63292
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-101832214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832214
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832214
    reference: chr 9
allele count: 62
allele frequency: 5.438978173906941e-4
allele num: 113992
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*46G>A
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14419
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 414
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 59
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
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  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 6504
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12510
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.016880211511084e-4
  allele num: 9834
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14962
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 12
  allele frequency: 1.838235294117647e-3
  allele num: 6528
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-101832219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832219
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832219
    reference: chr 9
allele count: 1
allele frequency: 8.873271930291576e-6
allele num: 112698
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*51G>A
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5928
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 6268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 7121
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 896
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 854
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10790
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62512
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

9-101832831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832831
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832831
    reference: chr 9
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*663T>C
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 110
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 844
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 289
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2230
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 134
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-101832883-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832883
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832883
    reference: chr 9
allele count: 1
allele frequency: 9.203018590097552e-5
allele num: 10866
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*715C>G
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 150
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 116
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

9-101832888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832888
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832888
    reference: chr 9
allele count: 1
allele frequency: 9.057971014492754e-5
allele num: 11040
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*720C>T
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 637
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 154
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 118
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 112
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-101832948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832948
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832948
    reference: chr 9
allele count: 1
allele frequency: 8.318083513558476e-5
allele num: 12022
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*780G>A
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 162
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 130
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

9-101832993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101832993
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101832993
    reference: chr 9
allele count: 1
allele frequency: 8.279516476237788e-5
allele num: 12078
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204291
  ensembl protein: ENSP00000364140
  ensembl transcript: ENST00000375001
  gene symbol: COL15A1
  hgvsc: ENST00000375001.3:c.*825A>G
  variant of: http://identifiers.org/hgnc/2192
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 132
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 198
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3532
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

9-101867486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101867486
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101867486
    reference: chr 9
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.-2C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-111+1098C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.-2C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-111+1098C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

9-101867537-T-TGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101867537
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101867540
    reference: chr 9
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: TGGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.76_78dupGCG
  hgvsp: ENSP00000364129.2:p.Ala26dup
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.76_78dupGCG
  hgvsp: ENSP00000447297.1:p.Ala26dup
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.76_78dupGCG
  hgvsp: ENSP00000446685.1:p.Ala26dup
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-111+1175_-111+1177dupGCG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-111+1175_-111+1177dupGCG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.76_78dupGCG
  hgvsp: ENSP00000364133.4:p.Ala26dup
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala26dup
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

9-101867537-TGGCGGCGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101867537
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101867528
    reference: chr 9
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.70_78delGCGGCGGCG
  hgvsp: ENSP00000364133.4:p.Ala24_Ala26del
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.70_78delGCGGCGGCG
  hgvsp: ENSP00000446685.1:p.Ala24_Ala26del
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.70_78delGCGGCGGCG
  hgvsp: ENSP00000364129.2:p.Ala24_Ala26del
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.70_78delGCGGCGGCG
  hgvsp: ENSP00000447297.1:p.Ala24_Ala26del
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala24_Ala26del
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: TGGCGGCGGC
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-101890182-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890182
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890182
    reference: chr 9
allele count: 1
allele frequency: 9.372071227741331e-5
allele num: 10670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-213C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-955C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-955C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-955C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-955C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-213C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-955C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-955C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-101890227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890227
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890227
    reference: chr 9
allele count: 817
allele frequency: 7.6e-2
allele num: 10750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-168C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-910C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-910C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-910C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.12C>T
  hgvsp: ENST00000546584.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-168C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-168C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-910C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-910C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-910C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 10
hgvs: p.Ile4Ile
num of homozygotes: 60
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

9-101890252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890252
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890252
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 10750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-885A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-885A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-885A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.37A>G
  hgvsp: ENSP00000447707.1:p.Ile13Val
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-885A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-885A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-885A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ile13Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

9-101890262-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890262
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890262
    reference: chr 9
allele count: 1
allele frequency: 9.305788200260562e-5
allele num: 10746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-875G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-875G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-133G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-875G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-875G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-133G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-133G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.47G>C
  hgvsp: ENSP00000447707.1:p.Arg16Thr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-875G>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-875G>C
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg16Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/9-101890268-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890268
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890267
    reference: chr 9
allele count: 1
allele frequency: 9.307520476545048e-5
allele num: 10744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-123delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-865delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-123delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-865delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-865delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.57delA
  hgvsp: ENSP00000447707.1:p.Lys19AsnfsTer2
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-865delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-865delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-123delA
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-865delA
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys19AsnfsTer2
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: CA
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-101890294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890294
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890294
    reference: chr 9
allele count: 2
allele frequency: 1.866368047779022e-4
allele num: 10716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-111+10A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-843A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-843A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.69+10A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-111+10A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-843A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-111+10A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-843A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-843A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-843A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-101890316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890316
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890316
    reference: chr 9
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-111+32C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-111+32C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-111+32C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-821C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-821C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-821C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.69+32C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-821C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-821C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-821C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-101890907-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890907
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890907
    reference: chr 9
allele count: 2
allele frequency: 1.751620248730075e-4
allele num: 11418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-211C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-230C>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-230C>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

9-101890926-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890926
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890926
    reference: chr 9
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-192A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-211A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-211A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-101890935-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890935
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890935
    reference: chr 9
allele count: 1
allele frequency: 8.549931600547196e-5
allele num: 11696
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-183T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-202T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-202T>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

9-101890943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890943
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890943
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 11844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-175C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-194C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-194C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-101890946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890946
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890946
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 11932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-172G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-191G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-191G>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

9-101890954-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890954
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890952
    reference: chr 9
allele count: 1
allele frequency: 8.18732601932209e-5
allele num: 12214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-182_98-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-182_-110-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-182_98-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-163_70-162delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-182_98-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-182_98-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-182_-110-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-182_-110-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-182_-110-181delGT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-182_-110-181delGT
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: GGT
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-101890959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890959
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890959
    reference: chr 9
allele count: 1
allele frequency: 8.021819348628268e-5
allele num: 12466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-159T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-178T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-178T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

9-101890969-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890969
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890969
    reference: chr 9
allele count: 8
allele frequency: 6.134028523232633e-4
allele num: 13042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-149T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-168T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-168T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33304
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9237
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

9-101890973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890973
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890973
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 13492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-145A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-164A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-164A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12592
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-101890975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890975
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890975
    reference: chr 9
allele count: 1
allele frequency: 7.279079924297569e-5
allele num: 13738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-143C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-162C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-162C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30536
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-101890976-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890976
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890976
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 13960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-142T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-161T>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-161T>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14284
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

9-101890980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890980
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890980
    reference: chr 9
allele count: 1911
allele frequency: 1.186367022597467e-1
allele num: 16108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-138A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-157A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-157A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 700
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 27623
  bin: 2.5e0
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17789
  bin: 7.5e0
  variant carriers: 1926
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 155
num of homozygotes: 200
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

9-101890984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890984
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890984
    reference: chr 9
allele count: 1
allele frequency: 5.862351975612616e-5
allele num: 17058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-134G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-153G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-153G>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19678
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25691
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

9-101890994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890994
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890994
    reference: chr 9
allele count: 2
allele frequency: 9.798157946306095e-5
allele num: 20412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-124G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-143G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-143G>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25508
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21951
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23093
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

9-101890997-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101890997
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101890996
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 21456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-115delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-134delT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-134delT
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26567
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: GT
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

9-101891069-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891069
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891070
    reference: chr 9
allele count: 13
allele frequency: 1.117184008799973e-4
allele num: 116364
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-48dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-67dupG
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-67dupG
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17275
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13959
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

9-101891071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891071
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891071
    reference: chr 9
allele count: 12
allele frequency: 1.031991744066047e-4
allele num: 116280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-66T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-47T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14613
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-101891076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891076
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891076
    reference: chr 9
allele count: 2
allele frequency: 1.717062449561291e-5
allele num: 116478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-42A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-61A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-61A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

9-101891077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891077
    reference: chr 9
allele count: 3
allele frequency: 2.574267620861865e-5
allele num: 116538
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-41T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-60T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-60T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17839
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

9-101891091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891091
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891091
    reference: chr 9
allele count: 2
allele frequency: 1.709167977028783e-5
allele num: 117016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-27A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-46A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-46A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18770
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

9-101891092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891092
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891092
    reference: chr 9
allele count: 3
allele frequency: 2.563094851596808e-5
allele num: 117046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-26C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-45C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-45C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

9-101891100-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891100
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891100
    reference: chr 9
allele count: 3
allele frequency: 2.54880970586736e-5
allele num: 117702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-18C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-37C>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-37C>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

9-101891106-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891106
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891107
    reference: chr 9
allele count: 5
allele frequency: 4.231335578762081e-5
allele num: 118166
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-6dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-25dupT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-25dupT
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

9-101891106-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891106
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891106
    reference: chr 9
allele count: 1
allele frequency: 8.462671157524161e-6
allele num: 118166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-12A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-31A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-31A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

9-101891113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891113
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891113
    reference: chr 9
allele count: 1
allele frequency: 8.430423713095819e-6
allele num: 118618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-24C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-5C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-24C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.25e1
  variant carriers: 0
hgvs: c.70-5C>T
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

9-101891114-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891114
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891114
    reference: chr 9
allele count: 1
allele frequency: 8.426019548365353e-6
allele num: 118680
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-4T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-23T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-23T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: c.70-4T>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

9-101891115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891115
    reference: chr 9
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-22A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.70-3A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-22A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.25e1
  variant carriers: 0
hgvs: c.70-3A>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/9-101891119-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891119
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891119
    reference: chr 9
allele count: 1
allele frequency: 8.394614015647561e-6
allele num: 119124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.71A>C
  hgvsp: ENSP00000447707.1:p.Asn24Thr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-18A>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-18A>C
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn24Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

9-101891125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891125
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891125
    reference: chr 9
allele count: 1
allele frequency: 8.366100560528738e-6
allele num: 119530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.77C>T
  hgvsp: ENSP00000447707.1:p.Ser26Phe
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-12C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-12C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser26Phe
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-101891127-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891127
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891125
    reference: chr 9
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.83_84delTT
  hgvsp: ENSP00000447707.1:p.Phe28SerfsTer43
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-6_-110-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-6_98-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-6_-110-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-6_98-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-6_98-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-6_98-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-6_-110-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-6_-110-5delTT
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-6_-110-5delTT
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe28SerfsTer43
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: CTT
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-101891131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891131
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891131
    reference: chr 9
allele count: 2
allele frequency: 1.668669069550127e-5
allele num: 119856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.83T>C
  hgvsp: ENSP00000447707.1:p.Phe28Ser
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-6T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-6T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe28Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

9-101891132-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891132
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891132
    reference: chr 9
allele count: 4
allele frequency: 3.335835209740639e-5
allele num: 119910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.98-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.98-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.98-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.84T>C
  hgvsp: ENST00000546584.1:c.84T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-110-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.98-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-110-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-110-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-110-5T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-110-5T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: c.98-5T>C
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-101891138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891138
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891138
    reference: chr 9
allele count: 2
allele frequency: 1.660881263598465e-5
allele num: 120418
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.99G>A
  hgvsp: ENST00000374994.4:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-109G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.99G>A
  hgvsp: ENST00000552516.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.99G>A
  hgvsp: ENST00000374990.2:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.99G>A
  hgvsp: ENST00000549766.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.90G>A
  hgvsp: ENST00000546584.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.99G>A
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

9-101891138-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891138
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891138
    reference: chr 9
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.99G>T
  hgvsp: ENST00000549766.1:c.99G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.99G>T
  hgvsp: ENST00000374990.2:c.99G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-109G>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.90G>T
  hgvsp: ENST00000546584.1:c.90G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.99G>T
  hgvsp: ENST00000374994.4:c.99G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.99G>T
  hgvsp: ENST00000552516.1:c.99G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.99G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-101891143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891143
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891143
    reference: chr 9
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.95A>G
  hgvsp: ENSP00000447707.1:p.Gln32Arg
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-104A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.104A>G
  hgvsp: ENSP00000447297.1:p.Gln35Arg
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.104A>G
  hgvsp: ENSP00000446685.1:p.Gln35Arg
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-104A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-104A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.104A>G
  hgvsp: ENSP00000364129.2:p.Gln35Arg
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.104A>G
  hgvsp: ENSP00000364133.4:p.Gln35Arg
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-104A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-104A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln35Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

9-101891159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891159
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891159
    reference: chr 9
allele count: 11
allele frequency: 9.096923585841879e-5
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.120C>T
  hgvsp: ENST00000374990.2:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-88C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.120C>T
  hgvsp: ENST00000552516.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-88C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-88C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-88C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.120C>T
  hgvsp: ENST00000374994.4:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.111C>T
  hgvsp: ENST00000546584.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.120C>T
  hgvsp: ENST00000549766.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-88C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20184
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu40Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/9-101891163-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891163
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891162
    reference: chr 9
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-83delC
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.125delC
  hgvsp: ENSP00000364129.2:p.Thr42LysfsTer8
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-83delC
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.125delC
  hgvsp: ENSP00000446685.1:p.Thr42LysfsTer8
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-83delC
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.125delC
  hgvsp: ENSP00000447297.1:p.Thr42LysfsTer8
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-83delC
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.116delC
  hgvsp: ENSP00000447707.1:p.Thr39LysfsTer8
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.125delC
  hgvsp: ENSP00000364133.4:p.Thr42LysfsTer8
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-83delC
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr42LysfsTer8
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: AC
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-101891173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891173
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891173
    reference: chr 9
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  clinical significance: risk_factor
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.134A>G
  hgvsp: ENSP00000364133.4:p.Asn45Ser
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.125A>G
  hgvsp: ENSP00000447707.1:p.Asn42Ser
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.134A>G
  hgvsp: ENSP00000446685.1:p.Asn45Ser
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-74A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.134A>G
  hgvsp: ENSP00000364129.2:p.Asn45Ser
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  clinical significance: risk_factor
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.134A>G
  hgvsp: ENSP00000447297.1:p.Asn45Ser
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn45Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

9-101891174-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891174
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891174
    reference: chr 9
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.126T>C
  hgvsp: ENST00000546584.1:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-73T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-73T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-73T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.135T>C
  hgvsp: ENST00000374994.4:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-73T>C
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.135T>C
  hgvsp: ENST00000549766.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.135T>C
  hgvsp: ENST00000374990.2:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.135T>C
  hgvsp: ENST00000552516.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-73T>C
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn45Asn
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

9-101891180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891180
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891180
    reference: chr 9
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.141T>A
  hgvsp: ENST00000374994.4:c.141T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-67T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.132T>A
  hgvsp: ENST00000546584.1:c.132T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-67T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.141T>A
  hgvsp: ENST00000552516.1:c.141T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-67T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-67T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.141T>A
  hgvsp: ENST00000549766.1:c.141T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.141T>A
  hgvsp: ENST00000374990.2:c.141T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-67T>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr47Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-101891195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891195
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891195
    reference: chr 9
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.156G>A
  hgvsp: ENST00000374994.4:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.156G>A
  hgvsp: ENST00000549766.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.147G>A
  hgvsp: ENST00000546584.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.156G>A
  hgvsp: ENST00000552516.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.156G>A
  hgvsp: ENST00000374990.2:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39745
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly52Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

9-101891227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891227
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891227
    reference: chr 9
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.188A>G
  hgvsp: ENSP00000364133.4:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.179A>G
  hgvsp: ENSP00000447707.1:p.Asp60Gly
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.188A>G
  hgvsp: ENSP00000364129.2:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.188A>G
  hgvsp: ENSP00000447297.1:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.188A>G
  hgvsp: ENSP00000446685.1:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp63Gly
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-101891231-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891231
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891231
    reference: chr 9
allele count: 30
allele frequency: 2.478970070568014e-4
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.183A>G
  hgvsp: ENST00000546584.1:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.192A>G
  hgvsp: ENST00000374994.4:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.192A>G
  hgvsp: ENST00000374990.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-16A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.192A>G
  hgvsp: ENST00000552516.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.192A>G
  hgvsp: ENST00000549766.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6468
  bin: 9.75e1
  variant carriers: 30
hgvs: p.Lys64Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

9-101891234-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891234
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891234
    reference: chr 9
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.195T>A
  hgvsp: ENST00000374990.2:c.195T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.195T>A
  hgvsp: ENST00000552516.1:c.195T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.195T>A
  hgvsp: ENST00000549766.1:c.195T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.186T>A
  hgvsp: ENST00000546584.1:c.186T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-13T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-13T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-13T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-13T>A
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.195T>A
  hgvsp: ENST00000374994.4:c.195T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-13T>A
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val65Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-101891238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891238
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891238
    reference: chr 9
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.199C>T
  hgvsp: ENSP00000364133.4:p.His67Tyr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.199C>T
  hgvsp: ENSP00000364129.2:p.His67Tyr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.199C>T
  hgvsp: ENSP00000446685.1:p.His67Tyr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.190C>T
  hgvsp: ENSP00000447707.1:p.His64Tyr
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.199C>T
  hgvsp: ENSP00000447297.1:p.His67Tyr
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6442
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His67Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

9-101891246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101891246
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 101891246
    reference: chr 9
allele count: 13
allele frequency: 1.074397923932627e-4
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449934
  ensembl transcript: ENST00000547314
  gene symbol: TGFBR1
  hgvsc: ENST00000547314.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447182
  ensembl transcript: ENST00000552573
  gene symbol: TGFBR1
  hgvsc: ENST00000552573.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000446685
  ensembl transcript: ENST00000549766
  gene symbol: TGFBR1
  hgvsc: ENST00000549766.1:c.207C>T
  hgvsp: ENST00000549766.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000450052
  ensembl transcript: ENST00000550253
  gene symbol: TGFBR1
  hgvsc: ENST00000550253.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447707
  ensembl transcript: ENST00000546584
  gene symbol: TGFBR1
  hgvsc: ENST00000546584.1:c.198C>T
  hgvsp: ENST00000546584.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364129
  ensembl transcript: ENST00000374990
  gene symbol: TGFBR1
  hgvsc: ENST00000374990.2:c.207C>T
  hgvsp: ENST00000374990.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000364133
  ensembl transcript: ENST00000374994
  gene symbol: TGFBR1
  hgvsc: ENST00000374994.4:c.207C>T
  hgvsp: ENST00000374994.4:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000447297
  ensembl transcript: ENST00000552516
  gene symbol: TGFBR1
  hgvsc: ENST00000552516.1:c.207C>T
  hgvsp: ENST00000552516.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000449028
  ensembl transcript: ENST00000549021
  gene symbol: TGFBR1
  hgvsc: ENST00000549021.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11772
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106799
  ensembl protein: ENSP00000448518
  ensembl transcript: ENST00000548365
  gene symbol: TGFBR1
  hgvsc: ENST00000548365.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11772
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20603
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser69Ser
num of homozygotes: 0
reference allele: C

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.432794063982484e-4
allele num: 16442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.795991e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.654e0

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

DP
type: SiteQuality
SIO_000300: 1.794904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

South Asian
type: Population
allele count: 3
allele frequency: 1.828599292941607e-4
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.367e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 2.415e0

DP
type: SiteQuality
SIO_000300: 1.793032e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10388
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.793032e6

QD
type: SiteQuality
SIO_000300: 1.367e1

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 2.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

East Asian
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allele frequency: 0.0e0
allele num: 8054
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Latino
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African
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Other
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

Other
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allele count: 0
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European (Non-Finnish)
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African
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
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ReadPosRankSum
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SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

European (Non-Finnish)
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African
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Latino
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East Asian
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InbreedingCoeff
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SIO_000300: 1.1e-3

DP
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
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African
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 6.129328838492185e-4
allele num: 6526
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FS
type: SiteQuality
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QD
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

East Asian
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Other
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European (Non-Finnish)
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allele frequency: 7.601190853233674e-4
allele num: 63148
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Latino
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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SIO_000300: -1.3e-3

QD
type: SiteQuality
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DP
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European (Finnish)
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East Asian
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South Asian
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African
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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Latino
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African
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Other
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South Asian
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allele num: 5636
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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South Asian
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allele num: 7334
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African
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allele count: 0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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MQ
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QD
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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South Asian
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allele num: 7400
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African
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European (Finnish)
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2938
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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DP
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ClippingRankSum
type: SiteQuality
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European (Non-Finnish)
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allele frequency: 2.885170225043277e-4
allele num: 3466
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African
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East Asian
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South Asian
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FS
type: SiteQuality
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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African
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South Asian
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allele num: 7476
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2
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Latino
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allele frequency: 0.0e0
allele num: 184
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele num: 0
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: NaN
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South Asian
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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BaseQRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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MQRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: NaN
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African
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Latino
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Other
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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DP
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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East Asian
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VQSLOD
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DP
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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VQSLOD
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DP
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InbreedingCoeff
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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Other
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European (Finnish)
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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East Asian
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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FS
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MQRankSum
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DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 7458
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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QD
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SIO_000300: 9.470000000000001e0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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QD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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SIO_000300: 7.47e-1

MQ
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QD
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FS
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -8.459999999999999e-2

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.666666666666667e-4
allele num: 3750
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.71e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

QD
type: SiteQuality
SIO_000300: 1.656e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 196
num of homozygotes: 0

East Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.85431e5

MQRankSum
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SIO_000300: 5.72e-1

ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.07e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.894836570345808e-3
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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BaseQRankSum
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DP
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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South Asian
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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QD
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MQ
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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QD
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 1063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

VQSLOD
type: SiteQuality
SIO_000300: -1.627e0

DP
type: SiteQuality
SIO_000300: 3.50446e5

GenotypeQuality
all individuals: 2348
bin: 6.25e1
variant carriers: 44

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 51

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 89

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 86

GenotypeQuality
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bin: 3.75e1
variant carriers: 52

GenotypeQuality
all individuals: 25625
bin: 7.5e0
variant carriers: 176

GenotypeQuality
all individuals: 728
bin: 1.25e1
variant carriers: 174

GenotypeQuality
all individuals: 13844
bin: 2.25e1
variant carriers: 299

GenotypeQuality
all individuals: 2420
bin: 2.5e0
variant carriers: 6

GenotypeQuality
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bin: 5.25e1
variant carriers: 148

GenotypeQuality
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bin: 2.75e1
variant carriers: 140

GenotypeQuality
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bin: 8.75e1
variant carriers: 148

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 44

GenotypeQuality
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bin: 9.75e1
variant carriers: 1880

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 120

GenotypeQuality
all individuals: 623
bin: 7.75e1
variant carriers: 69

African
type: Population
allele count: 158
allele frequency: 1.740088105726872e-1
allele num: 908
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 1.029926156237855e-2
allele num: 5146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 6.626506024096386e-2
allele num: 332
num of homozygotes: 0

Latino
type: Population
allele count: 102
allele frequency: 2.65625e-1
allele num: 384
num of homozygotes: 11

Other
type: Population
allele count: 19
allele frequency: 1.104651162790698e-1
allele num: 172
num of homozygotes: 1

East Asian
type: Population
allele count: 574
allele frequency: 5.705765407554672e-1
allele num: 1006
num of homozygotes: 128

South Asian
type: Population
allele count: 983
allele frequency: 1.204656862745098e-1
allele num: 8160
num of homozygotes: 55

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.86e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.849e1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.96899e5

GenotypeQuality
all individuals: 1293
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.767408978437611e-4
allele num: 5658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.29e-2

QD
type: SiteQuality
SIO_000300: 1.451e1

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 4.12381e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 1660
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 3.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 886
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.610108303249098e-3
allele num: 554
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

DP
type: SiteQuality
SIO_000300: 4.77217e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
all individuals: 882
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 3671
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variant carriers: 0

GenotypeQuality
all individuals: 947
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variant carriers: 0

GenotypeQuality
all individuals: 550
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GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 1

GenotypeQuality
all individuals: 811
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GenotypeQuality
all individuals: 24277
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 288
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 740
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GenotypeQuality
all individuals: 940
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 4.94038e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 2236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
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GenotypeQuality
all individuals: 23582
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GenotypeQuality
all individuals: 475
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6476
bin: 9.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.406013411204845e-3
allele num: 9246
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.365e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 1.57712e6

GenotypeQuality
all individuals: 6458
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63674
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.299545159194282e-3
allele num: 9234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.603e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.580864e6

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6446
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2162
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63810
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.771165426850868e-4
allele num: 11292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

QD
type: SiteQuality
SIO_000300: 1.575e1

DP
type: SiteQuality
SIO_000300: 1.594993e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1792
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variant carriers: 0

GenotypeQuality
all individuals: 2019
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GenotypeQuality
all individuals: 918
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GenotypeQuality
all individuals: 944
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.24114088159032e-4
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63844
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 4.32e0

QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 1.597922e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557875058420315e-5
allele num: 64190
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.832361773538245e-5
allele num: 11322
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9300
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557438325442313e-5
allele num: 64208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.150075252633842e-4
allele num: 9302
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.638936137312509e-5
allele num: 64670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.670061e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.562e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.334267040149393e-4
allele num: 8568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.077585941587419e-5
allele num: 64986
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 1.67997e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.538792970793709e-5
allele num: 64986
num of homozygotes: 0

Other
type: Population
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 65292
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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African
type: Population
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Latino
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South Asian
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European (Non-Finnish)
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 5.82e0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

DP
type: SiteQuality
SIO_000300: 1.688983e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524622655892666e-5
allele num: 65590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.996e-1

FS
type: SiteQuality
SIO_000300: 1.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.494e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.694499e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.148e0

MQRankSum
type: SiteQuality
SIO_000300: -1.215e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.392e0

FS
type: SiteQuality
SIO_000300: 2.694e0

QD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.341e0

DP
type: SiteQuality
SIO_000300: 1.699118e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.056e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 4.459e0

DP
type: SiteQuality
SIO_000300: 1.700885e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.785e1

GenotypeQuality
all individuals: 757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028651038827306e-5
allele num: 66036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.702585e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 6459
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-5
allele num: 66060
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618257985686857e-4
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.703258e6

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.048e0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.912767644726408e-5
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.189e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.708572e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.646e0

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6682
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.708572e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 2.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.189e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

BaseQRankSum
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SIO_000300: -1.708e0

DP
type: SiteQuality
SIO_000300: 1.71076e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.591e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.504121292341014e-4
allele num: 66484
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.82e0

ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.997e1

VQSLOD
type: SiteQuality
SIO_000300: -4.132e-1

ClippingRankSum
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SIO_000300: 1.73e-1

MQRankSum
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SIO_000300: 1.73e0

BaseQRankSum
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SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 1.1402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 7.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.675e0

DP
type: SiteQuality
SIO_000300: 1.713758e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.151e0

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.714403e6

QD
type: SiteQuality
SIO_000300: 1.59e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

East Asian
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.115e0

DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.403e-1

DP
type: SiteQuality
SIO_000300: 1.714365e6

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 2.598652550529355e-3
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006072265977274e-5
allele num: 66532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.715677e6

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.744e0

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 9.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.714358e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.402e0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.485e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.714504e6

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0