6-128411182-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128411182
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128411182
    reference: chr 6
allele count: 1
allele frequency: 8.676639017110332e-6
allele num: 115252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1320-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1404-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1163-45C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*657-45C>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

6-128411188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128411188
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128411188
    reference: chr 6
allele count: 3
allele frequency: 2.627016234960332e-5
allele num: 114198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1320-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1404-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*657-51A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1163-51A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-128505526-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505526
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505526
    reference: chr 6
allele count: 1
allele frequency: 1.123166430801716e-5
allele num: 89034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+51G>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

6-128505530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505530
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505530
    reference: chr 6
allele count: 12
allele frequency: 1.340153224185299e-4
allele num: 89542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+47A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18699
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

6-128505539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505539
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505539
    reference: chr 6
allele count: 12
allele frequency: 1.324795760653566e-4
allele num: 90580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+38G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+38G>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

6-128505547-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505547
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505547
    reference: chr 6
allele count: 1
allele frequency: 1.068033749866496e-5
allele num: 93630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+30T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+30T>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-128505549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505549
    reference: chr 6
allele count: 10
allele frequency: 1.055520371543171e-4
allele num: 94740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+28C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24880
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

6-128505557-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505557
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505557
    reference: chr 6
allele count: 1
allele frequency: 9.948466941244355e-6
allele num: 100518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+20C>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7270
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-128505558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505558
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505558
    reference: chr 6
allele count: 3
allele frequency: 2.962026816216109e-5
allele num: 101282
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+19C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+19C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-128505559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505559
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505559
    reference: chr 6
allele count: 4138
allele frequency: 4.025918430884184e-2
allele num: 102784
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+18A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+18A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 2.75e1
  variant carriers: 673
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 1.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 31169
  bin: 2.25e1
  variant carriers: 746
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 7.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 3.25e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 8309
  bin: 2.25e1
  variant carriers: 10
num of homozygotes: 261
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

6-128505562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505562
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505562
    reference: chr 6
allele count: 1
allele frequency: 9.472746907148135e-6
allele num: 105566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+15C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-128505571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505571
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505571
    reference: chr 6
allele count: 2
allele frequency: 1.77050689612436e-5
allele num: 112962
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+6A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+6A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1162+6A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

6-128505572-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505572
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505572
    reference: chr 6
allele count: 2
allele frequency: 1.761897210916715e-5
allele num: 113514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1403+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*656+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1162+5G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1319+5G>C
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1162+5G>C
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

6-128505578-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505578
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505578
    reference: chr 6
allele count: 1
allele frequency: 8.576770674305711e-6
allele num: 116594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*655A>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1161A>C
  hgvsp: ENST00000368215.3:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.661A>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.611A>C
  hgvsp: ENST00000490332.2:c.611A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1161A>C
  hgvsp: ENST00000532331.1:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1161A>C
  hgvsp: ENST00000368227.3:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1318A>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1161A>C
  hgvsp: ENST00000368210.3:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1161A>C
  hgvsp: ENST00000368226.4:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1161A>C
  hgvsp: ENST00000368207.3:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1402A>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1161A>C
  hgvsp: ENST00000368213.5:c.1161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1161A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

6-128505588-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505588
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505588
    reference: chr 6
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1151C>G
  hgvsp: ENSP00000357210.3:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1151C>G
  hgvsp: ENSP00000357193.3:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1151C>G
  hgvsp: ENSP00000357190.3:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1308C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1151C>G
  hgvsp: ENSP00000357209.4:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1151C>G
  hgvsp: ENSP00000357196.5:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1151C>G
  hgvsp: ENSP00000432973.1:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.601C>G
  hgvsp: ENSP00000434058.1:p.Thr201Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1392C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.651C>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1151C>G
  hgvsp: ENSP00000357198.3:p.Thr384Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*645C>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr384Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-128505603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505603
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505603
    reference: chr 6
allele count: 4
allele frequency: 3.32723340542339e-5
allele num: 120220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1293C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1136C>T
  hgvsp: ENSP00000357196.5:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1136C>T
  hgvsp: ENSP00000357190.3:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1136C>T
  hgvsp: ENSP00000432973.1:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*630C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1377C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.636C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1136C>T
  hgvsp: ENSP00000357209.4:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.586C>T
  hgvsp: ENSP00000434058.1:p.Pro196Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1136C>T
  hgvsp: ENSP00000357210.3:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1136C>T
  hgvsp: ENSP00000357193.3:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1136C>T
  hgvsp: ENSP00000357198.3:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro379Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

6-128505603-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505603
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505603
    reference: chr 6
allele count: 4
allele frequency: 3.32723340542339e-5
allele num: 120220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.636C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.586C>A
  hgvsp: ENSP00000434058.1:p.Pro196Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1136C>A
  hgvsp: ENSP00000432973.1:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1136C>A
  hgvsp: ENSP00000357210.3:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1136C>A
  hgvsp: ENSP00000357190.3:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1377C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1293C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1136C>A
  hgvsp: ENSP00000357193.3:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1136C>A
  hgvsp: ENSP00000357196.5:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1136C>A
  hgvsp: ENSP00000357198.3:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1136C>A
  hgvsp: ENSP00000357209.4:p.Pro379Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*630C>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro379Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-128505604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505604
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505604
    reference: chr 6
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1135C>T
  hgvsp: ENSP00000357198.3:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1135C>T
  hgvsp: ENSP00000357196.5:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1376C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1135C>T
  hgvsp: ENSP00000357193.3:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*629C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1135C>T
  hgvsp: ENSP00000357210.3:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.585C>T
  hgvsp: ENSP00000434058.1:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1135C>T
  hgvsp: ENSP00000432973.1:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.635C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1292C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1135C>T
  hgvsp: ENSP00000357209.4:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1135C>T
  hgvsp: ENSP00000357190.3:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro379Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-128505620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505620
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505620
    reference: chr 6
allele count: 5
allele frequency: 4.135307253328923e-5
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1119G>A
  hgvsp: ENST00000368213.5:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1119G>A
  hgvsp: ENST00000368226.4:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1119G>A
  hgvsp: ENST00000368215.3:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1119G>A
  hgvsp: ENST00000532331.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1119G>A
  hgvsp: ENST00000368227.3:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*613G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1360G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.619G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1119G>A
  hgvsp: ENST00000368210.3:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.569G>A
  hgvsp: ENST00000490332.2:c.569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1276G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1119G>A
  hgvsp: ENST00000368207.3:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr373Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-128505621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505621
    reference: chr 6
allele count: 12
allele frequency: 9.920962994808029e-5
allele num: 120956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1118C>T
  hgvsp: ENSP00000357209.4:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1275C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.568C>T
  hgvsp: ENSP00000434058.1:p.Thr190Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1118C>T
  hgvsp: ENSP00000357190.3:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*612C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1118C>T
  hgvsp: ENSP00000357193.3:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1118C>T
  hgvsp: ENSP00000357210.3:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1118C>T
  hgvsp: ENSP00000357196.5:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1359C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1118C>T
  hgvsp: ENSP00000432973.1:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.618C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1118C>T
  hgvsp: ENSP00000357198.3:p.Thr373Met
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr373Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-128505622-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505622
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505622
    reference: chr 6
allele count: 2
allele frequency: 1.653275138048474e-5
allele num: 120972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1117A>T
  hgvsp: ENSP00000357198.3:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.617A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*611A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1117A>T
  hgvsp: ENSP00000357193.3:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.567A>T
  hgvsp: ENSP00000434058.1:p.Thr190Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1117A>T
  hgvsp: ENSP00000432973.1:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1117A>T
  hgvsp: ENSP00000357196.5:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1117A>T
  hgvsp: ENSP00000357210.3:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1117A>T
  hgvsp: ENSP00000357190.3:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1358A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1117A>T
  hgvsp: ENSP00000357209.4:p.Thr373Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1274A>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr373Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-128505626-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505626
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505626
    reference: chr 6
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1113T>C
  hgvsp: ENST00000368207.3:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.563T>C
  hgvsp: ENST00000490332.2:c.563T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1113T>C
  hgvsp: ENST00000532331.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1113T>C
  hgvsp: ENST00000368215.3:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1113T>C
  hgvsp: ENST00000368210.3:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1113T>C
  hgvsp: ENST00000368213.5:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1270T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1354T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1113T>C
  hgvsp: ENST00000368227.3:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*607T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.613T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1113T>C
  hgvsp: ENST00000368226.4:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly371Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

6-128505627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505627
    reference: chr 6
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1269G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1353G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1112G>A
  hgvsp: ENSP00000357190.3:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.612G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1112G>A
  hgvsp: ENSP00000357193.3:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1112G>A
  hgvsp: ENSP00000357196.5:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.562G>A
  hgvsp: ENSP00000434058.1:p.Gly188Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1112G>A
  hgvsp: ENSP00000357209.4:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1112G>A
  hgvsp: ENSP00000357210.3:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1112G>A
  hgvsp: ENSP00000432973.1:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*606G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1112G>A
  hgvsp: ENSP00000357198.3:p.Gly371Asp
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly371Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-128505628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505628
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505628
    reference: chr 6
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1268G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1111G>A
  hgvsp: ENSP00000357210.3:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*605G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1111G>A
  hgvsp: ENSP00000357193.3:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1352G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.611G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1111G>A
  hgvsp: ENSP00000357190.3:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1111G>A
  hgvsp: ENSP00000357209.4:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1111G>A
  hgvsp: ENSP00000357198.3:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.561G>A
  hgvsp: ENSP00000434058.1:p.Gly188Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1111G>A
  hgvsp: ENSP00000432973.1:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1111G>A
  hgvsp: ENSP00000357196.5:p.Gly371Ser
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly371Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-128505630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505630
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505630
    reference: chr 6
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1109A>G
  hgvsp: ENSP00000357196.5:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1109A>G
  hgvsp: ENSP00000357193.3:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1109A>G
  hgvsp: ENSP00000357190.3:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.559A>G
  hgvsp: ENSP00000434058.1:p.Glu187Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.609A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1109A>G
  hgvsp: ENSP00000357210.3:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1266A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1109A>G
  hgvsp: ENSP00000357209.4:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*603A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1109A>G
  hgvsp: ENSP00000432973.1:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1109A>G
  hgvsp: ENSP00000357198.3:p.Glu370Gly
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1350A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu370Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-128505631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505631
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505631
    reference: chr 6
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1108G>A
  hgvsp: ENSP00000357196.5:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1108G>A
  hgvsp: ENSP00000432973.1:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1108G>A
  hgvsp: ENSP00000357210.3:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1349G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1108G>A
  hgvsp: ENSP00000357198.3:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.558G>A
  hgvsp: ENSP00000434058.1:p.Glu187Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1108G>A
  hgvsp: ENSP00000357193.3:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1108G>A
  hgvsp: ENSP00000357209.4:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1265G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1108G>A
  hgvsp: ENSP00000357190.3:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.608G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*602G>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu370Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-128505633-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505633
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505633
    reference: chr 6
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1106G>C
  hgvsp: ENSP00000357196.5:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1106G>C
  hgvsp: ENSP00000357210.3:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1106G>C
  hgvsp: ENSP00000357209.4:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.556G>C
  hgvsp: ENSP00000434058.1:p.Gly186Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1106G>C
  hgvsp: ENSP00000432973.1:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*600G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1347G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1106G>C
  hgvsp: ENSP00000357193.3:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.606G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1106G>C
  hgvsp: ENSP00000357198.3:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1263G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1106G>C
  hgvsp: ENSP00000357190.3:p.Gly369Ala
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly369Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-128505647-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505647
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505647
    reference: chr 6
allele count: 2
allele frequency: 1.649892756970797e-5
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*586A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1249A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1333A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.542A>G
  hgvsp: ENST00000490332.2:c.542A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1092A>G
  hgvsp: ENST00000368227.3:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1092A>G
  hgvsp: ENST00000368226.4:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1092A>G
  hgvsp: ENST00000532331.1:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1092A>G
  hgvsp: ENST00000368213.5:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1092A>G
  hgvsp: ENST00000368210.3:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1092A>G
  hgvsp: ENST00000368207.3:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1092A>G
  hgvsp: ENST00000368215.3:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.592A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu364Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

6-128505654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505654
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505654
    reference: chr 6
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1085G>A
  hgvsp: ENSP00000357198.3:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.585G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1085G>A
  hgvsp: ENSP00000357196.5:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1085G>A
  hgvsp: ENSP00000357210.3:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.535G>A
  hgvsp: ENSP00000434058.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*579G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1085G>A
  hgvsp: ENSP00000357193.3:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1085G>A
  hgvsp: ENSP00000357190.3:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1085G>A
  hgvsp: ENSP00000432973.1:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1242G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1085G>A
  hgvsp: ENSP00000357209.4:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1326G>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg362Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-128505655-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505655
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505655
    reference: chr 6
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1084C>T
  hgvsp: ENSP00000432973.1:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1084C>T
  hgvsp: ENSP00000357190.3:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1084C>T
  hgvsp: ENSP00000357198.3:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1084C>T
  hgvsp: ENSP00000357196.5:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*578C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1084C>T
  hgvsp: ENSP00000357193.3:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1084C>T
  hgvsp: ENSP00000357209.4:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1084C>T
  hgvsp: ENSP00000357210.3:p.Arg362Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.534C>T
  hgvsp: ENSP00000434058.1:p.Arg179Ter
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1241C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.584C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg362Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-128505659-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505659
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505659
    reference: chr 6
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1080G>T
  hgvsp: ENSP00000357193.3:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1080G>T
  hgvsp: ENSP00000432973.1:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1237G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*574G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1080G>T
  hgvsp: ENSP00000357190.3:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.580G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.530G>T
  hgvsp: ENSP00000434058.1:p.Glu177Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1080G>T
  hgvsp: ENSP00000357198.3:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1080G>T
  hgvsp: ENSP00000357209.4:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1080G>T
  hgvsp: ENSP00000357196.5:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1321G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1080G>T
  hgvsp: ENSP00000357210.3:p.Glu360Asp
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu360Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-128505668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505668
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505668
    reference: chr 6
allele count: 133
allele frequency: 1.096382761235862e-3
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*565C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1071C>T
  hgvsp: ENST00000368213.5:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1071C>T
  hgvsp: ENST00000368227.3:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.521C>T
  hgvsp: ENST00000490332.2:c.521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1071C>T
  hgvsp: ENST00000368207.3:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1071C>T
  hgvsp: ENST00000368210.3:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.571C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1312C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1071C>T
  hgvsp: ENST00000368215.3:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1071C>T
  hgvsp: ENST00000532331.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1228C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1071C>T
  hgvsp: ENST00000368226.4:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Thr357Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-128505676-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505676
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505676
    reference: chr 6
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1063C>A
  hgvsp: ENSP00000357209.4:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1063C>A
  hgvsp: ENSP00000432973.1:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.513C>A
  hgvsp: ENSP00000434058.1:p.Pro172Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1220C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1063C>A
  hgvsp: ENSP00000357190.3:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1063C>A
  hgvsp: ENSP00000357193.3:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.563C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1063C>A
  hgvsp: ENSP00000357196.5:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1063C>A
  hgvsp: ENSP00000357198.3:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1063C>A
  hgvsp: ENSP00000357210.3:p.Pro355Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1304C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*557C>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro355Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-128505692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505692
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505692
    reference: chr 6
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1288A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1204A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1047A>G
  hgvsp: ENST00000368215.3:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1047A>G
  hgvsp: ENST00000368213.5:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1047A>G
  hgvsp: ENST00000532331.1:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1047A>G
  hgvsp: ENST00000368226.4:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.547A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1047A>G
  hgvsp: ENST00000368207.3:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*541A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.497A>G
  hgvsp: ENST00000490332.2:c.497A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1047A>G
  hgvsp: ENST00000368227.3:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1047A>G
  hgvsp: ENST00000368210.3:c.1047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys349Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

6-128505702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505702
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505702
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1037C>T
  hgvsp: ENSP00000357210.3:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1037C>T
  hgvsp: ENSP00000432973.1:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1194C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*531C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1278C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1037C>T
  hgvsp: ENSP00000357198.3:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1037C>T
  hgvsp: ENSP00000357209.4:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1037C>T
  hgvsp: ENSP00000357196.5:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.487C>T
  hgvsp: ENSP00000434058.1:p.Pro163Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1037C>T
  hgvsp: ENSP00000357193.3:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.537C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1037C>T
  hgvsp: ENSP00000357190.3:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro346Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

6-128505704-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505704
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505704
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1035T>C
  hgvsp: ENST00000368210.3:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*529T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.485T>C
  hgvsp: ENST00000490332.2:c.485T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1035T>C
  hgvsp: ENST00000368213.5:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1035T>C
  hgvsp: ENST00000368207.3:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1035T>C
  hgvsp: ENST00000532331.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1192T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1035T>C
  hgvsp: ENST00000368227.3:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.535T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1035T>C
  hgvsp: ENST00000368215.3:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1276T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1035T>C
  hgvsp: ENST00000368226.4:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala345Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

6-128505708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505708
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505708
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1031A>G
  hgvsp: ENSP00000357198.3:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1272A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1031A>G
  hgvsp: ENSP00000357193.3:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1031A>G
  hgvsp: ENSP00000357196.5:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1031A>G
  hgvsp: ENSP00000357210.3:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.481A>G
  hgvsp: ENSP00000434058.1:p.Asn161Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1188A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*525A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1031A>G
  hgvsp: ENSP00000357209.4:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1031A>G
  hgvsp: ENSP00000432973.1:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1031A>G
  hgvsp: ENSP00000357190.3:p.Asn344Ser
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.531A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn344Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

6-128505714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505714
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505714
    reference: chr 6
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1025C>T
  hgvsp: ENSP00000357196.5:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1025C>T
  hgvsp: ENSP00000357193.3:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.525C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1025C>T
  hgvsp: ENSP00000357210.3:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1025C>T
  hgvsp: ENSP00000357190.3:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*519C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.475C>T
  hgvsp: ENSP00000434058.1:p.Ala159Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1025C>T
  hgvsp: ENSP00000432973.1:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1025C>T
  hgvsp: ENSP00000357198.3:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1025C>T
  hgvsp: ENSP00000357209.4:p.Ala342Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1266C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1182C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala342Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-128505730-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505730
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505730
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1009T>A
  hgvsp: ENSP00000357196.5:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*503T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1166T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1009T>A
  hgvsp: ENSP00000357190.3:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.509T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1009T>A
  hgvsp: ENSP00000357198.3:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1009T>A
  hgvsp: ENSP00000357209.4:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1009T>A
  hgvsp: ENSP00000432973.1:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1250T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1009T>A
  hgvsp: ENSP00000357193.3:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1009T>A
  hgvsp: ENSP00000357210.3:p.Trp337Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.459T>A
  hgvsp: ENSP00000434058.1:p.Trp154Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.512T>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Trp337Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

6-128505731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505731
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505731
    reference: chr 6
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1008C>A
  hgvsp: ENST00000532331.1:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*502C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1249C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1008C>A
  hgvsp: ENST00000368210.3:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1008C>A
  hgvsp: ENST00000368215.3:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.458C>A
  hgvsp: ENST00000490332.2:c.458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1008C>A
  hgvsp: ENST00000368213.5:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1008C>A
  hgvsp: ENST00000368227.3:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.508C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.511C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1008C>A
  hgvsp: ENST00000368207.3:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1165C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1008C>A
  hgvsp: ENST00000368226.4:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser336Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

6-128505735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505735
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505735
    reference: chr 6
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*498G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.1004G>A
  hgvsp: ENSP00000432973.1:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.504G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.1004G>A
  hgvsp: ENSP00000357210.3:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.1004G>A
  hgvsp: ENSP00000357193.3:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.454G>A
  hgvsp: ENSP00000434058.1:p.Gly152Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1161G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.1004G>A
  hgvsp: ENSP00000357190.3:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.507G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.1004G>A
  hgvsp: ENSP00000357198.3:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.1004G>A
  hgvsp: ENSP00000357196.5:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.1004G>A
  hgvsp: ENSP00000357209.4:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1245G>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly335Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-128505740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505740
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505740
    reference: chr 6
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.449A>G
  hgvsp: ENST00000490332.2:c.449A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.999A>G
  hgvsp: ENST00000368210.3:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*493A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.999A>G
  hgvsp: ENST00000368226.4:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.502A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1240A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.999A>G
  hgvsp: ENST00000532331.1:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1156A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.999A>G
  hgvsp: ENST00000368207.3:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.499A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.999A>G
  hgvsp: ENST00000368215.3:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.999A>G
  hgvsp: ENST00000368213.5:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.999A>G
  hgvsp: ENST00000368227.3:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr333Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-128505747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505747
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505747
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.992G>A
  hgvsp: ENSP00000357210.3:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.442G>A
  hgvsp: ENSP00000434058.1:p.Arg148Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1149G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.992G>A
  hgvsp: ENSP00000357209.4:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*486G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.992G>A
  hgvsp: ENSP00000357190.3:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.492G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1233G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.992G>A
  hgvsp: ENSP00000432973.1:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.992G>A
  hgvsp: ENSP00000357196.5:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.992G>A
  hgvsp: ENSP00000357198.3:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.992G>A
  hgvsp: ENSP00000357193.3:p.Arg331Gln
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.495G>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg331Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

6-128505768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505768
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505768
    reference: chr 6
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.474T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.971T>C
  hgvsp: ENSP00000432973.1:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.421T>C
  hgvsp: ENSP00000434058.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*465T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.971T>C
  hgvsp: ENSP00000357209.4:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.971T>C
  hgvsp: ENSP00000357196.5:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.971T>C
  hgvsp: ENSP00000357190.3:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.471T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1212T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.971T>C
  hgvsp: ENSP00000357198.3:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1128T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.971T>C
  hgvsp: ENSP00000357210.3:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.971T>C
  hgvsp: ENSP00000357193.3:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile324Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-128505772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505772
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505772
    reference: chr 6
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.967A>G
  hgvsp: ENSP00000357196.5:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.967A>G
  hgvsp: ENSP00000357209.4:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.417A>G
  hgvsp: ENSP00000434058.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1208A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.967A>G
  hgvsp: ENSP00000357190.3:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1124A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.967A>G
  hgvsp: ENSP00000357210.3:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.967A>G
  hgvsp: ENSP00000357198.3:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.967A>G
  hgvsp: ENSP00000357193.3:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*461A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.467A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.967A>G
  hgvsp: ENSP00000432973.1:p.Ile323Val
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.470A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile323Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

6-128505777-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505777
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505777
    reference: chr 6
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.962G>C
  hgvsp: ENSP00000432973.1:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1119G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.962G>C
  hgvsp: ENSP00000357196.5:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.962G>C
  hgvsp: ENSP00000357210.3:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.962G>C
  hgvsp: ENSP00000357209.4:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.462G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.962G>C
  hgvsp: ENSP00000357190.3:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.962G>C
  hgvsp: ENSP00000357198.3:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*456G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1203G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.465G>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.412G>C
  hgvsp: ENSP00000434058.1:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.962G>C
  hgvsp: ENSP00000357193.3:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 39984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly321Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-128505782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505782
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505782
    reference: chr 6
allele count: 7
allele frequency: 5.769008884273682e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.957C>T
  hgvsp: ENST00000368213.5:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.957C>T
  hgvsp: ENST00000368215.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1114C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.957C>T
  hgvsp: ENST00000368210.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.957C>T
  hgvsp: ENST00000368227.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.957C>T
  hgvsp: ENST00000532331.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.957C>T
  hgvsp: ENST00000368226.4:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.957C>T
  hgvsp: ENST00000368207.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.407C>T
  hgvsp: ENST00000490332.2:c.407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.460C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.457C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1198C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*451C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly319Gly
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

6-128505794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505794
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505794
    reference: chr 6
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.945C>T
  hgvsp: ENST00000368207.3:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.945C>T
  hgvsp: ENST00000368213.5:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.395C>T
  hgvsp: ENST00000490332.2:c.395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1102C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.945C>T
  hgvsp: ENST00000368215.3:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.945C>T
  hgvsp: ENST00000368210.3:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.945C>T
  hgvsp: ENST00000532331.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*439C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.445C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1186C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.945C>T
  hgvsp: ENST00000368227.3:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.448C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.945C>T
  hgvsp: ENST00000368226.4:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn315Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-128505803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505803
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505803
    reference: chr 6
allele count: 102
allele frequency: 8.408903544929925e-4
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.439A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1177A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.936A>G
  hgvsp: ENST00000368213.5:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.936A>G
  hgvsp: ENST00000368215.3:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.936A>G
  hgvsp: ENST00000368207.3:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.386A>G
  hgvsp: ENST00000490332.2:c.386A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.936A>G
  hgvsp: ENST00000368210.3:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.936A>G
  hgvsp: ENST00000368226.4:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.436A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.936A>G
  hgvsp: ENST00000532331.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1093A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.936A>G
  hgvsp: ENST00000368227.3:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*430A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu312Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/6-128505804-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505804
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505804
    reference: chr 6
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.935T>G
  hgvsp: ENSP00000357190.3:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.438T>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.935T>G
  hgvsp: ENSP00000432973.1:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1176T>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.935T>G
  hgvsp: ENSP00000357193.3:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.935T>G
  hgvsp: ENSP00000357198.3:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.935T>G
  hgvsp: ENSP00000357196.5:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.435T>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.935T>G
  hgvsp: ENSP00000357210.3:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.935T>G
  hgvsp: ENSP00000357209.4:p.Leu312Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1092T>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.385T>G
  hgvsp: ENSP00000434058.1:p.Leu129Arg
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*429T>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu312Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-128505806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505806
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505806
    reference: chr 6
allele count: 1818
allele frequency: 1.498911681287514e-2
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.933A>G
  hgvsp: ENST00000368213.5:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1090A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.933A>G
  hgvsp: ENST00000368207.3:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.933A>G
  hgvsp: ENST00000368210.3:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.436A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.933A>G
  hgvsp: ENST00000368215.3:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.933A>G
  hgvsp: ENST00000368227.3:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.933A>G
  hgvsp: ENST00000368226.4:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.383A>G
  hgvsp: ENST00000490332.2:c.383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1174A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.933A>G
  hgvsp: ENST00000532331.1:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*427A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.433A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 39404
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
hgvs: p.Gln311Gln
num of homozygotes: 63
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-128505814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505814
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505814
    reference: chr 6
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.925C>T
  hgvsp: ENST00000368226.4:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.425C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.925C>T
  hgvsp: ENST00000368213.5:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.925C>T
  hgvsp: ENST00000368215.3:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.375C>T
  hgvsp: ENST00000490332.2:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.925C>T
  hgvsp: ENST00000368210.3:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1082C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.925C>T
  hgvsp: ENST00000532331.1:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.925C>T
  hgvsp: ENST00000368227.3:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1166C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*419C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.925C>T
  hgvsp: ENST00000368207.3:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.428C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu309Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-128505827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505827
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505827
    reference: chr 6
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.912G>T
  hgvsp: ENST00000368227.3:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.912G>T
  hgvsp: ENST00000368213.5:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.362G>T
  hgvsp: ENST00000490332.2:c.362G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.912G>T
  hgvsp: ENST00000532331.1:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.912G>T
  hgvsp: ENST00000368226.4:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.912G>T
  hgvsp: ENST00000368207.3:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.415G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1153G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1069G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.912G>T
  hgvsp: ENST00000368210.3:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.412G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*406G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.912G>T
  hgvsp: ENST00000368215.3:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly304Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

6-128505863-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505863
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505863
    reference: chr 6
allele count: 1
allele frequency: 8.303027283747654e-6
allele num: 120438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1117A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.326A>G
  hgvsp: ENST00000490332.2:c.326A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.876A>G
  hgvsp: ENST00000368213.5:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.876A>G
  hgvsp: ENST00000368207.3:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.876A>G
  hgvsp: ENST00000368226.4:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.376A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.876A>G
  hgvsp: ENST00000368210.3:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.379A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.876A>G
  hgvsp: ENST00000368227.3:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*370A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.876A>G
  hgvsp: ENST00000368215.3:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1033A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.876A>G
  hgvsp: ENST00000532331.1:c.876A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro292Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

6-128505866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505866
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505866
    reference: chr 6
allele count: 4
allele frequency: 3.327565553041395e-5
allele num: 120208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*367G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.373G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.873G>A
  hgvsp: ENST00000532331.1:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1114G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.376G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.873G>A
  hgvsp: ENST00000368215.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.873G>A
  hgvsp: ENST00000368213.5:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.323G>A
  hgvsp: ENST00000490332.2:c.323G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.873G>A
  hgvsp: ENST00000368227.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.873G>A
  hgvsp: ENST00000368207.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.873G>A
  hgvsp: ENST00000368226.4:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1030G>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.873G>A
  hgvsp: ENST00000368210.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38528
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro291Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-128505867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505867
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505867
    reference: chr 6
allele count: 2
allele frequency: 1.664585934248856e-5
allele num: 120150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1029C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.872C>T
  hgvsp: ENSP00000357198.3:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.372C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.872C>T
  hgvsp: ENSP00000357190.3:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1113C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*366C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.375C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.872C>T
  hgvsp: ENSP00000357196.5:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.322C>T
  hgvsp: ENSP00000434058.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.872C>T
  hgvsp: ENSP00000357193.3:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.872C>T
  hgvsp: ENSP00000357210.3:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.872C>T
  hgvsp: ENSP00000357209.4:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.872C>T
  hgvsp: ENSP00000432973.1:p.Pro291Leu
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro291Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

6-128505869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505869
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505869
    reference: chr 6
allele count: 3
allele frequency: 2.497710432103905e-5
allele num: 120110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.870A>G
  hgvsp: ENST00000368226.4:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.373A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*364A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.870A>G
  hgvsp: ENST00000368227.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.320A>G
  hgvsp: ENST00000490332.2:c.320A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.870A>G
  hgvsp: ENST00000368215.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.870A>G
  hgvsp: ENST00000368213.5:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1027A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.870A>G
  hgvsp: ENST00000532331.1:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.870A>G
  hgvsp: ENST00000368207.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.370A>G
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.870A>G
  hgvsp: ENST00000368210.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1111A>G
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.870A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

6-128505874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505874
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505874
    reference: chr 6
allele count: 1
allele frequency: 8.364980844193866e-6
allele num: 119546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-4C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.869-4C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-128505882-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505882
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505882
    reference: chr 6
allele count: 1
allele frequency: 8.43198758811427e-6
allele num: 118596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-12C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-12C>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-128505886-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505886
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505886
    reference: chr 6
allele count: 1
allele frequency: 8.50065455040038e-6
allele num: 117638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-16C>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-128505888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505888
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505888
    reference: chr 6
allele count: 1
allele frequency: 8.539709649871904e-6
allele num: 117100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-18C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

6-128505890-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505890
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505890
    reference: chr 6
allele count: 2
allele frequency: 1.717947396450721e-5
allele num: 116418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-20T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-20T>C
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-128505893-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505893
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505893
    reference: chr 6
allele count: 8
allele frequency: 6.925567463684056e-5
allele num: 115514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-23A>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-23A>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33009
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-128505894-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505894
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505894
    reference: chr 6
allele count: 17
allele frequency: 1.476412144792607e-4
allele num: 115144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-24G>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-24G>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32386
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-128505900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505900
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505900
    reference: chr 6
allele count: 1
allele frequency: 8.840482336716291e-6
allele num: 113116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-30C>T
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

6-128505902-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505902
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505902
    reference: chr 6
allele count: 1
allele frequency: 8.892841262783459e-6
allele num: 112450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-32T>A
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

6-128505919-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128505919
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 128505919
    reference: chr 6
allele count: 1
allele frequency: 9.54052816363914e-6
allele num: 104816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524481
  gene symbol: PTPRK
  hgvsc: ENST00000524481.1:n.1110-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000524534
  gene symbol: PTPRK
  hgvsc: ENST00000524534.1:n.1026-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357190
  ensembl transcript: ENST00000368207
  gene symbol: PTPRK
  hgvsc: ENST00000368207.3:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000498284
  gene symbol: PTPRK
  hgvsc: ENST00000498284.1:n.372-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357198
  ensembl transcript: ENST00000368215
  gene symbol: PTPRK
  hgvsc: ENST00000368215.3:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432960
  ensembl transcript: ENST00000531050
  gene symbol: PTPRK
  hgvsc: ENST00000531050.1:c.*363-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357193
  ensembl transcript: ENST00000368210
  gene symbol: PTPRK
  hgvsc: ENST00000368210.3:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357209
  ensembl transcript: ENST00000368226
  gene symbol: PTPRK
  hgvsc: ENST00000368226.4:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000434058
  ensembl transcript: ENST00000490332
  gene symbol: PTPRK
  hgvsc: ENST00000490332.2:c.319-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl transcript: ENST00000368205
  gene symbol: PTPRK
  hgvsc: ENST00000368205.3:n.369-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357210
  ensembl transcript: ENST00000368227
  gene symbol: PTPRK
  hgvsc: ENST00000368227.3:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000357196
  ensembl transcript: ENST00000368213
  gene symbol: PTPRK
  hgvsc: ENST00000368213.5:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152894
  ensembl protein: ENSP00000432973
  ensembl transcript: ENST00000532331
  gene symbol: PTPRK
  hgvsc: ENST00000532331.1:c.869-49T>C
  variant of: http://identifiers.org/hgnc/9674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6216
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011736139214893e-4
allele num: 9884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.83e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 1.67808e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.132e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.244e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
all individuals: 4647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6217
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.301672548718736e-4
allele num: 13034
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.54e-1

FS
type: SiteQuality
SIO_000300: 3.082e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 1.655642e6

GenotypeQuality
all individuals: 4912
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 271
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GenotypeQuality
all individuals: 4608
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.188212927756654e-4
allele num: 8416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11950
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 1.565e0

DP
type: SiteQuality
SIO_000300: 9.50546e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.277e0

QD
type: SiteQuality
SIO_000300: 1.481e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1532
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 293
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.198178768272226e-4
allele num: 8346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.256965817226804e-4
allele num: 48738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 1.127e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 9.61753e5

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1956
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12200
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.03804347826087e-3
allele num: 5888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.024107e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 25119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 728
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 153
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5090
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variant carriers: 0

GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 977
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GenotypeQuality
all individuals: 213
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3009
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GenotypeQuality
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GenotypeQuality
all individuals: 608
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GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.96664568911265e-5
allele num: 50848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.016e0

DP
type: SiteQuality
SIO_000300: 1.118256e6

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 838
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 236
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4599
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GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.137397634212921e-3
allele num: 8792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.138999e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.783e1

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
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variant carriers: 0

GenotypeQuality
all individuals: 535
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GenotypeQuality
all individuals: 9471
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GenotypeQuality
all individuals: 475
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 3760
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 1.241079e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1337
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GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.815409193232155e-5
allele num: 55084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.450957632037145e-4
allele num: 13784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 2.056e0

DP
type: SiteQuality
SIO_000300: 1.251474e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 437
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 3561
bin: 6.75e1
variant carriers: 29

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 789
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GenotypeQuality
all individuals: 2081
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 1181
bin: 3.75e1
variant carriers: 16

GenotypeQuality
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bin: 5.25e1
variant carriers: 25

GenotypeQuality
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variant carriers: 3679

GenotypeQuality
all individuals: 567
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variant carriers: 14

GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 453
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GenotypeQuality
all individuals: 1779
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
all individuals: 848
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variant carriers: 22

GenotypeQuality
all individuals: 264
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variant carriers: 23

South Asian
type: Population
allele count: 166
allele frequency: 1.191330558346491e-2
allele num: 13934
num of homozygotes: 1

Other
type: Population
allele count: 38
allele frequency: 4.834605597964377e-2
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 1987
allele frequency: 2.067207657095297e-1
allele num: 9612
num of homozygotes: 197

Latino
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allele count: 129
allele frequency: 1.3182096873084e-2
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 877
allele frequency: 1.574732457085398e-2
allele num: 55692
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 593
allele frequency: 9.893226559893227e-2
allele num: 5994
num of homozygotes: 35

East Asian
type: Population
allele count: 348
allele frequency: 4.98567335243553e-2
allele num: 6980
num of homozygotes: 17

QD
type: SiteQuality
SIO_000300: 1.628e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.359999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.304927e6

FS
type: SiteQuality
SIO_000300: 8.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.949270326615705e-5
allele num: 14390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.318808e6

MQRankSum
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SIO_000300: 1.04e0

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -9.159e-1

ReadPosRankSum
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SIO_000300: -1.129e0

QD
type: SiteQuality
SIO_000300: 7.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 2.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.951e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1082
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GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.987281399046105e-4
allele num: 10064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

InbreedingCoeff
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SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 3.032e0

DP
type: SiteQuality
SIO_000300: 1.407866e6

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

QD
type: SiteQuality
SIO_000300: 1.568e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 610
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.219886016035032e-5
allele num: 62114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.415136e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 102
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563477173233271e-5
allele num: 63960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.292e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.453e1

InbreedingCoeff
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SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.450958e6

BaseQRankSum
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SIO_000300: -4.967e0

ReadPosRankSum
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SIO_000300: -1.532e0

ClippingRankSum
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SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528864970645792e-5
allele num: 65408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.564e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -3.559e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.477375e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 4
allele frequency: 4.781257470714798e-4
allele num: 8366
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.508771929824561e-4
allele num: 11400
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.288e1

FS
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.496227e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 102
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.398e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.49654e6

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

BaseQRankSum
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SIO_000300: -1.994e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.513148009015778e-5
allele num: 66550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.505233e6

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeDepth
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.71383757406762e-4
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.678e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

QD
type: SiteQuality
SIO_000300: 1.481e1

DP
type: SiteQuality
SIO_000300: 1.50608e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

GenotypeDepth
all individuals: 103
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1150
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003995313767311e-5
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -1.636e-1

QD
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SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
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SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.505801e6

FS
type: SiteQuality
SIO_000300: 4.019e0

BaseQRankSum
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SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ClippingRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.254e0

ReadPosRankSum
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SIO_000300: 1.09e0

BaseQRankSum
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SIO_000300: -4.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.384e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -5.11e-2

BaseQRankSum
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SIO_000300: -4.59e0

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.506469e6

QD
type: SiteQuality
SIO_000300: 1.713e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
bin: 3.75e1
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GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.506616e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 2.304e0

InbreedingCoeff
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SIO_000300: 2.5e-3

VQSLOD
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SIO_000300: 1.69e0

BaseQRankSum
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SIO_000300: 2.18e0

ClippingRankSum
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SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

QD
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SIO_000300: 1.336e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 3.15e-1

BaseQRankSum
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SIO_000300: 4.77e0

ReadPosRankSum
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SIO_000300: 6.21e-1

VQSLOD
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QD
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SIO_000300: 1.53e1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 2.0e-3

ClippingRankSum
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SIO_000300: -1.271e0

DP
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SIO_000300: 1.506762e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.083e0

BaseQRankSum
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SIO_000300: -5.336e0

VQSLOD
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SIO_000300: 6.32e-1

MQ
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SIO_000300: 5.927e1

InbreedingCoeff
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SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.436e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
SIO_000300: 1.506906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.906e0

MQRankSum
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SIO_000300: -2.87e-1

QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
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SIO_000300: 1.507101e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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South Asian
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allele num: 16510
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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DP
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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European (Finnish)
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African
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Other
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East Asian
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MQ
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MQRankSum
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DP
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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African
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11532
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -4.0e-4

VQSLOD
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MQ
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BaseQRankSum
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FS
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SIO_000300: 1.161e0

MQRankSum
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SIO_000300: -6.62e-1

DP
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: 2.62e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 120

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 133

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 117
allele frequency: 1.124351335767826e-2
allele num: 10406
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 13
allele frequency: 1.125931058375195e-3
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

South Asian
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allele num: 16510
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MQ
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SIO_000300: 5.978e1

ClippingRankSum
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FS
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SIO_000300: 6.42e-1

MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -4.0e-4

BaseQRankSum
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SIO_000300: 4.82e0

ReadPosRankSum
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SIO_000300: 7.5e-1

DP
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SIO_000300: 1.525176e6

QD
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SIO_000300: 1.36e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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MQRankSum
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SIO_000300: 1.22e0

ReadPosRankSum
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SIO_000300: 1.14e0

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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SIO_000300: 1.394e0

MQ
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DP
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SIO_000300: 1.509405e6

BaseQRankSum
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SIO_000300: -1.543e0

VQSLOD
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SIO_000300: 6.29e-1

ClippingRankSum
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SIO_000300: 2.16e-1

QD
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SIO_000300: 1.274e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele num: 16510
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African
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VQSLOD
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SIO_000300: -1.174e-1

QD
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ClippingRankSum
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SIO_000300: -2.681e0

FS
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: -1.6e-1

BaseQRankSum
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SIO_000300: 6.68e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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allele num: 16510
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European (Finnish)
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Other
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East Asian
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African
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Latino
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BaseQRankSum
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SIO_000300: -2.53e0

FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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MQ
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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DP
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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DP
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East Asian
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African
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ReadPosRankSum
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FS
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MQRankSum
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DP
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
type: SiteQuality
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MQ
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QD
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BaseQRankSum
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SIO_000300: 7.86e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 9.51e-1

VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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SIO_000300: 1.27e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.992e1

QD
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

South Asian
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allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 1

European (Non-Finnish)
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allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 3.52e-1

MQ
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SIO_000300: 5.939e1

QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
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SIO_000300: 1.292e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.89e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
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SIO_000300: 1.509224e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
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SIO_000300: 6.830000000000001e-1

FS
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SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.508457e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.266e0

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 90
allele frequency: 1.349042180052163e-3
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 5.98e1

ClippingRankSum
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SIO_000300: -7.7e-2

ReadPosRankSum
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SIO_000300: 4.03e-1

FS
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QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
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African
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East Asian
type: Population
allele count: 0
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MQ
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SIO_000300: 5.936e1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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SIO_000300: 2.172e0

ClippingRankSum
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SIO_000300: 1.57e-1

ReadPosRankSum
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MQRankSum
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SIO_000300: -1.21e0

GenotypeDepth
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variant carriers: 1357

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 992
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variant carriers: 0

South Asian
type: Population
allele count: 68
allele frequency: 4.119214926096438e-3
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 540
allele frequency: 8.166969147005444e-2
allele num: 6612
num of homozygotes: 28

Other
type: Population
allele count: 24
allele frequency: 2.643171806167401e-2
allele num: 908
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European (Non-Finnish)
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allele count: 341
allele frequency: 5.111677409683706e-3
allele num: 66710
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East Asian
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allele count: 341
allele frequency: 3.96327289632729e-2
allele num: 8604
num of homozygotes: 16

African
type: Population
allele count: 482
allele frequency: 4.631943109744378e-2
allele num: 10406
num of homozygotes: 15

Latino
type: Population
allele count: 22
allele frequency: 1.906412478336222e-3
allele num: 11540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e0

DP
type: SiteQuality
SIO_000300: 1.660425e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.91e-2

QD
type: SiteQuality
SIO_000300: 1.683e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.303e0

DP
type: SiteQuality
SIO_000300: 1.502133e6

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e0

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeDepth
all individuals: 131
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.417e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.044e0

FS
type: SiteQuality
SIO_000300: 1.132e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.296e0

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.500971e6

GenotypeDepth
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
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variant carriers: 0

GenotypeDepth
all individuals: 28
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.016e0

DP
type: SiteQuality
SIO_000300: 1.484781e6

VQSLOD
type: SiteQuality
SIO_000300: -5.592e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.798e1

QD
type: SiteQuality
SIO_000300: 7.72e0

GenotypeDepth
all individuals: 19
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variant carriers: 0

GenotypeDepth
all individuals: 510
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variant carriers: 0

GenotypeDepth
all individuals: 12606
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variant carriers: 0

GenotypeDepth
all individuals: 98
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variant carriers: 0

GenotypeDepth
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 5382
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variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
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GenotypeQuality
all individuals: 1192
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48894
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 1011
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16370808678501e-5
allele num: 16224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743983257760725e-4
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.482094e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
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SIO_000300: 3.38e0

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

GenotypeDepth
all individuals: 5020
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 74
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variant carriers: 0

GenotypeDepth
all individuals: 495
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GenotypeDepth
all individuals: 320
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 286
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 1017
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744287458573173e-4
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

BaseQRankSum
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QD
type: SiteQuality
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MQ
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SIO_000300: 5.97e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 1.478895e6

GenotypeDepth
all individuals: 74
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 65
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 105
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66146
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.513703443429375e-4
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.477245e6

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.31e1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 1.1239e1

VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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SIO_000300: 6.575e0

MQRankSum
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InbreedingCoeff
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SIO_000300: -3.0e-4

VQSLOD
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SIO_000300: -2.024e0

BaseQRankSum
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SIO_000300: -4.256e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65048
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.016e0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.409e0

ReadPosRankSum
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

DP
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SIO_000300: 1.423316e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187648456057007e-4
allele num: 8420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.410212e6

MQRankSum
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MQ
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SIO_000300: 5.068e1

ReadPosRankSum
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SIO_000300: -7.42e-1

InbreedingCoeff
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SIO_000300: 2.1e-3

ClippingRankSum
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SIO_000300: 2.4e-2

QD
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FS
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SIO_000300: 8.218e0

VQSLOD
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SIO_000300: -2.065e0

BaseQRankSum
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SIO_000300: -1.737e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.337613697164259e-4
allele num: 14952
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64502
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.5e0

MQRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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SIO_000300: 2.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.092520913971782e-4
allele num: 64072
num of homozygotes: 0

South Asian
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allele frequency: 6.782419967444384e-5
allele num: 14744
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -9.52e-1

ClippingRankSum
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SIO_000300: -1.91e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 3
allele frequency: 3.128258602711158e-4
allele num: 9590
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.838074398249453e-5
allele num: 14624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 2.033410498654821e-4
allele num: 63932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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Other
type: Population
allele count: 0
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.225790634959549e-4
allele num: 8158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62950
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 2.014e0

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.285641e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8773
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595252528475258e-5
allele num: 62686
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.321e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.251103e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.541e0

FS
type: SiteQuality
SIO_000300: 3.118e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1889
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6402
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7562
bin: 2.25e1
variant carriers: 0