6-33144020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144020
    reference: chr 6
allele count: 1
allele frequency: 1.090060825394057e-5
allele num: 91738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2214+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1956+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1893+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2073+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1971+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2151+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2136+16C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+766C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2034+16C>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

6-33144021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144021
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144021
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 91950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2034+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1893+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2151+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+765C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2073+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2136+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2214+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1971+15C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1956+15C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11332
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

6-33144025-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144025
    reference: chr 6
allele count: 1
allele frequency: 1.092299290005461e-5
allele num: 91550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2073+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2151+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2214+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+761T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2034+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2136+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1971+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1956+11T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1893+11T>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

6-33144029-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144029
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144029
    reference: chr 6
allele count: 1
allele frequency: 1.0991426687184e-5
allele num: 90980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1893+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2214+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2151+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2034+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2136+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1971+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+757A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2073+7A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1956+7A>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17075
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1956+7A>C
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-33144038-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144038
    reference: chr 6
allele count: 1
allele frequency: 1.105607641960021e-5
allele num: 90448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+748A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1969A>G
  hgvsp: ENSP00000363844.1:p.Lys657Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1891A>G
  hgvsp: ENSP00000355123.1:p.Lys631Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2212A>G
  hgvsp: ENSP00000339915.2:p.Lys738Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2071A>G
  hgvsp: ENSP00000363845.1:p.Lys691Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2134A>G
  hgvsp: ENSP00000363846.1:p.Lys712Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1954A>G
  hgvsp: ENSP00000363840.4:p.Lys652Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2149A>G
  hgvsp: ENSP00000350079.1:p.Lys717Glu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2032A>G
  hgvsp: ENSP00000378623.1:p.Lys678Glu
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys652Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-33144045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144045
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144045
    reference: chr 6
allele count: 1
allele frequency: 1.119971328733984e-5
allele num: 89288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1947G>A
  hgvsp: ENST00000374708.4:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1962G>A
  hgvsp: ENST00000374712.1:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1884G>A
  hgvsp: ENST00000361917.1:c.1884G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2064G>A
  hgvsp: ENST00000374713.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2025G>A
  hgvsp: ENST00000395197.1:c.2025G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+741G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2142G>A
  hgvsp: ENST00000357486.1:c.2142G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2205G>A
  hgvsp: ENST00000341947.2:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2127G>A
  hgvsp: ENST00000374714.1:c.2127G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys649Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-33144056-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144056
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144056
    reference: chr 6
allele count: 1
allele frequency: 1.130071194485253e-5
allele num: 88490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2116A>C
  hgvsp: ENSP00000363846.1:p.Lys706Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1951A>C
  hgvsp: ENSP00000363844.1:p.Lys651Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1873A>C
  hgvsp: ENSP00000355123.1:p.Lys625Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+730A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2194A>C
  hgvsp: ENSP00000339915.2:p.Lys732Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2053A>C
  hgvsp: ENSP00000363845.1:p.Lys685Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1936A>C
  hgvsp: ENSP00000363840.4:p.Lys646Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2131A>C
  hgvsp: ENSP00000350079.1:p.Lys711Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2014A>C
  hgvsp: ENSP00000378623.1:p.Lys672Gln
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys646Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

6-33144063-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144063
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144063
    reference: chr 6
allele count: 16
allele frequency: 1.832508704416346e-4
allele num: 87312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2007G>C
  hgvsp: ENST00000395197.1:c.2007G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2124G>C
  hgvsp: ENST00000357486.1:c.2124G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2187G>C
  hgvsp: ENST00000341947.2:c.2187G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2046G>C
  hgvsp: ENST00000374713.1:c.2046G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1944G>C
  hgvsp: ENST00000374712.1:c.1944G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1929G>C
  hgvsp: ENST00000374708.4:c.1929G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2109G>C
  hgvsp: ENST00000374714.1:c.2109G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+723G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1866G>C
  hgvsp: ENST00000361917.1:c.1866G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18197
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.75e1
  variant carriers: 2
hgvs: p.Arg643Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-33144064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144064
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144064
    reference: chr 6
allele count: 104
allele frequency: 1.19788067265607e-3
allele num: 86820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2186G>A
  hgvsp: ENSP00000339915.2:p.Arg729Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2045G>A
  hgvsp: ENSP00000363845.1:p.Arg682Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2108G>A
  hgvsp: ENSP00000363846.1:p.Arg703Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1928G>A
  hgvsp: ENSP00000363840.4:p.Arg643Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1865G>A
  hgvsp: ENSP00000355123.1:p.Arg622Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1943G>A
  hgvsp: ENSP00000363844.1:p.Arg648Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2123G>A
  hgvsp: ENSP00000350079.1:p.Arg708Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2006G>A
  hgvsp: ENSP00000378623.1:p.Arg669Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+722G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18255
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20964
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Arg643Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-33144068-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144068
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144068
    reference: chr 6
allele count: 18
allele frequency: 2.071012725222634e-4
allele num: 86914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2041A>T
  hgvsp: ENSP00000363845.1:p.Ile681Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2119A>T
  hgvsp: ENSP00000350079.1:p.Ile707Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+718A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1924A>T
  hgvsp: ENSP00000363840.4:p.Ile642Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2104A>T
  hgvsp: ENSP00000363846.1:p.Ile702Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2182A>T
  hgvsp: ENSP00000339915.2:p.Ile728Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1939A>T
  hgvsp: ENSP00000363844.1:p.Ile647Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.2002A>T
  hgvsp: ENSP00000378623.1:p.Ile668Phe
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1861A>T
  hgvsp: ENSP00000355123.1:p.Ile621Phe
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18401
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile642Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-33144071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144071
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144071
    reference: chr 6
allele count: 1
allele frequency: 1.160281252175527e-5
allele num: 86186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2101G>A
  hgvsp: ENSP00000363846.1:p.Gly701Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2179G>A
  hgvsp: ENSP00000339915.2:p.Gly727Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+715G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2038G>A
  hgvsp: ENSP00000363845.1:p.Gly680Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1921G>A
  hgvsp: ENSP00000363840.4:p.Gly641Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1858G>A
  hgvsp: ENSP00000355123.1:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1936G>A
  hgvsp: ENSP00000363844.1:p.Gly646Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2116G>A
  hgvsp: ENSP00000350079.1:p.Gly706Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1999G>A
  hgvsp: ENSP00000378623.1:p.Gly667Arg
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8338
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7583
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly641Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-33144072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144072
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144072
    reference: chr 6
allele count: 11
allele frequency: 1.28035011755942e-4
allele num: 85914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1998C>T
  hgvsp: ENST00000395197.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+714C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2100C>T
  hgvsp: ENST00000374714.1:c.2100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1935C>T
  hgvsp: ENST00000374712.1:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2115C>T
  hgvsp: ENST00000357486.1:c.2115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2037C>T
  hgvsp: ENST00000374713.1:c.2037C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2178C>T
  hgvsp: ENST00000341947.2:c.2178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1857C>T
  hgvsp: ENST00000361917.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1920C>T
  hgvsp: ENST00000374708.4:c.1920C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18450
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp640Asp
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/6-33144074-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144074
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144074
    reference: chr 6
allele count: 2
allele frequency: 2.3227724612097e-5
allele num: 86104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1918G>T
  hgvsp: ENSP00000363840.4:p.Asp640Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1933G>T
  hgvsp: ENSP00000363844.1:p.Asp645Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2113G>T
  hgvsp: ENSP00000350079.1:p.Asp705Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1855G>T
  hgvsp: ENSP00000355123.1:p.Asp619Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2035G>T
  hgvsp: ENSP00000363845.1:p.Asp679Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+712G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2098G>T
  hgvsp: ENSP00000363846.1:p.Asp700Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1996G>T
  hgvsp: ENSP00000378623.1:p.Asp666Tyr
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2176G>T
  hgvsp: ENSP00000339915.2:p.Asp726Tyr
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp640Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-33144088-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144088
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144088
    reference: chr 6
allele count: 1
allele frequency: 1.186830924066557e-5
allele num: 84258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+698A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-8A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-8A>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21620
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1912-8A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-33144105-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144105
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144105
    reference: chr 6
allele count: 4
allele frequency: 4.849072614862408e-5
allele num: 82490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-25A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+681A>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19165
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

6-33144119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144119
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144119
    reference: chr 6
allele count: 478
allele frequency: 5.857843137254902e-3
allele num: 81600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+667C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 1.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 9.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 7.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 1.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 8
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-33144125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144125
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144125
    reference: chr 6
allele count: 1
allele frequency: 1.225670441731627e-5
allele num: 81588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+661C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-45C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-45C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-33144127-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144127
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144127
    reference: chr 6
allele count: 1
allele frequency: 1.22946788629881e-5
allele num: 81336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+659A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-47A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-47A>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-33144128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144128
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144128
    reference: chr 6
allele count: 1
allele frequency: 1.22393028493097e-5
allele num: 81704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-48C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+658C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

6-33144130-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144130
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144130
    reference: chr 6
allele count: 3
allele frequency: 3.648481015737115e-5
allele num: 82226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+656C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1849-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2170-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1927-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1912-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2029-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2092-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2107-50C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1990-50C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17977
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-33144161-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144161
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144161
    reference: chr 6
allele count: 18
allele frequency: 1.739298482945212e-4
allele num: 103490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+625A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+49A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+49A>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

6-33144165-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144165
    reference: chr 6
allele count: 1
allele frequency: 9.662022454540184e-6
allele num: 103498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+621A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+45A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+45A>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-33144179-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144179
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144179
    reference: chr 6
allele count: 1
allele frequency: 9.547633141744162e-6
allele num: 104738
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+607G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+31G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+31G>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

6-33144185-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144185
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144185
    reference: chr 6
allele count: 2
allele frequency: 1.89523159730119e-5
allele num: 105528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+601C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+25C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+25C>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-33144189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144189
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144189
    reference: chr 6
allele count: 4
allele frequency: 3.769104649190585e-5
allele num: 106126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+597G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+21G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

6-33144194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144194
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144194
    reference: chr 6
allele count: 3
allele frequency: 2.799761087053905e-5
allele num: 107152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+592G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+16G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+16G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25454
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

6-33144201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144201
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144201
    reference: chr 6
allele count: 2
allele frequency: 1.844099802681321e-5
allele num: 108454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1848+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1989+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2106+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2028+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1926+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2169+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2091+9C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+585C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1911+9C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-33144220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144220
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144220
    reference: chr 6
allele count: 1
allele frequency: 8.938307799567386e-6
allele num: 111878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2018G>A
  hgvsp: ENSP00000363845.1:p.Arg673Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1916G>A
  hgvsp: ENSP00000363844.1:p.Arg639Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2081G>A
  hgvsp: ENSP00000363846.1:p.Arg694Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1979G>A
  hgvsp: ENSP00000378623.1:p.Arg660Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1838G>A
  hgvsp: ENSP00000355123.1:p.Arg613Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1901G>A
  hgvsp: ENSP00000363840.4:p.Arg634Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+566G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2159G>A
  hgvsp: ENSP00000339915.2:p.Arg720Gln
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2096G>A
  hgvsp: ENSP00000350079.1:p.Arg699Gln
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg634Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-33144221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144221
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144221
    reference: chr 6
allele count: 1
allele frequency: 8.915516565029779e-6
allele num: 112164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+565C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2080C>T
  hgvsp: ENSP00000363846.1:p.Arg694Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2095C>T
  hgvsp: ENSP00000350079.1:p.Arg699Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1978C>T
  hgvsp: ENSP00000378623.1:p.Arg660Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1837C>T
  hgvsp: ENSP00000355123.1:p.Arg613Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.2017C>T
  hgvsp: ENSP00000363845.1:p.Arg673Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1900C>T
  hgvsp: ENSP00000363840.4:p.Arg634Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1915C>T
  hgvsp: ENSP00000363844.1:p.Arg639Ter
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2158C>T
  hgvsp: ENSP00000339915.2:p.Arg720Ter
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg634Ter
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-33144243-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144243
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144243
    reference: chr 6
allele count: 55255
allele frequency: 4.788211234163504e-1
allele num: 115398
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1956A>T
  hgvsp: ENST00000395197.1:c.1956A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1815A>T
  hgvsp: ENST00000361917.1:c.1815A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1995A>T
  hgvsp: ENST00000374713.1:c.1995A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1878A>T
  hgvsp: ENST00000374708.4:c.1878A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2058A>T
  hgvsp: ENST00000374714.1:c.2058A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1893A>T
  hgvsp: ENST00000374712.1:c.1893A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+543A>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2073A>T
  hgvsp: ENST00000357486.1:c.2073A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2136A>T
  hgvsp: ENST00000341947.2:c.2136A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 964
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 2.75e1
  variant carriers: 4825
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 4.75e1
  variant carriers: 3648
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 6.75e1
  variant carriers: 1215
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 1621
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 3.25e1
  variant carriers: 5474
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 654
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.25e1
  variant carriers: 4669
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 5.25e1
  variant carriers: 2831
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 1020
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.75e1
  variant carriers: 5400
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 5.75e1
  variant carriers: 2089
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.5e0
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.25e1
  variant carriers: 701
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.75e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 787
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 2.25e1
  variant carriers: 3219
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 6.25e1
  variant carriers: 1645
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 187
hgvs: p.Gly626Gly
num of homozygotes: 13755
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-33144256-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144256
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144256
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 114550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2123C>G
  hgvsp: ENSP00000339915.2:p.Ser708Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2045C>G
  hgvsp: ENSP00000363846.1:p.Ser682Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1880C>G
  hgvsp: ENSP00000363844.1:p.Ser627Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1982C>G
  hgvsp: ENSP00000363845.1:p.Ser661Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2060C>G
  hgvsp: ENSP00000350079.1:p.Ser687Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+530C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1865C>G
  hgvsp: ENSP00000363840.4:p.Ser622Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1802C>G
  hgvsp: ENSP00000355123.1:p.Ser601Cys
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1943C>G
  hgvsp: ENSP00000378623.1:p.Ser648Cys
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19346
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser622Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-33144271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144271
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144271
    reference: chr 6
allele count: 2
allele frequency: 1.751098814506103e-5
allele num: 114214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+515T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-8T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-8T>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18978
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1858-8T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-33144272-TAAAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144272
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144267
    reference: chr 6
allele count: 1
allele frequency: 8.757334267448989e-6
allele num: 114190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+509_272+513delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-14_1936-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-14_1975-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-14_2038-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-14_1795-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-14_1858-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-14_1873-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-14_2116-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-14_2053-10delCTTTT
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: TAAAAG
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

6-33144281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144281
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144281
    reference: chr 6
allele count: 1
allele frequency: 8.781173164734809e-6
allele num: 113880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-18C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+505C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

6-33144283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144283
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144283
    reference: chr 6
allele count: 1
allele frequency: 8.786882941145458e-6
allele num: 113806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+503G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-20G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-20G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

6-33144297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144297
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144297
    reference: chr 6
allele count: 340
allele frequency: 3.001571410915126e-3
allele num: 113274
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+489G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-34G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14130
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 5
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

6-33144314-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144314
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144314
    reference: chr 6
allele count: 1
allele frequency: 8.892524943532467e-6
allele num: 112454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1795-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1873-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1975-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2038-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1936-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+472C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2053-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1858-51C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2116-51C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

6-33144457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144457
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144457
    reference: chr 6
allele count: 1
allele frequency: 9.395140833161089e-6
allele num: 106438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+329C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+41C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+41C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-33144462-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144462
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144462
    reference: chr 6
allele count: 1
allele frequency: 9.362068642687288e-6
allele num: 106814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+36C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+324C>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-33144466-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144466
    reference: chr 6
allele count: 6096
allele frequency: 5.688583639723036e-2
allele num: 107162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+320G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+32G>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+32G>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.75e1
  variant carriers: 746
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 9.75e1
  variant carriers: 550
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 12451
  bin: 1.25e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 7.5e0
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 1.75e1
  variant carriers: 1023
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 16554
  bin: 2.25e1
  variant carriers: 1009
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 9.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 9577
  bin: 9.75e1
  variant carriers: 5338
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 7
num of homozygotes: 431
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-33144479-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144479
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144479
    reference: chr 6
allele count: 1
allele frequency: 9.182399177257034e-6
allele num: 108904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+19T>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+307T>G
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-33144482-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144483
    reference: chr 6
allele count: 1
allele frequency: 9.139932364500503e-6
allele num: 109410
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+303_272+304insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+15_1857+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+15_2037+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+15_2052+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+15_1974+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+15_1872+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+15_1794+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+15_1935+16insA
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+15_2115+16insA
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28299
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-33144483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144483
    reference: chr 6
allele count: 1
allele frequency: 9.132753707898006e-6
allele num: 109496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+303G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+15G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+15G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-33144487-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144487
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144487
    reference: chr 6
allele count: 2
allele frequency: 1.81626648261833e-5
allele num: 110116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+299C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+11C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+11C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

6-33144491-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144491
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144491
    reference: chr 6
allele count: 81
allele frequency: 7.318527620665354e-4
allele num: 110678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2037+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1935+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2052+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1857+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1794+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2115+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+295T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1872+7T>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1974+7T>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26040
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10467
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5198
  bin: 9.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1857+7T>C
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-33144519-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144519
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144519
    reference: chr 6
allele count: 4
allele frequency: 3.500297525289649e-5
allele num: 114276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2031C>A
  hgvsp: ENST00000357486.1:c.2031C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1773C>A
  hgvsp: ENST00000361917.1:c.1773C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1836C>A
  hgvsp: ENST00000374708.4:c.1836C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1953C>A
  hgvsp: ENST00000374713.1:c.1953C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1914C>A
  hgvsp: ENST00000395197.1:c.1914C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2016C>A
  hgvsp: ENST00000374714.1:c.2016C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1851C>A
  hgvsp: ENST00000374712.1:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2094C>A
  hgvsp: ENST00000341947.2:c.2094C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+267C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12571
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro612Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-33144528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144528
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144528
    reference: chr 6
allele count: 8
allele frequency: 6.996431819771916e-5
allele num: 114344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1905G>A
  hgvsp: ENST00000395197.1:c.1905G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1944G>A
  hgvsp: ENST00000374713.1:c.1944G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2022G>A
  hgvsp: ENST00000357486.1:c.2022G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1842G>A
  hgvsp: ENST00000374712.1:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1827G>A
  hgvsp: ENST00000374708.4:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.2007G>A
  hgvsp: ENST00000374714.1:c.2007G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+258G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1764G>A
  hgvsp: ENST00000361917.1:c.1764G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2085G>A
  hgvsp: ENST00000341947.2:c.2085G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29388
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys609Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-33144537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144537
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144537
    reference: chr 6
allele count: 2
allele frequency: 1.753493836469165e-5
allele num: 114058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1896C>T
  hgvsp: ENST00000395197.1:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1833C>T
  hgvsp: ENST00000374712.1:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1935C>T
  hgvsp: ENST00000374713.1:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2013C>T
  hgvsp: ENST00000357486.1:c.2013C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2076C>T
  hgvsp: ENST00000341947.2:c.2076C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+249C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1818C>T
  hgvsp: ENST00000374708.4:c.1818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1998C>T
  hgvsp: ENST00000374714.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1755C>T
  hgvsp: ENST00000361917.1:c.1755C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His606His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-33144541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144541
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144541
    reference: chr 6
allele count: 1
allele frequency: 8.778706369829343e-6
allele num: 113912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+245G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1829G>A
  hgvsp: ENSP00000363844.1:p.Gly610Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1994G>A
  hgvsp: ENSP00000363846.1:p.Gly665Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1931G>A
  hgvsp: ENSP00000363845.1:p.Gly644Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1751G>A
  hgvsp: ENSP00000355123.1:p.Gly584Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2072G>A
  hgvsp: ENSP00000339915.2:p.Gly691Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1892G>A
  hgvsp: ENSP00000378623.1:p.Gly631Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2009G>A
  hgvsp: ENSP00000350079.1:p.Gly670Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1814G>A
  hgvsp: ENSP00000363840.4:p.Gly605Asp
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly605Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

6-33144549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144549
    reference: chr 6
allele count: 1
allele frequency: 8.827527762574813e-6
allele num: 113282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+237C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-7C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-7C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 25573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1813-7C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-33144554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144554
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144554
    reference: chr 6
allele count: 1
allele frequency: 8.849714154232818e-6
allele num: 112998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+232C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-12C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

6-33144555-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144555
    reference: chr 6
allele count: 1
allele frequency: 8.859593167481749e-6
allele num: 112872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+231C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-13C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-13C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23880
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-33144566-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144566
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144566
    reference: chr 6
allele count: 2
allele frequency: 1.783803068141277e-5
allele num: 112120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+220A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-24A>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-24A>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-33144569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144569
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144569
    reference: chr 6
allele count: 7
allele frequency: 6.264206325058615e-5
allele num: 111746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+217G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-27G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-27G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15555
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5134
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22002
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-33144576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144576
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144576
    reference: chr 6
allele count: 2
allele frequency: 1.807795212958276e-5
allele num: 110632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-34G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+210G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-34G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-33144585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144585
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144585
    reference: chr 6
allele count: 28
allele frequency: 2.580359775877322e-4
allele num: 108512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1891-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1813-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+201G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1930-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1750-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2071-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1993-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1828-43G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2008-43G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-33144730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144730
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144730
    reference: chr 6
allele count: 64
allele frequency: 7.681966583445362e-4
allele num: 83312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+56C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+39C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+39C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16176
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19894
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

6-33144736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144736
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144736
    reference: chr 6
allele count: 1
allele frequency: 1.18962645729241e-5
allele num: 84060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+33C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+50C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

6-33144748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144748
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144748
    reference: chr 6
allele count: 5
allele frequency: 5.884014309922802e-5
allele num: 84976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+38G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+21G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+21G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-33144749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144749
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144749
    reference: chr 6
allele count: 1
allele frequency: 1.171646162858817e-5
allele num: 85350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+37C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+20C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+20C>T
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

6-33144757-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144757
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144757
    reference: chr 6
allele count: 2
allele frequency: 2.298005331372369e-5
allele num: 87032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+29C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+12C>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+12C>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

6-33144760-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144760
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144760
    reference: chr 6
allele count: 1
allele frequency: 1.1436936730866e-5
allele num: 87436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+26G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+9G>C
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+9G>C
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

6-33144761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144761
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144761
    reference: chr 6
allele count: 1
allele frequency: 1.141448269564423e-5
allele num: 87608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1992+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2007+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1929+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1812+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1749+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2070+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+25G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1827+8G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1890+8G>A
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1812+8G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-33144770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144770
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144770
    reference: chr 6
allele count: 6
allele frequency: 6.692096633875393e-5
allele num: 89658
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1811C>T
  hgvsp: ENSP00000363840.4:p.Pro604Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1928C>T
  hgvsp: ENSP00000363845.1:p.Pro643Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1748C>T
  hgvsp: ENSP00000355123.1:p.Pro583Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1991C>T
  hgvsp: ENSP00000363846.1:p.Pro664Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1826C>T
  hgvsp: ENSP00000363844.1:p.Pro609Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2006C>T
  hgvsp: ENSP00000350079.1:p.Pro669Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1889C>T
  hgvsp: ENSP00000378623.1:p.Pro630Leu
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+16C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2069C>T
  hgvsp: ENSP00000339915.2:p.Pro690Leu
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro604Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-33144774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144774
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144774
    reference: chr 6
allele count: 1
allele frequency: 1.095554240890466e-5
allele num: 91278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+12C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1822C>T
  hgvsp: ENSP00000363844.1:p.Pro608Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1744C>T
  hgvsp: ENSP00000355123.1:p.Pro582Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1807C>T
  hgvsp: ENSP00000363840.4:p.Pro603Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1924C>T
  hgvsp: ENSP00000363845.1:p.Pro642Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1987C>T
  hgvsp: ENSP00000363846.1:p.Pro663Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2065C>T
  hgvsp: ENSP00000339915.2:p.Pro689Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2002C>T
  hgvsp: ENSP00000350079.1:p.Pro668Ser
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1885C>T
  hgvsp: ENSP00000378623.1:p.Pro629Ser
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro603Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-33144775-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144775
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144775
    reference: chr 6
allele count: 22
allele frequency: 2.402061405424291e-4
allele num: 91588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1821A>G
  hgvsp: ENST00000374712.1:c.1821A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1806A>G
  hgvsp: ENST00000374708.4:c.1806A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1923A>G
  hgvsp: ENST00000374713.1:c.1923A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.2001A>G
  hgvsp: ENST00000357486.1:c.2001A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+11A>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1986A>G
  hgvsp: ENST00000374714.1:c.1986A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1743A>G
  hgvsp: ENST00000361917.1:c.1743A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1884A>G
  hgvsp: ENST00000395197.1:c.1884A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2064A>G
  hgvsp: ENST00000341947.2:c.2064A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20790
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly602Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

6-33144777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144777
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144777
    reference: chr 6
allele count: 1
allele frequency: 1.085917817739553e-5
allele num: 92088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1984G>A
  hgvsp: ENSP00000363846.1:p.Gly662Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1804G>A
  hgvsp: ENSP00000363840.4:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1819G>A
  hgvsp: ENSP00000363844.1:p.Gly607Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1741G>A
  hgvsp: ENSP00000355123.1:p.Gly581Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+9G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1921G>A
  hgvsp: ENSP00000363845.1:p.Gly641Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1882G>A
  hgvsp: ENSP00000378623.1:p.Gly628Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.1999G>A
  hgvsp: ENSP00000350079.1:p.Gly667Arg
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2062G>A
  hgvsp: ENSP00000339915.2:p.Gly688Arg
  variant of: http://identifiers.org/hgnc/2187
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly602Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

6-33144778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144778
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144778
    reference: chr 6
allele count: 1
allele frequency: 1.079400716722076e-5
allele num: 92644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2061C>T
  hgvsp: ENST00000341947.2:c.2061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1740C>T
  hgvsp: ENST00000361917.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1803C>T
  hgvsp: ENST00000374708.4:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+8C>T
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1920C>T
  hgvsp: ENST00000374713.1:c.1920C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1881C>T
  hgvsp: ENST00000395197.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1983C>T
  hgvsp: ENST00000374714.1:c.1983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1818C>T
  hgvsp: ENST00000374712.1:c.1818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.1998C>T
  hgvsp: ENST00000357486.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.25e1
  variant carriers: 0
hgvs: n.272+8C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-33144784-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144784
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144784
    reference: chr 6
allele count: 1
allele frequency: 1.058089091101471e-5
allele num: 94510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+2C>G
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1734C>G
  hgvsp: ENST00000361917.1:c.1734C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1875C>G
  hgvsp: ENST00000395197.1:c.1875C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1812C>G
  hgvsp: ENST00000374712.1:c.1812C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2055C>G
  hgvsp: ENST00000341947.2:c.2055C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1797C>G
  hgvsp: ENST00000374708.4:c.1797C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1914C>G
  hgvsp: ENST00000374713.1:c.1914C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.1992C>G
  hgvsp: ENST00000357486.1:c.1992C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1977C>G
  hgvsp: ENST00000374714.1:c.1977C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2187
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22680
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20621
  bin: 6.25e1
  variant carriers: 0
hgvs: n.272+2C>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

6-33144785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33144785
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 33144785
    reference: chr 6
allele count: 1
allele frequency: 1.055364417333305e-5
allele num: 94754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000339915
  ensembl transcript: ENST00000341947
  gene symbol: COL11A2
  hgvsc: ENST00000341947.2:c.2054G>A
  hgvsp: ENSP00000339915.2:p.Gly685Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363840
  ensembl transcript: ENST00000374708
  gene symbol: COL11A2
  hgvsc: ENST00000374708.4:c.1796G>A
  hgvsp: ENSP00000363840.4:p.Gly599Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000355123
  ensembl transcript: ENST00000361917
  gene symbol: COL11A2
  hgvsc: ENST00000361917.1:c.1733G>A
  hgvsp: ENSP00000355123.1:p.Gly578Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363846
  ensembl transcript: ENST00000374714
  gene symbol: COL11A2
  hgvsc: ENST00000374714.1:c.1976G>A
  hgvsp: ENSP00000363846.1:p.Gly659Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363845
  ensembl transcript: ENST00000374713
  gene symbol: COL11A2
  hgvsc: ENST00000374713.1:c.1913G>A
  hgvsp: ENSP00000363845.1:p.Gly638Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000363844
  ensembl transcript: ENST00000374712
  gene symbol: COL11A2
  hgvsc: ENST00000374712.1:c.1811G>A
  hgvsp: ENSP00000363844.1:p.Gly604Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204248
  ensembl transcript: ENST00000477772
  gene symbol: COL11A2
  hgvsc: ENST00000477772.1:n.272+1G>A
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000378623
  ensembl transcript: ENST00000395197
  gene symbol: COL11A2
  hgvsc: ENST00000395197.1:c.1874G>A
  hgvsp: ENSP00000378623.1:p.Gly625Asp
  variant of: http://identifiers.org/hgnc/2187
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204248
  ensembl protein: ENSP00000350079
  ensembl transcript: ENST00000357486
  gene symbol: COL11A2
  hgvsc: ENST00000357486.1:c.1991G>A
  hgvsp: ENSP00000350079.1:p.Gly664Asp
  variant of: http://identifiers.org/hgnc/2187
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
hgvs: n.272+1G>A
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.261034047919294e-4
allele num: 7930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.359e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

QD
type: SiteQuality
SIO_000300: 1.334e1

FS
type: SiteQuality
SIO_000300: 5.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
type: SiteQuality
SIO_000300: 1.677317e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 547
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 315
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18967
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14084
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

QD
type: SiteQuality
SIO_000300: 6.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.677475e6

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 682
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7592
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14032
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.489425081918379e-4
allele num: 6714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.513e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.673681e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 8.141e0

VQSLOD
type: SiteQuality
SIO_000300: -7.821e-1

QD
type: SiteQuality
SIO_000300: 7.4e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

GenotypeQuality
all individuals: 10797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4950
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.017593414575095e-5
allele num: 49564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.768e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

FS
type: SiteQuality
SIO_000300: 2.276e0

DP
type: SiteQuality
SIO_000300: 1.668185e6

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4904
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20058
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.285677552069941e-4
allele num: 7778
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 3.969e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 2.184e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

VQSLOD
type: SiteQuality
SIO_000300: -1.95e0

DP
type: SiteQuality
SIO_000300: 1.661554e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.064e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.651405e6

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.024e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 745
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.07546386617409e-5
allele num: 48182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.638638e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 4.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.151e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7601
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 614
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 906
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5336
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 854
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2316
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.492537313432836e-3
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.382131324004305e-4
allele num: 7432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.55247084952804e-4
allele num: 7204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.474118687613191e-4
allele num: 47486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

QD
type: SiteQuality
SIO_000300: 1.032e1

DP
type: SiteQuality
SIO_000300: 1.62667e6

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 5103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1068
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5350
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7656
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 2322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1034
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 5.75e1
variant carriers: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.541307028360049e-4
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 98
allele frequency: 1.367569076193134e-2
allele num: 7166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.791632708503124e-4
allele num: 7362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.624872e6

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

GenotypeQuality
all individuals: 5219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21421
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5392
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7593
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 795
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.268123599780192e-4
allele num: 47314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13498
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.515151515151515e-3
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.398601398601399e-4
allele num: 7150
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.357588922074396e-3
allele num: 7366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.328e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.617592e6

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5301
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.376273052573631e-4
allele num: 7266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 1.611746e6

VQSLOD
type: SiteQuality
SIO_000300: -8.124e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 1.807e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5207
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2090
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7591
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.490979573579842e-4
allele num: 13414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.411631846414455e-4
allele num: 7084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.712548700603673e-4
allele num: 46714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

DP
type: SiteQuality
SIO_000300: 1.612448e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.02e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 612
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5310
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.270401844813597e-5
allele num: 46834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.168e0

DP
type: SiteQuality
SIO_000300: 1.607449e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.288e0

FS
type: SiteQuality
SIO_000300: 1.421e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 5.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 5651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.181405697831683e-5
allele num: 45842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6972
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.756e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: -1.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.580571e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 5.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 20577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7586
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1081
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.931761343336905e-5
allele num: 44784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 1.102e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 8.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.559366e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
all individuals: 6285
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 444
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19157
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5646
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1380
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1324
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3707
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4463
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 7808
bin: 9.75e1
variant carriers: 465

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 725
bin: 6.75e1
variant carriers: 3

Latino
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 435
allele frequency: 3.30697886574426e-2
allele num: 13154
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.716899112479623e-4
allele num: 44168
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.502502502502502e-3
allele num: 5994
num of homozygotes: 1

African
type: Population
allele count: 10
allele frequency: 1.464128843338214e-3
allele num: 6830
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 7.836990595611285e-3
allele num: 638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.336e1

DP
type: SiteQuality
SIO_000300: 1.561758e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

GenotypeQuality
all individuals: 18874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5583
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7587
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.25998915205207e-5
allele num: 44248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 4.558e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.803e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.128e0

DP
type: SiteQuality
SIO_000300: 1.558883e6

QD
type: SiteQuality
SIO_000300: 1.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44066
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.532801961986511e-4
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2465e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: -2.454e0

VQSLOD
type: SiteQuality
SIO_000300: -2.113e0

DP
type: SiteQuality
SIO_000300: 1.561457e6

QD
type: SiteQuality
SIO_000300: 1.458e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 2614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7586
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4098
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.618467164406521e-5
allele num: 13126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4360
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.595e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.563044e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.773e1

GenotypeQuality
all individuals: 5505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7588
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 4.534461910519952e-4
allele num: 6616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.566791e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

FS
type: SiteQuality
SIO_000300: 3.002e0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
all individuals: 511
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3058
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5949
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5976
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1109
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.029018316526034e-4
allele num: 9718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.921229586935639e-3
allele num: 8328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.772672481032404e-5
allele num: 56412
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.28e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 1.32944e6

GenotypeQuality
all individuals: 1114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6003
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5959
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6402
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.365374112506827e-4
allele num: 7324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.337871e6

QD
type: SiteQuality
SIO_000300: 6.9e0

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -4.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.518e0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.750822886756776e-5
allele num: 57116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.354e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.466e0

DP
type: SiteQuality
SIO_000300: 1.415419e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.192e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.323e-1

QD
type: SiteQuality
SIO_000300: 1.862e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 1115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 988
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.474514436607484e-5
allele num: 57562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 2.312e1

VQSLOD
type: SiteQuality
SIO_000300: -2.298e0

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

DP
type: SiteQuality
SIO_000300: 1.453111e6

FS
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeQuality
all individuals: 6229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5993
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 23749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.714757190004715e-4
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.118e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.474639e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

QD
type: SiteQuality
SIO_000300: 1.033e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

GenotypeQuality
all individuals: 628
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6010
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15152
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.926829268292683e-4
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.506265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.549e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.689e0

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6022
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5041
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59280
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.313197636244255e-4
allele num: 15230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

VQSLOD
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 1.538113e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 3.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 2632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6089
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.430868167202572e-5
allele num: 15550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61090
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.609919e6

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

QD
type: SiteQuality
SIO_000300: 5.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632972990626735e-5
allele num: 61238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.076e0

QD
type: SiteQuality
SIO_000300: 4.65e0

FS
type: SiteQuality
SIO_000300: 5.474e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

DP
type: SiteQuality
SIO_000300: 1.615622e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 111

GenotypeQuality
all individuals: 655
bin: 2.25e1
variant carriers: 159

GenotypeQuality
all individuals: 1331
bin: 7.75e1
variant carriers: 710

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 316

GenotypeQuality
all individuals: 1271
bin: 8.25e1
variant carriers: 819

GenotypeQuality
all individuals: 1078
bin: 9.25e1
variant carriers: 784

GenotypeQuality
all individuals: 658
bin: 8.75e1
variant carriers: 453

GenotypeQuality
all individuals: 337
bin: 2.5e0
variant carriers: 39

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 125

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 319

GenotypeQuality
all individuals: 284
bin: 3.25e1
variant carriers: 172

GenotypeQuality
all individuals: 591
bin: 5.25e1
variant carriers: 429

GenotypeQuality
all individuals: 958
bin: 7.25e1
variant carriers: 406

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 139

GenotypeQuality
all individuals: 36657
bin: 9.75e1
variant carriers: 35595

GenotypeQuality
all individuals: 2230
bin: 6.75e1
variant carriers: 592

GenotypeQuality
all individuals: 545
bin: 7.5e0
variant carriers: 132

GenotypeQuality
all individuals: 10965
bin: 6.25e1
variant carriers: 517

European (Non-Finnish)
type: Population
allele count: 25422
allele frequency: 4.052864840735899e-1
allele num: 62726
num of homozygotes: 5093

South Asian
type: Population
allele count: 8169
allele frequency: 5.022749631087063e-1
allele num: 16264
num of homozygotes: 2054

African
type: Population
allele count: 4757
allele frequency: 5.178532549531897e-1
allele num: 9186
num of homozygotes: 1203

European (Finnish)
type: Population
allele count: 3251
allele frequency: 4.964874770922419e-1
allele num: 6548
num of homozygotes: 830

East Asian
type: Population
allele count: 6225
allele frequency: 7.359895956490896e-1
allele num: 8458
num of homozygotes: 2279

Other
type: Population
allele count: 430
allele frequency: 4.942528735632184e-1
allele num: 870
num of homozygotes: 111

Latino
type: Population
allele count: 7001
allele frequency: 6.17045654856337e-1
allele num: 11346
num of homozygotes: 2185

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.759e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.63e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.41e0

DP
type: SiteQuality
SIO_000300: 2.250985e6

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.923e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.351e-1

DP
type: SiteQuality
SIO_000300: 1.640508e6

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.488e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 3146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.213057867172188e-5
allele num: 62246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.833e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.625115e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.85e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31880
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.606683804627249e-5
allele num: 62240
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.772e0

QD
type: SiteQuality
SIO_000300: 1.185e1

DP
type: SiteQuality
SIO_000300: 1.623983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1231
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611291933872579e-5
allele num: 62062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.908e0

QD
type: SiteQuality
SIO_000300: 1.423e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 4.548e0

VQSLOD
type: SiteQuality
SIO_000300: -6.936e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

DP
type: SiteQuality
SIO_000300: 1.603013e6

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62026
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

QD
type: SiteQuality
SIO_000300: 1.342e1

DP
type: SiteQuality
SIO_000300: 1.596077e6

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 1.6406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 1205
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3938
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1065
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3022
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 21733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 9.75e1
variant carriers: 317

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1846
bin: 8.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.210408644888833e-5
allele num: 16102
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61794
num of homozygotes: 0

East Asian
type: Population
allele count: 337
allele frequency: 4.13091443981368e-2
allele num: 8158
num of homozygotes: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.919015340706386e-5
allele num: 11212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

DP
type: SiteQuality
SIO_000300: 1.513563e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 236
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4597
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.043226623259179e-5
allele num: 11058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61452
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.687e1

DP
type: SiteQuality
SIO_000300: 1.464918e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 597
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5896
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.689588754097253e-5
allele num: 59186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.645e0

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.456372e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

VQSLOD
type: SiteQuality
SIO_000300: -9.403e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

GenotypeQuality
all individuals: 1263
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2270
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.684522606293377e-5
allele num: 59364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.902e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.008e0

FS
type: SiteQuality
SIO_000300: 1.294e0

QD
type: SiteQuality
SIO_000300: 2.717e1

DP
type: SiteQuality
SIO_000300: 1.473197e6

GenotypeQuality
all individuals: 973
bin: 5.25e1
variant carriers: 35

GenotypeQuality
all individuals: 1781
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 7659
bin: 2.25e1
variant carriers: 20

GenotypeQuality
all individuals: 3109
bin: 6.75e1
variant carriers: 34

GenotypeQuality
all individuals: 4213
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 3127
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 396
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 284
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 43

GenotypeQuality
all individuals: 1868
bin: 4.75e1
variant carriers: 31

GenotypeQuality
all individuals: 17820
bin: 6.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 43

GenotypeQuality
all individuals: 1092
bin: 7.25e1
variant carriers: 29

European (Non-Finnish)
type: Population
allele count: 2643
allele frequency: 4.438585295401874e-2
allele num: 59546
num of homozygotes: 47

African
type: Population
allele count: 2884
allele frequency: 2.939258051365675e-1
allele num: 9812
num of homozygotes: 374

South Asian
type: Population
allele count: 17
allele frequency: 1.209964412811388e-3
allele num: 14050
num of homozygotes: 0

Other
type: Population
allele count: 24
allele frequency: 2.992518703241895e-2
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 290
allele frequency: 4.831722759080306e-2
allele num: 6002
num of homozygotes: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

Latino
type: Population
allele count: 238
allele frequency: 2.505790692777427e-2
allele num: 9498
num of homozygotes: 4

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.51e-2

QD
type: SiteQuality
SIO_000300: 1.563e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.527285e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 7572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25713
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651200422707308e-5
allele num: 60562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

DP
type: SiteQuality
SIO_000300: 1.556919e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60800
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.019514249613927e-5
allele num: 14246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 1.571072e6

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.773e1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

FS
type: SiteQuality
SIO_000300: 1.585e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.167e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.017543859649122e-5
allele num: 14250
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.942e0

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

DP
type: SiteQuality
SIO_000300: 1.575781e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.773e1

FS
type: SiteQuality
SIO_000300: 1.585e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 4036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2016
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.266906239790918e-5
allele num: 61220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.591632e6

FS
type: SiteQuality
SIO_000300: 2.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1303
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30778
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

African
type: Population
allele count: 77
allele frequency: 7.771497779572063e-3
allele num: 9908
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61522
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.980099502487562e-4
allele num: 10050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

FS
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.605578e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.127e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4974
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.29822075263738e-5
allele num: 63510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14774
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

FS
type: SiteQuality
SIO_000300: 1.2354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

QD
type: SiteQuality
SIO_000300: 7.43e0

DP
type: SiteQuality
SIO_000300: 1.684843e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 5231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14760
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.007208650380457e-4
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.147326346268845e-5
allele num: 63546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.756e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

DP
type: SiteQuality
SIO_000300: 1.685423e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152783908190933e-5
allele num: 63436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14736
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.676769e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.672223e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.344e0

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.014e0

QD
type: SiteQuality
SIO_000300: 4.47e0

DP
type: SiteQuality
SIO_000300: 1.646199e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 644
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01010101010101e-4
allele num: 9900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.161e0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.633419e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592153865749586e-5
allele num: 62808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.625842e6

FS
type: SiteQuality
SIO_000300: 4.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

QD
type: SiteQuality
SIO_000300: 1.329e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.030869212022746e-4
allele num: 9848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.563493e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.857737682165163e-4
allele num: 14410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

QD
type: SiteQuality
SIO_000300: 1.225e1

DP
type: SiteQuality
SIO_000300: 1.536552e6

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6938
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.237817710862878e-5
allele num: 61770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 5.612e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 1.4738e6

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5151
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648098094798602e-5
allele num: 60676
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 1.942725572024752e-3
allele num: 13898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

DP
type: SiteQuality
SIO_000300: 1.430711e6

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.417e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 1221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17051
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5733
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2326
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 1.262736218758164e-3
allele num: 45932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.735148514851485e-5
allele num: 12928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.26321905868681e-4
allele num: 6884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

DP
type: SiteQuality
SIO_000300: 9.07895e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

QD
type: SiteQuality
SIO_000300: 1.246e1

GenotypeQuality
all individuals: 17912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 728
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.159360829194558e-5
allele num: 46310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13014
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

DP
type: SiteQuality
SIO_000300: 9.33731e5

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.356665698518733e-4
allele num: 6886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.273321652920815e-5
allele num: 46802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.73774e5

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

FS
type: SiteQuality
SIO_000300: 7.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 977
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6108
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.57346258709482e-5
allele num: 13204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.547e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

QD
type: SiteQuality
SIO_000300: 2.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 9.81445e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeQuality
all individuals: 848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1961
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.171185450905147e-5
allele num: 47948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

QD
type: SiteQuality
SIO_000300: 8.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 1.008517e6

GenotypeQuality
all individuals: 586
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4676
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.076325733981147e-5
allele num: 48162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.621e1

DP
type: SiteQuality
SIO_000300: 1.01632e6

MQRankSum
type: SiteQuality
SIO_000300: -1.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.634e0

FS
type: SiteQuality
SIO_000300: 2.077e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 16619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.07288255047469e-5
allele num: 48242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

FS
type: SiteQuality
SIO_000300: 1.228e0

QD
type: SiteQuality
SIO_000300: 1.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 1.01967e6

GenotypeQuality
all individuals: 4191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15504
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.349698662354843e-5
allele num: 13606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.627569528415961e-4
allele num: 8270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.048582995951417e-5
allele num: 49400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 7.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

DP
type: SiteQuality
SIO_000300: 1.062801e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
all individuals: 2299
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14963
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.986807597552253e-5
allele num: 50332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.076447e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 3.719e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.744e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 6.94e0

GenotypeQuality
all individuals: 1084
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3970
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.169320972981539e-4
allele num: 50484
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.629045876723895e-4
allele num: 7106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.250580046403712e-5
allele num: 13792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

DP
type: SiteQuality
SIO_000300: 1.08129e6

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

GenotypeQuality
all individuals: 335
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.968426439903941e-5
allele num: 50802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.294e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.655e0

DP
type: SiteQuality
SIO_000300: 1.092972e6

GenotypeQuality
all individuals: 2793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3980
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 20703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.201497911565606e-5
allele num: 13886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 9.24e0

VQSLOD
type: SiteQuality
SIO_000300: -3.666e0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 2.4249e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.101766e6

GenotypeQuality
all individuals: 1102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.916883913510198e-5
allele num: 52168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

DP
type: SiteQuality
SIO_000300: 1.124303e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 1.1031e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1