6-71162240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162240
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162240
    reference: chr 6
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.123C>T
  hgvsp: ENST00000515323.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.123C>T
  hgvsp: ENST00000505868.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22922C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000425101
  ensembl transcript: ENST00000507085
  gene symbol: FAM135A
  hgvsc: ENST00000507085.1:c.123C>T
  hgvsp: ENST00000507085.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.123C>T
  hgvsp: ENST00000505769.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.123C>T
  hgvsp: ENST00000361499.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.123C>T
  hgvsp: ENST00000418814.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.123C>T
  hgvsp: ENST00000194672.7:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.80C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22922C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44097
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro41Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

6-71162245-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162245
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162245
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.128G>T
  hgvsp: ENSP00000354913.3:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22917G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.128G>T
  hgvsp: ENSP00000423785.1:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.128G>T
  hgvsp: ENSP00000423307.1:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.128G>T
  hgvsp: ENSP00000194672.7:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.85G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.128G>T
  hgvsp: ENSP00000410768.2:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22917G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.128G>T
  hgvsp: ENSP00000422406.1:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000425101
  ensembl transcript: ENST00000507085
  gene symbol: FAM135A
  hgvsc: ENST00000507085.1:c.128G>T
  hgvsp: ENSP00000425101.1:p.Arg43Ile
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg43Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

6-71162253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162253
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162253
    reference: chr 6
allele count: 2
allele frequency: 1.661654010401954e-5
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.136G>A
  hgvsp: ENSP00000410768.2:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.93G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.136G>A
  hgvsp: ENSP00000423785.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.136G>A
  hgvsp: ENSP00000354913.3:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.136G>A
  hgvsp: ENSP00000194672.7:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.136G>A
  hgvsp: ENSP00000423307.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000425101
  ensembl transcript: ENST00000507085
  gene symbol: FAM135A
  hgvsc: ENST00000507085.1:c.136G>A
  hgvsp: ENSP00000425101.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.136G>A
  hgvsp: ENSP00000422406.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22909G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22909G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala46Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

6-71162265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162265
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162265
    reference: chr 6
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22897C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.148C>T
  hgvsp: ENSP00000423307.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.148C>T
  hgvsp: ENSP00000422406.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.105C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.148C>T
  hgvsp: ENSP00000423785.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.148C>T
  hgvsp: ENSP00000354913.3:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22897C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000425101
  ensembl transcript: ENST00000507085
  gene symbol: FAM135A
  hgvsc: ENST00000507085.1:c.148C>T
  hgvsp: ENSP00000425101.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.148C>T
  hgvsp: ENSP00000410768.2:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.148C>T
  hgvsp: ENSP00000194672.7:p.His50Tyr
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His50Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

6-71162270-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162270
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162270
    reference: chr 6
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22892A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.153A>G
  hgvsp: ENST00000361499.3:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.153A>G
  hgvsp: ENST00000515323.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.153A>G
  hgvsp: ENST00000505769.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.153A>G
  hgvsp: ENST00000194672.7:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.153A>G
  hgvsp: ENST00000418814.2:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.153A>G
  hgvsp: ENST00000505868.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22892A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.110A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala51Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

6-71162271-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162271
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162271
    reference: chr 6
allele count: 2
allele frequency: 1.664530519167069e-5
allele num: 120154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.154A>T
  hgvsp: ENSP00000354913.3:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.111A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.154A>T
  hgvsp: ENSP00000422406.1:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.154A>T
  hgvsp: ENSP00000410768.2:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.154A>T
  hgvsp: ENSP00000194672.7:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.154A>T
  hgvsp: ENSP00000423307.1:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.154A>T
  hgvsp: ENSP00000423785.1:p.Thr52Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22891A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22891A>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr52Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-71162273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162273
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162273
    reference: chr 6
allele count: 3
allele frequency: 2.498001598721023e-5
allele num: 120096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.113A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.156A>C
  hgvsp: ENST00000505868.1:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.156A>C
  hgvsp: ENST00000418814.2:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.156A>C
  hgvsp: ENST00000361499.3:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.156A>C
  hgvsp: ENST00000515323.1:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.156A>C
  hgvsp: ENST00000194672.7:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22889A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22889A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.156A>C
  hgvsp: ENST00000505769.1:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4964
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: c.156A>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/6-71162287-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162287
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162287
    reference: chr 6
allele count: 230
allele frequency: 1.924106545308526e-3
allele num: 119536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22875A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+13A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22875A>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 33471
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 4
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-71162301-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162301
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162301
    reference: chr 6
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22861A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22861A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+27A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

6-71162302-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162302
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162302
    reference: chr 6
allele count: 3
allele frequency: 2.517876926175849e-5
allele num: 119148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22860A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22860A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+28A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+28A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11359
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-71162320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162320
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162320
    reference: chr 6
allele count: 1
allele frequency: 8.553002959339024e-6
allele num: 116918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22842C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22842C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+46C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+46C>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

6-71162320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162320
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162320
    reference: chr 6
allele count: 1
allele frequency: 8.553002959339024e-6
allele num: 116918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22842C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+46C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22842C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-71162322-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71162322
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71162322
    reference: chr 6
allele count: 1
allele frequency: 8.661008141347653e-6
allele num: 115460
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-22840A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.114+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-22840A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.157+48A>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

6-71185069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185069
    reference: chr 6
allele count: 1
allele frequency: 3.477051460361614e-5
allele num: 28760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-93A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-93A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-44A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-44A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5343
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6546
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

6-71185082-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185082
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185082
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 29646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-80A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-80A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-31A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-31A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-71185084-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185084
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185084
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 29808
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-78C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-29C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-78C>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22630
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-71185088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185088
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185088
    reference: chr 6
allele count: 1
allele frequency: 3.272893892779996e-5
allele num: 30554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-74C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-74C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-25C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24958
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

6-71185090-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185090
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185090
    reference: chr 6
allele count: 65
allele frequency: 2.084268582056051e-3
allele num: 31186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-72A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-23A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-72A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26204
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

6-71185091-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185091
    reference: chr 6
allele count: 1
allele frequency: 3.191014104282341e-5
allele num: 31338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-71T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-22T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-71T>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-71185095-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185095
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185095
    reference: chr 6
allele count: 2
allele frequency: 6.155361319709468e-5
allele num: 32492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-67A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-67A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.115-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.158-18A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-71185128-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185128
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185128
    reference: chr 6
allele count: 1
allele frequency: 1.873150264114187e-5
allele num: 53386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.173T>G
  hgvsp: ENSP00000423785.1:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.173T>G
  hgvsp: ENSP00000354913.3:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.173T>G
  hgvsp: ENSP00000423307.1:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.130T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.173T>G
  hgvsp: ENSP00000422406.1:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.173T>G
  hgvsp: ENSP00000194672.7:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.173T>G
  hgvsp: ENSP00000410768.2:p.Phe58Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-34T>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe58Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-71185133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185133
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185133
    reference: chr 6
allele count: 1
allele frequency: 1.702359470225733e-5
allele num: 58742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-29G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-29G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.178G>A
  hgvsp: ENSP00000423785.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.178G>A
  hgvsp: ENSP00000354913.3:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.178G>A
  hgvsp: ENSP00000410768.2:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.178G>A
  hgvsp: ENSP00000422406.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.135G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.178G>A
  hgvsp: ENSP00000194672.7:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.178G>A
  hgvsp: ENSP00000423307.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala60Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

6-71185149-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185149
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185149
    reference: chr 6
allele count: 27
allele frequency: 3.574359924806058e-4
allele num: 75538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-13C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.194C>G
  hgvsp: ENSP00000423785.1:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-13C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.194C>G
  hgvsp: ENSP00000423307.1:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.194C>G
  hgvsp: ENSP00000422406.1:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.194C>G
  hgvsp: ENSP00000354913.3:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.194C>G
  hgvsp: ENSP00000410768.2:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.151C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.194C>G
  hgvsp: ENSP00000194672.7:p.Ser65Cys
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20096
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21535
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20011
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser65Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

6-71185159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185159
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185159
    reference: chr 6
allele count: 1
allele frequency: 1.184525360687972e-5
allele num: 84422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.204C>T
  hgvsp: ENST00000505868.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.78-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.204C>T
  hgvsp: ENST00000505769.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.204C>T
  hgvsp: ENST00000515323.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.204C>T
  hgvsp: ENST00000418814.2:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.204C>T
  hgvsp: ENST00000361499.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.204C>T
  hgvsp: ENST00000194672.7:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.161C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.78-3C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5364
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 0
hgvs: c.78-3C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-71185168-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185168
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185168
    reference: chr 6
allele count: 2
allele frequency: 2.196064652143359e-5
allele num: 91072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.213A>G
  hgvsp: ENST00000515323.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.213A>G
  hgvsp: ENST00000361499.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.170A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.213A>G
  hgvsp: ENST00000418814.2:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.213A>G
  hgvsp: ENST00000505868.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.84A>G
  hgvsp: ENST00000457062.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.213A>G
  hgvsp: ENST00000505769.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.84A>G
  hgvsp: ENST00000370479.3:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.213A>G
  hgvsp: ENST00000194672.7:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr71Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

6-71185188-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185188
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185188
    reference: chr 6
allele count: 1
allele frequency: 9.812964889211626e-6
allele num: 101906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.233A>G
  hgvsp: ENSP00000422406.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.233A>G
  hgvsp: ENSP00000423307.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.233A>G
  hgvsp: ENSP00000354913.3:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.233A>G
  hgvsp: ENSP00000410768.2:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.233A>G
  hgvsp: ENSP00000194672.7:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.233A>G
  hgvsp: ENSP00000423785.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.104A>G
  hgvsp: ENSP00000409201.2:p.Asn35Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.104A>G
  hgvsp: ENSP00000359510.3:p.Asn35Ser
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.190A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn78Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-71185190-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185190
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185190
    reference: chr 6
allele count: 1
allele frequency: 9.706287733193562e-6
allele num: 103026
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.235G>T
  hgvsp: ENSP00000410768.2:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.235G>T
  hgvsp: ENSP00000423307.1:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.192G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.106G>T
  hgvsp: ENSP00000359510.3:p.Glu36Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.106G>T
  hgvsp: ENSP00000409201.2:p.Glu36Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.235G>T
  hgvsp: ENSP00000423785.1:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.235G>T
  hgvsp: ENSP00000194672.7:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.235G>T
  hgvsp: ENSP00000422406.1:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.235G>T
  hgvsp: ENSP00000354913.3:p.Glu79Ter
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu79Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

6-71185198-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185198
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185198
    reference: chr 6
allele count: 1
allele frequency: 9.385617479773995e-6
allele num: 106546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.243T>G
  hgvsp: ENST00000361499.3:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.114T>G
  hgvsp: ENST00000457062.2:c.114T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.243T>G
  hgvsp: ENST00000515323.1:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.200T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.243T>G
  hgvsp: ENST00000505868.1:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.243T>G
  hgvsp: ENST00000418814.2:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.243T>G
  hgvsp: ENST00000505769.1:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.243T>G
  hgvsp: ENST00000194672.7:c.243T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.114T>G
  hgvsp: ENST00000370479.3:c.114T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val81Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-71185215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185215
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185215
    reference: chr 6
allele count: 3
allele frequency: 2.729009369598836e-5
allele num: 109930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.131T>C
  hgvsp: ENSP00000409201.2:p.Met44Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.260T>C
  hgvsp: ENSP00000410768.2:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.260T>C
  hgvsp: ENSP00000423307.1:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.260T>C
  hgvsp: ENSP00000423785.1:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.260T>C
  hgvsp: ENSP00000354913.3:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.260T>C
  hgvsp: ENSP00000194672.7:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.131T>C
  hgvsp: ENSP00000359510.3:p.Met44Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.260T>C
  hgvsp: ENSP00000422406.1:p.Met87Thr
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.217T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38433
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met87Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

6-71185223-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185223
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185223
    reference: chr 6
allele count: 6
allele frequency: 5.416237881167741e-5
allele num: 110778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.139A>G
  hgvsp: ENSP00000359510.3:p.Lys47Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.268A>G
  hgvsp: ENSP00000422406.1:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.268A>G
  hgvsp: ENSP00000423785.1:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.268A>G
  hgvsp: ENSP00000410768.2:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.225A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.268A>G
  hgvsp: ENSP00000194672.7:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.268A>G
  hgvsp: ENSP00000423307.1:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.268A>G
  hgvsp: ENSP00000354913.3:p.Lys90Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.139A>G
  hgvsp: ENSP00000409201.2:p.Lys47Glu
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34717
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys90Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-71185224-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185224
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185224
    reference: chr 6
allele count: 1
allele frequency: 9.02429339782695e-6
allele num: 110812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.226A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.269A>G
  hgvsp: ENSP00000422406.1:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.269A>G
  hgvsp: ENSP00000354913.3:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.269A>G
  hgvsp: ENSP00000194672.7:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.269A>G
  hgvsp: ENSP00000423307.1:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.140A>G
  hgvsp: ENSP00000359510.3:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.269A>G
  hgvsp: ENSP00000423785.1:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.269A>G
  hgvsp: ENSP00000410768.2:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.140A>G
  hgvsp: ENSP00000409201.2:p.Lys47Arg
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys90Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

6-71185243-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185243
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185243
    reference: chr 6
allele count: 8
allele frequency: 7.202535292422933e-5
allele num: 111072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.288T>A
  hgvsp: ENSP00000422406.1:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.288T>A
  hgvsp: ENSP00000354913.3:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.288T>A
  hgvsp: ENSP00000410768.2:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.159T>A
  hgvsp: ENSP00000359510.3:p.Asp53Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.245T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.159T>A
  hgvsp: ENSP00000409201.2:p.Asp53Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.288T>A
  hgvsp: ENSP00000194672.7:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.288T>A
  hgvsp: ENSP00000423785.1:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.288T>A
  hgvsp: ENSP00000423307.1:p.Asp96Glu
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34758
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp96Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-71185247-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185247
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185247
    reference: chr 6
allele count: 20
allele frequency: 1.802061558422836e-4
allele num: 110984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.292A>C
  hgvsp: ENST00000515323.1:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.249A>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.292A>C
  hgvsp: ENST00000505868.1:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.292A>C
  hgvsp: ENST00000361499.3:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.163A>C
  hgvsp: ENST00000457062.2:c.163A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.163A>C
  hgvsp: ENST00000370479.3:c.163A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.292A>C
  hgvsp: ENST00000505769.1:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.292A>C
  hgvsp: ENST00000194672.7:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.292A>C
  hgvsp: ENST00000418814.2:c.292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29508
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5379
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg98Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-71185249-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185249
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185249
    reference: chr 6
allele count: 3
allele frequency: 2.703725734061537e-5
allele num: 110958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.294A>G
  hgvsp: ENST00000194672.7:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.165A>G
  hgvsp: ENST00000457062.2:c.165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.294A>G
  hgvsp: ENST00000515323.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.294A>G
  hgvsp: ENST00000361499.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.294A>G
  hgvsp: ENST00000418814.2:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.294A>G
  hgvsp: ENST00000505769.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.251A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.165A>G
  hgvsp: ENST00000370479.3:c.165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.294A>G
  hgvsp: ENST00000505868.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28815
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg98Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-71185254-T-TAAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185254
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185258
    reference: chr 6
allele count: 2
allele frequency: 1.808416369784979e-5
allele num: 110594
alternate allele: TAAAC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+4_168+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+4_254+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+4_168+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+4_297+7dupAACA
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
hgvs: c.297+4_297+7dupAACA
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

6-71185259-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185259
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185259
    reference: chr 6
allele count: 7
allele frequency: 6.361901299645552e-5
allele num: 110030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+7A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+7A>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 8.25e1
  variant carriers: 0
hgvs: c.297+7A>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

6-71185261-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185261
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185261
    reference: chr 6
allele count: 18
allele frequency: 1.634877384196185e-4
allele num: 110100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+9C>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23402
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

6-71185267-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185267
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185267
    reference: chr 6
allele count: 5
allele frequency: 4.572724612232953e-5
allele num: 109344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+15A>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-71185267-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185267
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185266
    reference: chr 6
allele count: 1
allele frequency: 9.145449224465906e-6
allele num: 109344
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20228
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 842
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.124606387764283e-4
  allele num: 8892
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15624
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6250
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: AT
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-71185267-ATATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185267
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185263
    reference: chr 6
allele count: 1
allele frequency: 9.145449224465906e-6
allele num: 109344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+23_168+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+23_254+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+23_297+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+23_168+26delTTAT
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: ATATT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-71185270-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185270
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185270
    reference: chr 6
allele count: 98
allele frequency: 8.992640716474885e-4
allele num: 108978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+18T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+18T>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20348
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 2
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

6-71185279-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185279
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185279
    reference: chr 6
allele count: 85
allele frequency: 7.873432260693974e-4
allele num: 107958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+27G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+27G>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19693
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5455
  bin: 9.75e1
  variant carriers: 81
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-71185286-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185286
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185286
    reference: chr 6
allele count: 403
allele frequency: 3.741806094594344e-3
allele num: 107702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+34T>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19368
  bin: 2.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7599
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

6-71185292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185292
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185292
    reference: chr 6
allele count: 1
allele frequency: 9.26509283623022e-6
allele num: 107932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+40G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+40G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-71185300-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185300
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185300
    reference: chr 6
allele count: 1
allele frequency: 9.206238146968386e-6
allele num: 108622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.254+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.168+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.168+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.297+48T>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-71185321-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185321
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185321
    reference: chr 6
allele count: 1
allele frequency: 8.610149644400819e-6
allele num: 116142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-45T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-45T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

6-71185322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185322
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185322
    reference: chr 6
allele count: 1
allele frequency: 8.618312189740762e-6
allele num: 116032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-44C>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-44C>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14501
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-71185323-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185323
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185323
    reference: chr 6
allele count: 1
allele frequency: 8.609111884018045e-6
allele num: 116156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-43T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-43T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-71185334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185334
    reference: chr 6
allele count: 3
allele frequency: 2.577496735170802e-5
allele num: 116392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-32A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-32A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-71185351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185351
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185351
    reference: chr 6
allele count: 910
allele frequency: 7.720893926795744e-3
allele num: 117862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-15G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 20398
  bin: 2.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 3.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 22466
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 35
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

6-71185363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185363
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185363
    reference: chr 6
allele count: 6
allele frequency: 5.060728744939271e-5
allele num: 118560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.255-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.169-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.169-3C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.298-3C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
hgvs: c.298-3C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

6-71185385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185385
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185385
    reference: chr 6
allele count: 4
allele frequency: 3.350757271143279e-5
allele num: 119376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.317A>G
  hgvsp: ENSP00000423785.1:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.317A>G
  hgvsp: ENSP00000354913.3:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.188A>G
  hgvsp: ENSP00000359510.3:p.Glu63Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.317A>G
  hgvsp: ENSP00000410768.2:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.317A>G
  hgvsp: ENSP00000194672.7:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.274A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.317A>G
  hgvsp: ENSP00000422406.1:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.188A>G
  hgvsp: ENSP00000409201.2:p.Glu63Gly
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.317A>G
  hgvsp: ENSP00000423307.1:p.Glu106Gly
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7005
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu106Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-71185398-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185398
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185398
    reference: chr 6
allele count: 4
allele frequency: 3.347840642785403e-5
allele num: 119480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.330A>G
  hgvsp: ENST00000515323.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.201A>G
  hgvsp: ENST00000457062.2:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.330A>G
  hgvsp: ENST00000505868.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.330A>G
  hgvsp: ENST00000418814.2:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.330A>G
  hgvsp: ENST00000505769.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.330A>G
  hgvsp: ENST00000194672.7:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.201A>G
  hgvsp: ENST00000370479.3:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.330A>G
  hgvsp: ENST00000361499.3:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.287A>G
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu110Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-71185401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185401
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185401
    reference: chr 6
allele count: 1
allele frequency: 8.370302167908262e-6
allele num: 119470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.204A>G
  hgvsp: ENST00000457062.2:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.333A>G
  hgvsp: ENST00000418814.2:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.333A>G
  hgvsp: ENST00000361499.3:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.333A>G
  hgvsp: ENST00000505769.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.290A>G
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.333A>G
  hgvsp: ENST00000515323.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.204A>G
  hgvsp: ENST00000370479.3:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.333A>G
  hgvsp: ENST00000194672.7:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.333A>G
  hgvsp: ENST00000505868.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu111Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

6-71185404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185404
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185404
    reference: chr 6
allele count: 10
allele frequency: 8.371142995864655e-5
allele num: 119458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.336C>T
  hgvsp: ENST00000361499.3:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.336C>T
  hgvsp: ENST00000505769.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.336C>T
  hgvsp: ENST00000505868.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.207C>T
  hgvsp: ENST00000370479.3:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.336C>T
  hgvsp: ENST00000515323.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.207C>T
  hgvsp: ENST00000457062.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.293C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.336C>T
  hgvsp: ENST00000418814.2:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.336C>T
  hgvsp: ENST00000194672.7:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser112Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

6-71185412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185412
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185412
    reference: chr 6
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.344T>C
  hgvsp: ENSP00000423785.1:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.215T>C
  hgvsp: ENSP00000409201.2:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.344T>C
  hgvsp: ENSP00000423307.1:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.344T>C
  hgvsp: ENSP00000410768.2:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.215T>C
  hgvsp: ENSP00000359510.3:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.344T>C
  hgvsp: ENSP00000194672.7:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.344T>C
  hgvsp: ENSP00000422406.1:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.344T>C
  hgvsp: ENSP00000354913.3:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.301T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu115Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-71185424-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185424
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185424
    reference: chr 6
allele count: 1
allele frequency: 8.407741848694278e-6
allele num: 118938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.227A>T
  hgvsp: ENSP00000409201.2:p.Asp76Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.356A>T
  hgvsp: ENSP00000354913.3:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.356A>T
  hgvsp: ENSP00000410768.2:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.356A>T
  hgvsp: ENSP00000422406.1:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.356A>T
  hgvsp: ENSP00000194672.7:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.227A>T
  hgvsp: ENSP00000359510.3:p.Asp76Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.313A>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.356A>T
  hgvsp: ENSP00000423785.1:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.356A>T
  hgvsp: ENSP00000423307.1:p.Asp119Val
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp119Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

6-71185436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185436
    reference: chr 6
allele count: 3
allele frequency: 2.541166903842244e-5
allele num: 118056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239C>T
  hgvsp: ENSP00000359510.3:p.Ser80Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368C>T
  hgvsp: ENSP00000423307.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368C>T
  hgvsp: ENSP00000423785.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368C>T
  hgvsp: ENSP00000354913.3:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368C>T
  hgvsp: ENSP00000422406.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239C>T
  hgvsp: ENSP00000409201.2:p.Ser80Leu
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368C>T
  hgvsp: ENSP00000194672.7:p.Ser123Phe
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368C>T
  hgvsp: ENSP00000410768.2:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser123Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-71185454-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185454
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185455
    reference: chr 6
allele count: 3
allele frequency: 2.586608266800021e-5
allele num: 115982
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+24dupA
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-71185454-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185454
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185453
    reference: chr 6
allele count: 5
allele frequency: 4.311013778000035e-5
allele num: 115982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+24delA
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: TA
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

6-71185465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185465
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185465
    reference: chr 6
allele count: 1
allele frequency: 8.70852564660803e-6
allele num: 114830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+29T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

6-71185468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185468
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185468
    reference: chr 6
allele count: 3
allele frequency: 2.620728213012789e-5
allele num: 114472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+32G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+32G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4070
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-71185478-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185478
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185476
    reference: chr 6
allele count: 1
allele frequency: 8.923631561100105e-6
allele num: 112062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+44_239+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+44_239+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+44_325+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+44_368+45delGT
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15499
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: CTG
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

6-71185485-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185485
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185485
    reference: chr 6
allele count: 9
allele frequency: 8.230904302019315e-5
allele num: 109344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+49T>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+49T>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15045
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5757
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

6-71185487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185487
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185487
    reference: chr 6
allele count: 1
allele frequency: 9.233269315999409e-6
allele num: 108304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+51G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+51G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4069
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7192
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-71185488-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185488
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71185488
    reference: chr 6
allele count: 2
allele frequency: 1.841722378768624e-5
allele num: 108594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.239+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.325+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.368+52T>C
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.239+52T>C
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-71186813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71186813
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71186813
    reference: chr 6
allele count: 5
allele frequency: 4.572975543726792e-5
allele num: 109338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.369-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.240-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.369-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.369-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.240-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.369-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.369-49G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.369-183G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.326-49G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5661
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

6-71186813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71186813
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71186813
    reference: chr 6
allele count: 2
allele frequency: 1.829190217490717e-5
allele num: 109338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.369-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.369-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.326-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.369-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.240-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.369-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.369-49G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.369-183G>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.240-49G>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

6-71186814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71186814
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71186814
    reference: chr 6
allele count: 1
allele frequency: 9.183073758448429e-6
allele num: 108896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.326-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.240-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.369-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.369-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.369-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.369-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.369-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.240-48C>T
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.369-182C>T
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12223
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-71186815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71186815
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 71186815
    reference: chr 6
allele count: 19
allele frequency: 1.740915171617585e-4
allele num: 109138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000194672
  ensembl transcript: ENST00000194672
  gene symbol: FAM135A
  hgvsc: ENST00000194672.7:c.369-181G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423785
  ensembl transcript: ENST00000505769
  gene symbol: FAM135A
  hgvsc: ENST00000505769.1:c.369-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000359510
  ensembl transcript: ENST00000370479
  gene symbol: FAM135A
  hgvsc: ENST00000370479.3:c.240-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000410768
  ensembl transcript: ENST00000418814
  gene symbol: FAM135A
  hgvsc: ENST00000418814.2:c.369-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl transcript: ENST00000393299
  gene symbol: FAM135A
  hgvsc: ENST00000393299.2:n.326-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000423307
  ensembl transcript: ENST00000505868
  gene symbol: FAM135A
  hgvsc: ENST00000505868.1:c.369-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000409201
  ensembl transcript: ENST00000457062
  gene symbol: FAM135A
  hgvsc: ENST00000457062.2:c.240-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000354913
  ensembl transcript: ENST00000361499
  gene symbol: FAM135A
  hgvsc: ENST00000361499.3:c.369-47G>A
  variant of: http://identifiers.org/hgnc/21084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000082269
  ensembl protein: ENSP00000422406
  ensembl transcript: ENST00000515323
  gene symbol: FAM135A
  hgvsc: ENST00000515323.1:c.369-47G>A
  variant of: http://identifiers.org/hgnc/21084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16493
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4865
  bin: 9.75e1
  variant carriers: 20
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4969
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.331e0

QD
type: SiteQuality
SIO_000300: 1.248e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

DP
type: SiteQuality
SIO_000300: 1.73547e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.446e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 1.735207e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.048e0

VQSLOD
type: SiteQuality
SIO_000300: -1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 6.36e0

FS
type: SiteQuality
SIO_000300: 2.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005620510354363e-5
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.734741e6

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

QD
type: SiteQuality
SIO_000300: 1.033e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.458e0

DP
type: SiteQuality
SIO_000300: 1.733026e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4962
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.89e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

FS
type: SiteQuality
SIO_000300: 8.84e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

DP
type: SiteQuality
SIO_000300: 1.730794e6

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4963
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00960062599693e-5
allele num: 66454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 3.521e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.73039e6

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.829045238385563e-4
allele num: 16402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.482e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.06e1

DP
type: SiteQuality
SIO_000300: 1.728491e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

FS
type: SiteQuality
SIO_000300: 2.564e0

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 40838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
all individuals: 5151
bin: 9.75e1
variant carriers: 224

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 115
allele frequency: 1.186790505675955e-2
allele num: 9690
num of homozygotes: 3

Latino
type: Population
allele count: 27
allele frequency: 2.367175170962651e-3
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.393665158371041e-3
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.08886334764987e-3
allele num: 66124
num of homozygotes: 1

South Asian
type: Population
allele count: 13
allele frequency: 7.984277115833436e-4
allele num: 16282
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 1.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.70358e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.96e-2

QD
type: SiteQuality
SIO_000300: 1.528e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 3609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1518
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variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-5
allele num: 65940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.146e0

DP
type: SiteQuality
SIO_000300: 1.651745e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: -7.442e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

GenotypeQuality
all individuals: 1518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35724
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 230
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-4
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033060357901122e-5
allele num: 65940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 8.361000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.645636e6

QD
type: SiteQuality
SIO_000300: 1.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 412
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 905
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4970
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GenotypeQuality
all individuals: 2861
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.051524710830704e-4
allele num: 9510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.572819e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.113e0

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1229
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variant carriers: 0

GenotypeQuality
all individuals: 15853
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54526068547764e-5
allele num: 64714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

DP
type: SiteQuality
SIO_000300: 1.572819e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.113e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4947
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.065870816457045e-4
allele num: 9382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.873e1

QD
type: SiteQuality
SIO_000300: 2.142e1

VQSLOD
type: SiteQuality
SIO_000300: -3.524e0

DP
type: SiteQuality
SIO_000300: 1.590434e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.218e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 2.3579e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 601
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GenotypeQuality
all individuals: 616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.691124442393478e-5
allele num: 13002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.152e0

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 2.047e1

DP
type: SiteQuality
SIO_000300: 7.09454e5

FS
type: SiteQuality
SIO_000300: 1.3292e1

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1308
bin: 2.75e1
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GenotypeQuality
all individuals: 2694
bin: 6.25e1
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GenotypeQuality
all individuals: 622
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variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.522e0

VQSLOD
type: SiteQuality
SIO_000300: -1.628e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.041e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

DP
type: SiteQuality
SIO_000300: 7.46527e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 1320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1238
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.507e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 7.8e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.5484e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.873294346978557e-4
allele num: 2052
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -2.809e0

QD
type: SiteQuality
SIO_000300: 9.91e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 7.7424e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 75

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.494321578003586e-3
allele num: 3346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14234
num of homozygotes: 0

South Asian
type: Population
allele count: 60
allele frequency: 6.816632583503749e-3
allele num: 8802
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

DP
type: SiteQuality
SIO_000300: 7.86379e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

FS
type: SiteQuality
SIO_000300: 7.23e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

GenotypeQuality
all individuals: 1304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 509
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GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.993985172751433e-5
allele num: 14298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

FS
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.462e1

DP
type: SiteQuality
SIO_000300: 7.88824e5

VQSLOD
type: SiteQuality
SIO_000300: -2.582e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 5349
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 982
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 392
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GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.675368898978433e-4
allele num: 3524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.094e1

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.586e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 8.0991e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 5353
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.768549280177187e-4
allele num: 3612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10692
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

FS
type: SiteQuality
SIO_000300: 5.017e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 1.013125e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 6.17e0

GenotypeQuality
all individuals: 329
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.574492422076066e-5
allele num: 27976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 7.437e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.41e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.487e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
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GenotypeQuality
all individuals: 1503
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5389
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 890
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GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.195909236177693e-4
allele num: 12516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 3.093846682708835e-3
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37244
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.673785371062467e-4
allele num: 7492
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 2.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.192617e6

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.322e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

ClippingRankSum
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SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 1.269164e6

QD
type: SiteQuality
SIO_000300: 4.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14041095890411e-5
allele num: 46720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.103022281050077e-4
allele num: 9066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.108e0

DP
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SIO_000300: 1.324541e6

MQRankSum
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SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 5.736e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
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SIO_000300: -2.716e0

VQSLOD
type: SiteQuality
SIO_000300: -2.848e-1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.857355126300148e-5
allele num: 53840
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

QD
type: SiteQuality
SIO_000300: 1.122e1

DP
type: SiteQuality
SIO_000300: 1.421615e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.832172957127153e-5
allele num: 54580
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14828
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.63e0

VQSLOD
type: SiteQuality
SIO_000300: -3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.432255e6

QD
type: SiteQuality
SIO_000300: 7.43e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.042e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 9.498480243161094e-5
allele num: 10528
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56982
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
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VQSLOD
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MQ
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.857700167193015e-4
allele num: 10766
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele num: 15488
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Other
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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allele num: 15592
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Latino
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num of homozygotes: 0

European (Finnish)
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allele num: 6274
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Other
type: Population
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
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allele num: 8122
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.412722842118764e-5
allele num: 15594
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Other
type: Population
allele count: 0
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African
type: Population
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6274
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InbreedingCoeff
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6834
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.208103130755064e-5
allele num: 10860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.163718579598351e-4
allele num: 60152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.214e1

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.470145e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664447403462051e-5
allele num: 60080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.210808055059903e-3
allele num: 15692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 1.458782e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1028
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.730415319572246e-4
allele num: 8042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.452885e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 2037
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.341910904655282e-5
allele num: 59846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.432427e6

QD
type: SiteQuality
SIO_000300: 6.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.478e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.378e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.893e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 961
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GenotypeQuality
all individuals: 3009
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.680389850445303e-5
allele num: 59510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.448398576512455e-4
allele num: 8992
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.851166234727879e-4
allele num: 10804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
SIO_000300: 1.773e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 1.40108e6

GenotypeQuality
all individuals: 764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25955
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.664508969853893e-3
allele num: 10814
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 7.559e0

QD
type: SiteQuality
SIO_000300: 1.428e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

DP
type: SiteQuality
SIO_000300: 1.401958e6

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

GenotypeQuality
all individuals: 2922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5373
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.356470887363336e-4
allele num: 7866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.372105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 9.336e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 8.93e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 9.336e0

DP
type: SiteQuality
SIO_000300: 1.372105e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 8.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.271294177472667e-4
allele num: 7866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

FS
type: SiteQuality
SIO_000300: 9.336e0

DP
type: SiteQuality
SIO_000300: 1.372105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 8.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 879
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5439
bin: 9.75e1
variant carriers: 95

GenotypeQuality
all individuals: 566
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.276437847866419e-5
allele num: 10780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.36012785201809e-4
allele num: 58818
num of homozygotes: 0

South Asian
type: Population
allele count: 89
allele frequency: 5.699282786885246e-3
allele num: 15616
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.67e1

DP
type: SiteQuality
SIO_000300: 1.367211e6

GenotypeQuality
all individuals: 2068
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19180
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7922
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 1.306605233297803e-3
allele num: 58166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.455777921239509e-4
allele num: 6196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.660700969425802e-4
allele num: 10728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.065e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

DP
type: SiteQuality
SIO_000300: 1.355684e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
all individuals: 716
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3034
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 457
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17697
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2509
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1008
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5734
bin: 9.75e1
variant carriers: 391

European (Non-Finnish)
type: Population
allele count: 301
allele frequency: 5.188760558524392e-3
allele num: 58010
num of homozygotes: 2

South Asian
type: Population
allele count: 64
allele frequency: 4.111525118848773e-3
allele num: 15566
num of homozygotes: 2

African
type: Population
allele count: 7
allele frequency: 8.031206975676916e-4
allele num: 8716
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.683501683501683e-3
allele num: 10692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.448342452526553e-3
allele num: 6214
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.579952267303103e-3
allele num: 838
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.74e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.357226e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718980988070272e-5
allele num: 58174
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.309e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 1.364707e6

VQSLOD
type: SiteQuality
SIO_000300: -3.693e-1

FS
type: SiteQuality
SIO_000300: 3.907e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.474e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 914
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.141813199360585e-4
allele num: 8758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10738
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 1.391094e6

FS
type: SiteQuality
SIO_000300: 4.064e0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.061e0

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 1678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153088850603002e-5
allele num: 16252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

DP
type: SiteQuality
SIO_000300: 1.612096e6

FS
type: SiteQuality
SIO_000300: 4.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 2.137e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 28485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.97021887334051e-5
allele num: 11148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -2.973e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.67e-1

DP
type: SiteQuality
SIO_000300: 1.615495e6

FS
type: SiteQuality
SIO_000300: 4.425e0

QD
type: SiteQuality
SIO_000300: 2.526e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563868384836732e-5
allele num: 63944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.781e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.618045e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -4.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
all individuals: 1760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.463661000246366e-4
allele num: 8118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560159760359461e-5
allele num: 64096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.654359e6

FS
type: SiteQuality
SIO_000300: 8.805999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.863e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1009
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1647
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1590
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6759
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1746
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39706
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4821
bin: 9.75e1
variant carriers: 863

African
type: Population
allele count: 855
allele frequency: 8.922980588603632e-2
allele num: 9582
num of homozygotes: 35

Other
type: Population
allele count: 2
allele frequency: 2.293577981651376e-3
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 3.646389185343294e-3
allele num: 11244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.536900992838041e-4
allele num: 65066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.26e-2

DP
type: SiteQuality
SIO_000300: 1.715183e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.257e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 5
allele frequency: 5.960896518836433e-4
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.715707e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 42363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.064833065469873e-5
allele num: 65954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.729747e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 3.411e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

QD
type: SiteQuality
SIO_000300: 9.15e0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.828376401755241e-4
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

FS
type: SiteQuality
SIO_000300: 1.651e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 1.731061e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.730741e6

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

FS
type: SiteQuality
SIO_000300: 6.657e0

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.02124183006536e-3
allele num: 9792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

DP
type: SiteQuality
SIO_000300: 1.731018e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 4.052e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.145e0

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
all individuals: 4077
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.209e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.729019e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.042e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 8.01e0

GenotypeQuality
all individuals: 4077
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.132711885195633e-5
allele num: 16306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.720752e6

FS
type: SiteQuality
SIO_000300: 1.278e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.082899395959175e-4
allele num: 9602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.701845e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.685742846432588e-5
allele num: 64024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619324e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.01e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.865e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

GenotypeQuality
all individuals: 992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6076
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variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.80957141072098e-5
allele num: 64024
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619324e6

FS
type: SiteQuality
SIO_000300: 1.865e0

QD
type: SiteQuality
SIO_000300: 9.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 539
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GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577934168586487e-5
allele num: 63374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

DP
type: SiteQuality
SIO_000300: 1.511086e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.74939049488649e-5
allele num: 63166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.487963e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 9.23e0

FS
type: SiteQuality
SIO_000300: 1.924e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.857e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620010368066356e-5
allele num: 61728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 1.387286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.199360341151386e-3
allele num: 7504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60024
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.349288e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.153e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 1.917e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59360
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.251e1

DP
type: SiteQuality
SIO_000300: 1.346989e6

GenotypeQuality
all individuals: 7251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
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variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.5e0
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GenotypeQuality
all individuals: 5781
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1396
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.359650596337981e-5
allele num: 59530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.34723e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.108e1

GenotypeQuality
all individuals: 2024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 803
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13390
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.787068004459309e-4
allele num: 10764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.290339563042906e-5
allele num: 60784
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 2.082e0

DP
type: SiteQuality
SIO_000300: 1.344186e6

GenotypeQuality
all individuals: 910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5661
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.493651979088872e-4
allele num: 13390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.344186e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

FS
type: SiteQuality
SIO_000300: 2.082e0

QD
type: SiteQuality
SIO_000300: 1.308e1

GenotypeQuality
all individuals: 4839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5562
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650491846570278e-5
allele num: 60588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.349667e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

VQSLOD
type: SiteQuality
SIO_000300: -1.517e0

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.478e1