7-100459502-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459502
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459502
    reference: chr 7
allele count: 46
allele frequency: 3.947074874294246e-4
allele num: 116542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2659T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1413T>C
  hgvsp: ENST00000275729.3:c.1413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1680T>C
  hgvsp: ENST00000354161.3:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.2993T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2964T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1413T>C
  hgvsp: ENST00000415287.1:c.1413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1680T>C
  hgvsp: ENST00000540482.1:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1680T>C
  hgvsp: ENST00000428758.1:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.209T>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27992
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr560Tyr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

7-100459502-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459502
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459502
    reference: chr 7
allele count: 1
allele frequency: 8.580597552813579e-6
allele num: 116542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1413T>G
  hgvsp: ENSP00000413796.1:p.Tyr471Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1680T>G
  hgvsp: ENSP00000443702.1:p.Tyr560Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1680T>G
  hgvsp: ENSP00000408301.1:p.Tyr560Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2964T>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1680T>G
  hgvsp: ENSP00000275730.4:p.Tyr560Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2659T>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1413T>G
  hgvsp: ENSP00000275729.3:p.Tyr471Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.209T>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.2993T>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr560Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-100459514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459514
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459514
    reference: chr 7
allele count: 1
allele frequency: 8.771006560712907e-6
allele num: 114012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1425C>T
  hgvsp: ENST00000415287.1:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2976C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1425C>T
  hgvsp: ENST00000275729.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.221C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1692C>T
  hgvsp: ENST00000540482.1:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1692C>T
  hgvsp: ENST00000428758.1:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2671C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1692C>T
  hgvsp: ENST00000354161.3:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3005C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9331
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His564His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

7-100459515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459515
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459515
    reference: chr 7
allele count: 1
allele frequency: 8.809020436927414e-6
allele num: 113520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1426G>A
  hgvsp: ENSP00000275729.3:p.Val476Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1426G>A
  hgvsp: ENSP00000413796.1:p.Val476Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2672G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3006G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1693G>A
  hgvsp: ENSP00000408301.1:p.Val565Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1693G>A
  hgvsp: ENSP00000443702.1:p.Val565Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1693G>A
  hgvsp: ENSP00000275730.4:p.Val565Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.222G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2977G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val565Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

7-100459523-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459523
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459523
    reference: chr 7
allele count: 4
allele frequency: 3.606983119319002e-5
allele num: 110896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1434G>C
  hgvsp: ENST00000275729.3:c.1434G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3014G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1701G>C
  hgvsp: ENST00000354161.3:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2680G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1701G>C
  hgvsp: ENST00000428758.1:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.230G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1701G>C
  hgvsp: ENST00000540482.1:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2985G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1434G>C
  hgvsp: ENST00000415287.1:c.1434G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24197
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu567Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

7-100459532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459532
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459532
    reference: chr 7
allele count: 62
allele frequency: 5.737340835060704e-4
allele num: 108064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2689C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.239C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1443C>T
  hgvsp: ENST00000415287.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3023C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1710C>T
  hgvsp: ENST00000428758.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1710C>T
  hgvsp: ENST00000354161.3:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1443C>T
  hgvsp: ENST00000275729.3:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2994C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1710C>T
  hgvsp: ENST00000540482.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21257
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12426
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1710C>T
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-100459542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459542
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459542
    reference: chr 7
allele count: 1
allele frequency: 9.484966328369534e-6
allele num: 105430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+9C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+9C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

7-100459547-CCACT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459547
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459543
    reference: chr 7
allele count: 6
allele frequency: 5.793630868465267e-5
allele num: 103562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+28_2995+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+28_2690+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+28_3024+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+28_1711+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+28_1711+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+28_1711+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+28_1444+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+28_1444+31delACTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+28_240+31delACTC
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18077
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19860
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: CCACT
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-100459552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459552
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459552
    reference: chr 7
allele count: 1
allele frequency: 9.949258780220874e-6
allele num: 100510
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+19C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+19C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

7-100459564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459564
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459564
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 95236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+31C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+31C>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6955
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/7-100459565-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459565
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459565
    reference: chr 7
allele count: 1
allele frequency: 1.079960257462525e-5
allele num: 92596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+32C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+32C>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-100459569-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459569
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459569
    reference: chr 7
allele count: 1
allele frequency: 1.233319355713969e-5
allele num: 81082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+36C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+36C>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21127
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

7-100459575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459575
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459575
    reference: chr 7
allele count: 7
allele frequency: 1.542121959816708e-4
allele num: 45392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+42C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+42C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18222
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

7-100459583-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
allele count: 1
allele frequency: 6.176652254478072e-5
allele num: 16190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+50A>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19965
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5413
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

7-100459583-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
allele count: 28
allele frequency: 1.72946263125386e-3
allele num: 16190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+50A>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+50A>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19965
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 13382
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-100459583-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459582
    reference: chr 7
allele count: 2
allele frequency: 1.235330450895614e-4
allele num: 16190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+52delC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+52delC
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19965
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6112
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: AC
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-100459585-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459586
    reference: chr 7
allele count: 357
allele frequency: 2.489887013530478e-2
allele num: 14338
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+66dupT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+66dupT
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 21154
  bin: 7.5e0
  variant carriers: 615
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 1.25e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 32858
  bin: 2.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 7.5e0
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 6.25e1
  variant carriers: 34
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-100459585-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459587
    reference: chr 7
allele count: 4
allele frequency: 2.789789370902497e-4
allele num: 14338
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+65_1444+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+65_1444+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+65_3024+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+65_1711+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+65_2995+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+65_1711+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+65_1711+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+65_2690+66dupTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+65_240+66dupTT
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21154
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32858
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

7-100459585-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459584
    reference: chr 7
allele count: 1734
allele frequency: 1.209373692286232e-1
allele num: 14338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+66delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+66delT
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21154
  bin: 7.5e0
  variant carriers: 1645
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 1.25e1
  variant carriers: 1143
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 7.5e0
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.75e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 240
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: CT
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-100459585-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459583
    reference: chr 7
allele count: 123
allele frequency: 8.578602315525178e-3
allele num: 14338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1711+65_1711+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1711+65_1711+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2995+65_2995+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1711+65_1711+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3024+65_3024+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2690+65_2690+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1444+65_1444+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.240+65_240+66delTT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1444+65_1444+66delTT
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 1.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21154
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 10
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CTT
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

7-100459585-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100459585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100459582
    reference: chr 7
allele count: 7
allele frequency: 4.882131399079369e-4
allele num: 14338
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21154
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32858
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1008
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 956
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 2.079002079002079e-3
  allele num: 962
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 5.835667600373483e-4
  allele num: 8568
  num of homozygotes: 0
population: African
population: South Asian
population: Other
reference allele: CTTT
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-100460253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460253
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460253
    reference: chr 7
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-50A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-50A>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-100460270-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460270
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460270
    reference: chr 7
allele count: 2
allele frequency: 1.652291728627607e-5
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-33C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-33C>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36068
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-100460272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460272
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460272
    reference: chr 7
allele count: 3
allele frequency: 2.477536997885835e-5
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-31G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-31G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

7-100460273-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460273
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460273
    reference: chr 7
allele count: 2
allele frequency: 1.651554938975045e-5
allele num: 121098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-30G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-30G>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

7-100460276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460276
    reference: chr 7
allele count: 3
allele frequency: 2.477168761250475e-5
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-27A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-27A>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-100460277-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460277
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460277
    reference: chr 7
allele count: 200
allele frequency: 1.670341417785795e-3
allele num: 119736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-26C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-26C>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 35203
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.25e1
  variant carriers: 17
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-100460281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460281
    reference: chr 7
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-22C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-22C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-100460287-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460287
    reference: chr 7
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-16C>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-16C>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35944
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

7-100460287-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460286
    reference: chr 7
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-14delT
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-14delT
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: CT
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

7-100460294-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460294
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460291
    reference: chr 7
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-8_2996-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-8_241-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-8_1712-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-8_1712-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-8_2691-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-8_1712-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-8_3025-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-8_1445-6delCTC
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-8_1445-6delCTC
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1712-8_1712-6delCTC
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: TCTC
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

7-100460298-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460298
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460298
    reference: chr 7
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1712-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3025-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2996-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.241-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1445-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1445-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2691-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1712-5T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1712-5T>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1712-5T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

7-100460305-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460305
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460305
    reference: chr 7
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1714T>A
  hgvsp: ENSP00000408301.1:p.Ser572Thr
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.243T>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1447T>A
  hgvsp: ENSP00000275729.3:p.Ser483Thr
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.2998T>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1714T>A
  hgvsp: ENSP00000443702.1:p.Ser572Thr
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1447T>A
  hgvsp: ENSP00000413796.1:p.Ser483Thr
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2693T>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1714T>A
  hgvsp: ENSP00000275730.4:p.Ser572Thr
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3027T>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser572Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-100460315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460315
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460315
    reference: chr 7
allele count: 4
allele frequency: 3.295815961636702e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2703C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.253C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3037C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1724C>T
  hgvsp: ENSP00000443702.1:p.Ser575Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1724C>T
  hgvsp: ENSP00000408301.1:p.Ser575Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3008C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1724C>T
  hgvsp: ENSP00000275730.4:p.Ser575Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1457C>T
  hgvsp: ENSP00000275729.3:p.Ser486Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1457C>T
  hgvsp: ENSP00000413796.1:p.Ser486Leu
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser575Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

7-100460328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460328
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2716G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1737G>A
  hgvsp: ENST00000540482.1:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1737G>A
  hgvsp: ENST00000428758.1:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3021G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.266G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1470G>A
  hgvsp: ENST00000275729.3:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1470G>A
  hgvsp: ENST00000415287.1:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1737G>A
  hgvsp: ENST00000354161.3:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3050G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln579Gln
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-100460330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460330
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460330
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1739C>T
  hgvsp: ENSP00000275730.4:p.Pro580Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.268C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1739C>T
  hgvsp: ENSP00000408301.1:p.Pro580Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2718C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3023C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1472C>T
  hgvsp: ENSP00000275729.3:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1472C>T
  hgvsp: ENSP00000413796.1:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3052C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1739C>T
  hgvsp: ENSP00000443702.1:p.Pro580Leu
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro580Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

7-100460331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460331
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460331
    reference: chr 7
allele count: 5856
allele frequency: 4.825313117996045e-2
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1473G>A
  hgvsp: ENST00000415287.1:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3053G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1473G>A
  hgvsp: ENST00000275729.3:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1740G>A
  hgvsp: ENST00000428758.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1740G>A
  hgvsp: ENST00000354161.3:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.269G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1740G>A
  hgvsp: ENST00000540482.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3024G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2719G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 6.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 6.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 8.75e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 5.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.75e1
  variant carriers: 2654
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Pro580Pro
num of homozygotes: 627
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-100460334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460334
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460334
    reference: chr 7
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3027G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1743G>A
  hgvsp: ENST00000540482.1:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2722G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1476G>A
  hgvsp: ENST00000415287.1:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1743G>A
  hgvsp: ENST00000354161.3:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1476G>A
  hgvsp: ENST00000275729.3:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.272G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3056G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1743G>A
  hgvsp: ENST00000428758.1:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln581Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

7-100460341-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460341
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460341
    reference: chr 7
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1483G>T
  hgvsp: ENSP00000275729.3:p.Ala495Ser
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.279G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1750G>T
  hgvsp: ENSP00000443702.1:p.Ala584Ser
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1750G>T
  hgvsp: ENSP00000408301.1:p.Ala584Ser
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1483G>T
  hgvsp: ENSP00000413796.1:p.Ala495Ser
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1750G>T
  hgvsp: ENSP00000275730.4:p.Ala584Ser
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2729G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3063G>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3034G>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala584Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

7-100460342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460342
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460342
    reference: chr 7
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3064C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2730C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1751C>T
  hgvsp: ENSP00000408301.1:p.Ala584Val
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1484C>T
  hgvsp: ENSP00000275729.3:p.Ala495Val
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1751C>T
  hgvsp: ENSP00000275730.4:p.Ala584Val
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3035C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1751C>T
  hgvsp: ENSP00000443702.1:p.Ala584Val
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.280C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1484C>T
  hgvsp: ENSP00000413796.1:p.Ala495Val
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala584Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-100460350-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460350
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460350
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1759A>G
  hgvsp: ENSP00000443702.1:p.Ser587Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3043A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3072A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1492A>G
  hgvsp: ENSP00000275729.3:p.Ser498Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1759A>G
  hgvsp: ENSP00000275730.4:p.Ser587Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1759A>G
  hgvsp: ENSP00000408301.1:p.Ser587Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.288A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1492A>G
  hgvsp: ENSP00000413796.1:p.Ser498Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2738A>G
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser587Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-100460353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460353
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460353
    reference: chr 7
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.291C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1762C>T
  hgvsp: ENST00000354161.3:c.1762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1762C>T
  hgvsp: ENST00000428758.1:c.1762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1495C>T
  hgvsp: ENST00000415287.1:c.1495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1762C>T
  hgvsp: ENST00000540482.1:c.1762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1495C>T
  hgvsp: ENST00000275729.3:c.1495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2741C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3046C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3075C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36267
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu588Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-100460357-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460357
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460357
    reference: chr 7
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1499T>C
  hgvsp: ENSP00000413796.1:p.Val500Ala
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2745T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.295T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1766T>C
  hgvsp: ENSP00000275730.4:p.Val589Ala
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3079T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1499T>C
  hgvsp: ENSP00000275729.3:p.Val500Ala
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1766T>C
  hgvsp: ENSP00000408301.1:p.Val589Ala
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3050T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1766T>C
  hgvsp: ENSP00000443702.1:p.Val589Ala
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val589Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

7-100460360-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460360
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460360
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1769A>G
  hgvsp: ENSP00000443702.1:p.Asp590Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1769A>G
  hgvsp: ENSP00000408301.1:p.Asp590Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3053A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1502A>G
  hgvsp: ENSP00000413796.1:p.Asp501Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3082A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.298A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2748A>G
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1502A>G
  hgvsp: ENSP00000275729.3:p.Asp501Gly
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1769A>G
  hgvsp: ENSP00000275730.4:p.Asp590Gly
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp590Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-100460361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460361
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1770C>T
  hgvsp: ENST00000354161.3:c.1770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1770C>T
  hgvsp: ENST00000540482.1:c.1770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3083C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2749C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1770C>T
  hgvsp: ENST00000428758.1:c.1770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1503C>T
  hgvsp: ENST00000275729.3:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3054C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1503C>T
  hgvsp: ENST00000415287.1:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.299C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp590Asp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-100460362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460362
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460362
    reference: chr 7
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2750C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1771C>T
  hgvsp: ENSP00000275730.4:p.Arg591Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1504C>T
  hgvsp: ENSP00000275729.3:p.Arg502Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1771C>T
  hgvsp: ENSP00000443702.1:p.Arg591Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3055C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3084C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1504C>T
  hgvsp: ENSP00000413796.1:p.Arg502Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.300C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1771C>T
  hgvsp: ENSP00000408301.1:p.Arg591Cys
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg591Cys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

7-100460363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460363
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460363
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3085G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2751G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3056G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1505G>A
  hgvsp: ENSP00000413796.1:p.Arg502His
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1772G>A
  hgvsp: ENSP00000275730.4:p.Arg591His
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1772G>A
  hgvsp: ENSP00000443702.1:p.Arg591His
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1772G>A
  hgvsp: ENSP00000408301.1:p.Arg591His
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1505G>A
  hgvsp: ENSP00000275729.3:p.Arg502His
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.301G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg591His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-100460371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460371
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460371
    reference: chr 7
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3064G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1513G>A
  hgvsp: ENSP00000413796.1:p.Val505Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3093G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1780G>A
  hgvsp: ENSP00000443702.1:p.Val594Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2759G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1780G>A
  hgvsp: ENSP00000408301.1:p.Val594Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1513G>A
  hgvsp: ENSP00000275729.3:p.Val505Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.309G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1780G>A
  hgvsp: ENSP00000275730.4:p.Val594Met
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val594Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-100460393-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460393
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460393
    reference: chr 7
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3086C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.331C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1535C>A
  hgvsp: ENSP00000413796.1:p.Thr512Asn
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1535C>A
  hgvsp: ENSP00000275729.3:p.Thr512Asn
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2781C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1802C>A
  hgvsp: ENSP00000443702.1:p.Thr601Asn
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1802C>A
  hgvsp: ENSP00000275730.4:p.Thr601Asn
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1802C>A
  hgvsp: ENSP00000408301.1:p.Thr601Asn
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3115C>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr601Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

7-100460393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460393
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460393
    reference: chr 7
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.331C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1535C>T
  hgvsp: ENSP00000275729.3:p.Thr512Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1802C>T
  hgvsp: ENSP00000408301.1:p.Thr601Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3086C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1802C>T
  hgvsp: ENSP00000275730.4:p.Thr601Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1802C>T
  hgvsp: ENSP00000443702.1:p.Thr601Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2781C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1535C>T
  hgvsp: ENSP00000413796.1:p.Thr512Ile
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3115C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr601Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-100460396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460396
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460396
    reference: chr 7
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3089T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1538T>C
  hgvsp: ENSP00000413796.1:p.Leu513Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3118T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1805T>C
  hgvsp: ENSP00000408301.1:p.Leu602Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2784T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1805T>C
  hgvsp: ENSP00000275730.4:p.Leu602Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1538T>C
  hgvsp: ENSP00000275729.3:p.Leu513Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1805T>C
  hgvsp: ENSP00000443702.1:p.Leu602Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.334T>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu602Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

7-100460399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460399
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460399
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1541C>T
  hgvsp: ENSP00000413796.1:p.Ser514Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1808C>T
  hgvsp: ENSP00000275730.4:p.Ser603Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3092C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2787C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1541C>T
  hgvsp: ENSP00000275729.3:p.Ser514Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1808C>T
  hgvsp: ENSP00000408301.1:p.Ser603Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.337C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1808C>T
  hgvsp: ENSP00000443702.1:p.Ser603Leu
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3121C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser603Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

7-100460406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460406
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460406
    reference: chr 7
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1548C>T
  hgvsp: ENST00000275729.3:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1815C>T
  hgvsp: ENST00000354161.3:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3099C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.344C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3128C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2794C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1548C>T
  hgvsp: ENST00000415287.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1815C>T
  hgvsp: ENST00000428758.1:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1815C>T
  hgvsp: ENST00000540482.1:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser605Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-100460407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460407
    reference: chr 7
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1816G>A
  hgvsp: ENSP00000443702.1:p.Val606Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1549G>A
  hgvsp: ENSP00000413796.1:p.Val517Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3100G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1816G>A
  hgvsp: ENSP00000408301.1:p.Val606Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1549G>A
  hgvsp: ENSP00000275729.3:p.Val517Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1816G>A
  hgvsp: ENSP00000275730.4:p.Val606Met
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2795G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3129G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.345G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val606Met
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-100460410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460410
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460410
    reference: chr 7
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3103C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1552C>T
  hgvsp: ENSP00000275729.3:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1819C>T
  hgvsp: ENSP00000443702.1:p.Arg607Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1819C>T
  hgvsp: ENSP00000408301.1:p.Arg607Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1819C>T
  hgvsp: ENSP00000275730.4:p.Arg607Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.348C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3132C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1552C>T
  hgvsp: ENSP00000413796.1:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2798C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg607Cys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

7-100460422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460422
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460422
    reference: chr 7
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1831C>T
  hgvsp: ENSP00000443702.1:p.Gln611Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1831C>T
  hgvsp: ENSP00000408301.1:p.Gln611Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1831C>T
  hgvsp: ENSP00000275730.4:p.Gln611Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1564C>T
  hgvsp: ENSP00000413796.1:p.Gln522Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1564C>T
  hgvsp: ENSP00000275729.3:p.Gln522Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2810C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.360C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3144C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3115C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln611Ter
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-100460432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460432
    reference: chr 7
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1841T>C
  hgvsp: ENSP00000408301.1:p.Leu614Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1841T>C
  hgvsp: ENSP00000275730.4:p.Leu614Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2820T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1574T>C
  hgvsp: ENSP00000413796.1:p.Leu525Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3154T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3125T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1841T>C
  hgvsp: ENSP00000443702.1:p.Leu614Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1574T>C
  hgvsp: ENSP00000275729.3:p.Leu525Pro
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.370T>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu614Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-100460434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460434
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460434
    reference: chr 7
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3127C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1843C>T
  hgvsp: ENSP00000408301.1:p.Arg615Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1576C>T
  hgvsp: ENSP00000413796.1:p.Arg526Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.372C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1843C>T
  hgvsp: ENSP00000275730.4:p.Arg615Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1576C>T
  hgvsp: ENSP00000275729.3:p.Arg526Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1843C>T
  hgvsp: ENSP00000443702.1:p.Arg615Ter
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2822C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3156C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36253
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg615Ter
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

7-100460435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460435
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460435
    reference: chr 7
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.373G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1844G>A
  hgvsp: ENSP00000275730.4:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1577G>A
  hgvsp: ENSP00000275729.3:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1844G>A
  hgvsp: ENSP00000443702.1:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1844G>A
  hgvsp: ENSP00000408301.1:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1577G>A
  hgvsp: ENSP00000413796.1:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3128G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2823G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3157G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg615Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-100460442-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460442
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460442
    reference: chr 7
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1584C>A
  hgvsp: ENST00000415287.1:c.1584C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1851C>A
  hgvsp: ENST00000540482.1:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1851C>A
  hgvsp: ENST00000354161.3:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1851C>A
  hgvsp: ENST00000428758.1:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3135C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3164C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2830C>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1584C>A
  hgvsp: ENST00000275729.3:c.1584C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.380C>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser617Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-100460442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460442
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460442
    reference: chr 7
allele count: 17
allele frequency: 1.400906468891636e-4
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1584C>T
  hgvsp: ENST00000415287.1:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1584C>T
  hgvsp: ENST00000275729.3:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1851C>T
  hgvsp: ENST00000354161.3:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1851C>T
  hgvsp: ENST00000428758.1:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3164C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1851C>T
  hgvsp: ENST00000540482.1:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.380C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2830C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3135C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36256
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser617Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

7-100460448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460448
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460448
    reference: chr 7
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1857C>T
  hgvsp: ENST00000354161.3:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3170C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1590C>T
  hgvsp: ENST00000415287.1:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3141C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1590C>T
  hgvsp: ENST00000275729.3:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2836C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1857C>T
  hgvsp: ENST00000540482.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.386C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1857C>T
  hgvsp: ENST00000428758.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1857C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-100460452-G-GGCATGAAGCCCAACACGTTGGTCCTAGGTTTCTACGATGACGCTCCACCGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460452
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460503
    reference: chr 7
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: GGCATGAAGCCCAACACGTTGGTCCTAGGTTTCTACGATGACGCTCCACCGC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8040
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

7-100460461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460461
    reference: chr 7
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+12C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+12C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-100460468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460468
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460468
    reference: chr 7
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+19G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+19G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

7-100460471-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460471
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460471
    reference: chr 7
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+22G>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+22G>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

7-100460476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460476
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460476
    reference: chr 7
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+27C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+27C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

7-100460478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460478
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460478
    reference: chr 7
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+29G>A
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+29G>A
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

7-100460483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460483
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460483
    reference: chr 7
allele count: 1177
allele frequency: 9.715068674062336e-3
allele num: 121152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+34C>T
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+34C>T
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 5.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 5.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 3.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 7242
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 3.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 6.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6242
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 12
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

7-100460487-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100460487
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100460487
    reference: chr 7
allele count: 2
allele frequency: 1.651200422707308e-5
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000487651
  gene symbol: SLC12A9
  hgvsc: ENST00000487651.1:n.3171+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000408301
  ensembl transcript: ENST00000428758
  gene symbol: SLC12A9
  hgvsc: ENST00000428758.1:c.1858+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000482184
  gene symbol: SLC12A9
  hgvsc: ENST00000482184.1:n.387+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275730
  ensembl transcript: ENST00000354161
  gene symbol: SLC12A9
  hgvsc: ENST00000354161.3:c.1858+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000413796
  ensembl transcript: ENST00000415287
  gene symbol: SLC12A9
  hgvsc: ENST00000415287.1:c.1591+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000443702
  ensembl transcript: ENST00000540482
  gene symbol: SLC12A9
  hgvsc: ENST00000540482.1:c.1858+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000475687
  gene symbol: SLC12A9
  hgvsc: ENST00000475687.1:n.2837+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl transcript: ENST00000467972
  gene symbol: SLC12A9
  hgvsc: ENST00000467972.1:n.3142+38T>C
  variant of: http://identifiers.org/hgnc/17435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146828
  ensembl protein: ENSP00000275729
  ensembl transcript: ENST00000275729
  gene symbol: SLC12A9
  hgvsc: ENST00000275729.3:c.1591+38T>C
  variant of: http://identifiers.org/hgnc/17435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38268
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 45

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14622
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 4.522613065326633e-3
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

FS
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 1.564785e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2366
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54421075388369e-5
allele num: 64758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.564785e6

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

QD
type: SiteQuality
SIO_000300: 1.115e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.517948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.726e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 6670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.854258898530193e-5
allele num: 11294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.832e0

MQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.507291e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.065e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597444089456869e-5
allele num: 62600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.994423457456377e-5
allele num: 11118
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.089864158829676e-4
allele num: 9570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.442594e6

FS
type: SiteQuality
SIO_000300: 8.433e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

QD
type: SiteQuality
SIO_000300: 9.58e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.249e-1

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 303
bin: 4.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.466376390904693e-4
allele num: 8268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 5.37109375e-4
allele num: 61440
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 1.93935119887165e-3
allele num: 11344
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.285e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.355986e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.40379913485048e-5
allele num: 10634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQRankSum
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MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.265e1

BaseQRankSum
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SIO_000300: -1.621e0

ReadPosRankSum
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SIO_000300: 6.17e-1

DP
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SIO_000300: 1.228427e6

FS
type: SiteQuality
SIO_000300: 1.435e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.37006706433458e-5
allele num: 59346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.246882793017456e-4
allele num: 8020
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.965022597759874e-4
allele num: 10178
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.099384344766931e-4
allele num: 9096
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.85e1

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

QD
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SIO_000300: 4.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.166272e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.453488372093023e-3
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

DP
type: SiteQuality
SIO_000300: 1.035954e6

QD
type: SiteQuality
SIO_000300: 1.048e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.569e0

DP
type: SiteQuality
SIO_000300: 8.86952e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

QD
type: SiteQuality
SIO_000300: 2.226e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.846108403485453e-5
allele num: 54168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
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InbreedingCoeff
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SIO_000300: -1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 3.132e0

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 8.56183e5

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087595507494468e-5
allele num: 47902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7008
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.84821e5

QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.23e-2

VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.793296089385475e-3
allele num: 358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 2.168883747831116e-4
allele num: 27664
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.871e1

DP
type: SiteQuality
SIO_000300: 6.98823e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.987220447284345e-4
allele num: 1252
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 1494
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.044e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.586e-1

FS
type: SiteQuality
SIO_000300: 1.242e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 6.63021e5

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 49
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6112
bin: 1.25e1
variant carriers: 19

GenotypeQuality
all individuals: 5413
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24568
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 43
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 843
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.677376171352075e-3
allele num: 1494
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 3.993610223642172e-3
allele num: 1252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.278772378516624e-3
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.77264325323475e-3
allele num: 1082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.093439363817097e-3
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.8328611898017e-3
allele num: 1412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.044e-1

QD
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 6.63021e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

VQSLOD
type: SiteQuality
SIO_000300: -3.586e-1

GenotypeQuality
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24568
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.988071570576541e-4
allele num: 10060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.044e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.586e-1

FS
type: SiteQuality
SIO_000300: 1.242e1

QD
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 6.63021e5

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
all individuals: 1003
bin: 3.25e1
variant carriers: 75

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 75

GenotypeQuality
all individuals: 3608
bin: 1.25e1
variant carriers: 48

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 135

GenotypeQuality
all individuals: 194
bin: 6.75e1
variant carriers: 46

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 91

GenotypeQuality
all individuals: 271
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 36

GenotypeQuality
all individuals: 3792
bin: 1.75e1
variant carriers: 52

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 77

East Asian
type: Population
allele count: 21
allele frequency: 2.182952182952183e-2
allele num: 962
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.459016393442623e-2
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 56
allele frequency: 4.294478527607362e-2
allele num: 1304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 1.359832635983264e-2
allele num: 956
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 3.174603174603174e-2
allele num: 1008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 186
allele frequency: 2.170868347338935e-2
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 46
allele frequency: 3.244005641748942e-2
allele num: 1418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

DP
type: SiteQuality
SIO_000300: 6.36511e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.709e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3792
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 956
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.984126984126984e-3
allele num: 1008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.03950103950104e-3
allele num: 962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 3.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.709e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 6.36511e5

GenotypeQuality
all individuals: 32858
bin: 2.5e0
variant carriers: 61

GenotypeQuality
all individuals: 1003
bin: 3.25e1
variant carriers: 227

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 513

GenotypeQuality
all individuals: 3608
bin: 1.25e1
variant carriers: 164

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 341

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 154

GenotypeQuality
all individuals: 3792
bin: 1.75e1
variant carriers: 113

GenotypeQuality
all individuals: 194
bin: 6.75e1
variant carriers: 125

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 168

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 34

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 47

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 303

GenotypeQuality
all individuals: 303
bin: 6.25e1
variant carriers: 229

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 130

African
type: Population
allele count: 192
allele frequency: 1.354019746121298e-1
allele num: 1418
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 1.639344262295082e-1
allele num: 122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 43
allele frequency: 4.497907949790795e-2
allele num: 956
num of homozygotes: 0

East Asian
type: Population
allele count: 95
allele frequency: 9.875259875259876e-2
allele num: 962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1012
allele frequency: 1.181139122315593e-1
allele num: 8568
num of homozygotes: 1

Latino
type: Population
allele count: 135
allele frequency: 1.339285714285714e-1
allele num: 1008
num of homozygotes: 0

South Asian
type: Population
allele count: 237
allele frequency: 1.817484662576687e-1
allele num: 1304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.709e-1

DP
type: SiteQuality
SIO_000300: 6.36511e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 32858
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3792
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 271
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 194
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 303
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 15

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 6

South Asian
type: Population
allele count: 8
allele frequency: 6.134969325153374e-3
allele num: 1304
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.639344262295082e-2
allele num: 122
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.952380952380952e-3
allele num: 1008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 2.092050209205021e-3
allele num: 956
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 7.757404795486601e-3
allele num: 1418
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.158004158004158e-3
allele num: 962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 1.050420168067227e-2
allele num: 8568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.46e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.709e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 6.36511e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 6.36511e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.709e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

QD
type: SiteQuality
SIO_000300: 3.46e0

GenotypeQuality
all individuals: 36040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5191
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 2.590192e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 1.454e0

QD
type: SiteQuality
SIO_000300: 1.305e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -2.799e-1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.198e0

QD
type: SiteQuality
SIO_000300: 1.094e1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 2.606383e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 4.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36070
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3394
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925669170036588e-4
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.583e1

DP
type: SiteQuality
SIO_000300: 2.608393e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.708e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.277e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.158e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.479e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36073
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925669170036588e-4
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.609185e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.522e0

QD
type: SiteQuality
SIO_000300: 1.628e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

FS
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -3.379e0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36078
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1975
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

DP
type: SiteQuality
SIO_000300: 2.611281e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 360
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3127
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 7033
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 17

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1939
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2757
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3327
bin: 9.25e1
variant carriers: 4

African
type: Population
allele count: 31
allele frequency: 3.05178184682024e-3
allele num: 10158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.963788300835655e-4
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.342539517109606e-4
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.277904328018223e-3
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 126
allele frequency: 1.915010031004924e-3
allele num: 65796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.748338081671415e-3
allele num: 6318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.457e0

FS
type: SiteQuality
SIO_000300: 4.3747e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.611245e6

VQSLOD
type: SiteQuality
SIO_000300: -1.15e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

QD
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

GenotypeQuality
all individuals: 3295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 35937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3393
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.09e0

DP
type: SiteQuality
SIO_000300: 2.595223e6

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

FS
type: SiteQuality
SIO_000300: 3.633e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.597744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

QD
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 35944
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
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variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

QD
type: SiteQuality
SIO_000300: 1.065e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.597744e6

GenotypeQuality
all individuals: 3398
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
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variant carriers: 0

GenotypeQuality
all individuals: 1997
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 4.166e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.713e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 2.599702e6

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.106e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.592e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 6.067e0

VQSLOD
type: SiteQuality
SIO_000300: -1.058e-1

GenotypeQuality
all individuals: 3357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.601696e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

VQSLOD
type: SiteQuality
SIO_000300: -1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 7.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 7.578e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 1.247e0

DP
type: SiteQuality
SIO_000300: 2.602875e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
all individuals: 3401
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8150
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GenotypeQuality
all individuals: 3062
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

DP
type: SiteQuality
SIO_000300: 2.603622e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -6.49e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2004
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.28e-1

FS
type: SiteQuality
SIO_000300: 2.325e0

VQSLOD
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.251e1

DP
type: SiteQuality
SIO_000300: 2.60375e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5223

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 339
allele frequency: 5.080173834856886e-3
allele num: 66730
num of homozygotes: 4

Latino
type: Population
allele count: 556
allele frequency: 4.803040774015204e-2
allele num: 11576
num of homozygotes: 13

South Asian
type: Population
allele count: 2062
allele frequency: 1.248788759689922e-1
allele num: 16512
num of homozygotes: 169

East Asian
type: Population
allele count: 2816
allele frequency: 3.267579484799257e-1
allele num: 8618
num of homozygotes: 441

European (Finnish)
type: Population
allele count: 27
allele frequency: 4.083484573502722e-3
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.882952142994426e-3
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 26
allele frequency: 2.869757174392936e-2
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.805e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.35e0

DP
type: SiteQuality
SIO_000300: 2.893353e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8292
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.917e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 2.651037e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
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VQSLOD
type: SiteQuality
SIO_000300: -3.028e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1807e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.651202e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.024e0

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1900
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GenotypeQuality
all individuals: 5
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

DP
type: SiteQuality
SIO_000300: 2.651207e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.995e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 3331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.814e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
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MQRankSum
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SIO_000300: -3.33e-1

QD
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SIO_000300: 1.383e1

ClippingRankSum
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SIO_000300: -6.1e-1

MQ
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.714e0

InbreedingCoeff
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SIO_000300: 4.0e-4

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.651204e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 5.0e-4

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
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SIO_000300: -1.303e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 0
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Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.538e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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BaseQRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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African
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Latino
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East Asian
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DP
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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South Asian
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Latino
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Other
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.096e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.651233e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.651233e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.096e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990110878034162e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.096e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.65165e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.184e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.109e0

MQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.65093e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 36255
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993946114424431e-5
allele num: 66734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.224e1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 2.650989e6

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.48e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.32e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.231e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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European (Non-Finnish)
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allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.931e1

BaseQRankSum
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SIO_000300: 7.73e-1

ClippingRankSum
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SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 2.649977e6

QD
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MQRankSum
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SIO_000300: 6.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
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Latino
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.649591e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.902e1

FS
type: SiteQuality
SIO_000300: 5.893e0

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

ReadPosRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

DP
type: SiteQuality
SIO_000300: 2.650024e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649422702054281e-4
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 5
allele frequency: 7.562008469449486e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 2.650024e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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ClippingRankSum
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MQ
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DP
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SIO_000300: 2.647736e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
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QD
type: SiteQuality
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VQSLOD
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MQ
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66648
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Other
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DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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South Asian
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allele num: 16470
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African
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Other
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

GenotypeQuality
all individuals: 2894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36248
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7390
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 2.636849e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.275e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

GenotypeQuality
all individuals: 381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36248
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 2.630448e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

GenotypeQuality
all individuals: 352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

DP
type: SiteQuality
SIO_000300: 2.628129e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.068e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.072e0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36761
bin: 9.75e1
variant carriers: 1162

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2818
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 1.735441573467027e-3
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.077155824508321e-4
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 693
allele frequency: 1.040478049366404e-2
allele num: 66604
num of homozygotes: 7

South Asian
type: Population
allele count: 361
allele frequency: 2.196665449677498e-2
allele num: 16434
num of homozygotes: 5

Other
type: Population
allele count: 15
allele frequency: 1.655629139072848e-2
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 82
allele frequency: 7.084845343010195e-3
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

QD
type: SiteQuality
SIO_000300: 1.425e1

VQSLOD
type: SiteQuality
SIO_000300: 5.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

DP
type: SiteQuality
SIO_000300: 2.647908e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0