9-130572128-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572128
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572129
    reference: chr 9
allele count: 26
allele frequency: 4.961832061068702e-2
allele num: 524
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+20dupG
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+20dupG
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.5e0
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 9174
  bin: 7.5e0
  variant carriers: 16
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

9-130571917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571917
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571917
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 99620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-46G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-46G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

9-130571918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571918
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571918
    reference: chr 9
allele count: 1
allele frequency: 1.001983928177792e-5
allele num: 99802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-45G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-45G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

9-130571918-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571918
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571918
    reference: chr 9
allele count: 1
allele frequency: 1.001983928177792e-5
allele num: 99802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-45G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-45G>C
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

9-130571920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571920
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571920
    reference: chr 9
allele count: 1
allele frequency: 1.00128164049984e-5
allele num: 99872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-43G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-43G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

9-130571920-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571920
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571920
    reference: chr 9
allele count: 1
allele frequency: 1.00128164049984e-5
allele num: 99872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-43G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-43G>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

9-130571921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571921
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571921
    reference: chr 9
allele count: 1
allele frequency: 1.000660435887686e-5
allele num: 99934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-42G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-42G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-130571921-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571921
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571921
    reference: chr 9
allele count: 1
allele frequency: 1.000660435887686e-5
allele num: 99934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-42G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-42G>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-130571923-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571923
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571923
    reference: chr 9
allele count: 1
allele frequency: 1.001381907031704e-5
allele num: 99862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-40G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-40G>C
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-130571937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571937
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571937
    reference: chr 9
allele count: 2
allele frequency: 1.985860672015251e-5
allele num: 100712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-26A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-26A>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-130571953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571953
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571953
    reference: chr 9
allele count: 11
allele frequency: 1.079532071916464e-4
allele num: 101896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-10C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-10C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20636
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38655
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-130571956-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571956
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571956
    reference: chr 9
allele count: 1
allele frequency: 9.789908562254029e-6
allele num: 102146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-7C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-7C>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1061-7C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-130571960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571960
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571960
    reference: chr 9
allele count: 1
allele frequency: 9.75781112780781e-6
allele num: 102482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.404-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.333-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.169-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.983-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.763-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.911-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.913-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.913-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1061-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.287-3C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1049-3C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1061-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

9-130571965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571965
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571965
    reference: chr 9
allele count: 1
allele frequency: 9.734065335046528e-6
allele num: 102732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.915C>T
  hgvsp: ENST00000373228.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.985C>T
  hgvsp: ENSP00000377309.2:p.Leu329Phe
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1051C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.406C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.335C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.289C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1063C>T
  hgvsp: ENSP00000362344.2:p.Leu355Phe
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.913C>T
  hgvsp: ENSP00000362322.3:p.Leu305Phe
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.171C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.915C>T
  hgvsp: ENST00000373245.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.765C>T
  hgvsp: ENST00000431857.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu355Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

9-130571969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571969
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571969
    reference: chr 9
allele count: 1
allele frequency: 9.722141204378852e-6
allele num: 102858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.175G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.339G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.917G>A
  hgvsp: ENSP00000362322.3:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.919G>A
  hgvsp: ENSP00000362342.1:p.Gly307Arg
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.919G>A
  hgvsp: ENSP00000362325.1:p.Gly307Arg
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.769G>A
  hgvsp: ENSP00000400007.1:p.Gly257Arg
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1067G>A
  hgvsp: ENSP00000362344.2:p.Arg356Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.989G>A
  hgvsp: ENSP00000377309.2:p.Arg330Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.410G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.293G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg356Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

9-130571973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571973
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571973
    reference: chr 9
allele count: 2
allele frequency: 1.943294661769564e-5
allele num: 102918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.921C>T
  hgvsp: ENST00000373225.3:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.993C>T
  hgvsp: ENST00000393706.2:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.923C>T
  hgvsp: ENSP00000362342.1:p.Thr308Ile
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.923C>T
  hgvsp: ENSP00000362325.1:p.Thr308Ile
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.179C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1059C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.343C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1071C>T
  hgvsp: ENST00000373247.2:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.414C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.773C>T
  hgvsp: ENSP00000400007.1:p.Thr258Ile
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.297C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr308Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-130571975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571975
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571975
    reference: chr 9
allele count: 1
allele frequency: 9.724599346506924e-6
allele num: 102832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.925C>T
  hgvsp: ENSP00000362325.1:p.Arg309Trp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.995C>T
  hgvsp: ENSP00000377309.2:p.Thr332Met
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1061C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.925C>T
  hgvsp: ENSP00000362342.1:p.Arg309Trp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.923C>T
  hgvsp: ENSP00000362322.3:p.Thr308Met
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.775C>T
  hgvsp: ENSP00000400007.1:p.Arg259Trp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.299C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.416C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.345C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1073C>T
  hgvsp: ENSP00000362344.2:p.Thr358Met
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.181C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr358Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

9-130571977-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571977
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571977
    reference: chr 9
allele count: 2
allele frequency: 1.943407960199005e-5
allele num: 102912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.347G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.925G>C
  hgvsp: ENSP00000362322.3:p.Glu309Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.927G>C
  hgvsp: ENST00000373228.1:c.927G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.927G>C
  hgvsp: ENST00000373245.1:c.927G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.997G>C
  hgvsp: ENSP00000377309.2:p.Glu333Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1063G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1075G>C
  hgvsp: ENSP00000362344.2:p.Glu359Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.301G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.777G>C
  hgvsp: ENST00000431857.1:c.777G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.183G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.418G>C
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu359Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-130571983-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571983
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571983
    reference: chr 9
allele count: 1
allele frequency: 9.754765202801569e-6
allele num: 102514
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1081C>G
  hgvsp: ENSP00000362344.2:p.Pro361Ala
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.783C>G
  hgvsp: ENST00000431857.1:c.783C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.189C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.307C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.933C>G
  hgvsp: ENST00000373228.1:c.933C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1003C>G
  hgvsp: ENSP00000377309.2:p.Pro335Ala
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.931C>G
  hgvsp: ENSP00000362322.3:p.Pro311Ala
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.424C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1069C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.353C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.933C>G
  hgvsp: ENST00000373245.1:c.933C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro361Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

9-130571985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130571985
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130571985
    reference: chr 9
allele count: 1
allele frequency: 9.756859071927565e-6
allele num: 102492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000400007
  ensembl transcript: ENST00000431857
  gene symbol: FPGS
  hgvsc: ENST00000431857.1:c.785G>A
  hgvsp: ENSP00000400007.1:p.Arg262Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.191G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.426G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.933G>A
  hgvsp: ENST00000373225.3:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1071G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.935G>A
  hgvsp: ENSP00000362325.1:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.355G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.309G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1005G>A
  hgvsp: ENST00000393706.2:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.935G>A
  hgvsp: ENSP00000362342.1:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1083G>A
  hgvsp: ENST00000373247.2:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg312Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-130572001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572001
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572001
    reference: chr 9
allele count: 3
allele frequency: 3.021756647864625e-5
allele num: 99280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.949C>T
  hgvsp: ENST00000373225.3:c.949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1087C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1021C>T
  hgvsp: ENST00000393706.2:c.1021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.951C>T
  hgvsp: ENST00000373228.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.371C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.207C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.951C>T
  hgvsp: ENST00000373245.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1099C>T
  hgvsp: ENST00000373247.2:c.1099C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.325C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.442C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu367Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-130572009-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572009
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572009
    reference: chr 9
allele count: 1
allele frequency: 1.026694045174538e-5
allele num: 97400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.450C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.333C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.959C>G
  hgvsp: ENSP00000362325.1:p.Ala320Gly
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1107C>G
  hgvsp: ENST00000373247.2:c.1107C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.379C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.957C>G
  hgvsp: ENST00000373225.3:c.957C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1029C>G
  hgvsp: ENST00000393706.2:c.1029C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.215C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.959C>G
  hgvsp: ENSP00000362342.1:p.Ala320Gly
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1095C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala320Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

9-130572009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572009
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572009
    reference: chr 9
allele count: 4
allele frequency: 4.106776180698152e-5
allele num: 97400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1107C>T
  hgvsp: ENST00000373247.2:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.959C>T
  hgvsp: ENSP00000362325.1:p.Ala320Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1095C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1029C>T
  hgvsp: ENST00000393706.2:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.215C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.959C>T
  hgvsp: ENSP00000362342.1:p.Ala320Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.450C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.333C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.957C>T
  hgvsp: ENST00000373225.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.379C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala320Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

9-130572012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572012
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572012
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 96758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.962G>A
  hgvsp: ENSP00000362325.1:p.Gly321Asp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.960G>A
  hgvsp: ENST00000373225.3:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.218G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1110G>A
  hgvsp: ENST00000373247.2:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1098G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1032G>A
  hgvsp: ENST00000393706.2:c.1032G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.453G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.962G>A
  hgvsp: ENSP00000362342.1:p.Gly321Asp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.336G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.382G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly321Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

9-130572016-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572016
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572016
    reference: chr 9
allele count: 2
allele frequency: 2.083289931459761e-5
allele num: 96002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1036C>G
  hgvsp: ENSP00000377309.2:p.Leu346Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.964C>G
  hgvsp: ENSP00000362322.3:p.Leu322Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.386C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.457C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.340C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.222C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.966C>G
  hgvsp: ENST00000373245.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1114C>G
  hgvsp: ENSP00000362344.2:p.Leu372Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.966C>G
  hgvsp: ENST00000373228.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1102C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu372Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

9-130572018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572018
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572018
    reference: chr 9
allele count: 7
allele frequency: 7.343992614041714e-5
allele num: 95316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.968C>T
  hgvsp: ENSP00000362325.1:p.Ser323Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.459C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1104C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.342C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.966C>T
  hgvsp: ENST00000373225.3:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1038C>T
  hgvsp: ENST00000393706.2:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.388C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.968C>T
  hgvsp: ENSP00000362342.1:p.Ser323Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.224C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1116C>T
  hgvsp: ENST00000373247.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4626
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser323Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

9-130572021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572021
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572021
    reference: chr 9
allele count: 1
allele frequency: 1.056256205505207e-5
allele num: 94674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1041C>T
  hgvsp: ENST00000393706.2:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1107C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.391C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1119C>T
  hgvsp: ENST00000373247.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.971C>T
  hgvsp: ENSP00000362342.1:p.Pro324Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.345C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.462C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.969C>T
  hgvsp: ENST00000373225.3:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.227C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.971C>T
  hgvsp: ENSP00000362325.1:p.Pro324Leu
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro324Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-130572040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572040
    reference: chr 9
allele count: 1
allele frequency: 1.213179987382928e-5
allele num: 82428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.988C>T
  hgvsp: ENSP00000362322.3:p.His330Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1060C>T
  hgvsp: ENSP00000377309.2:p.His354Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.990C>T
  hgvsp: ENST00000373245.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.481C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1126C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.246C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1138C>T
  hgvsp: ENSP00000362344.2:p.His380Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.990C>T
  hgvsp: ENST00000373228.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.410C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.364C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His380Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-130572046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572046
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572046
    reference: chr 9
allele count: 1389
allele frequency: 1.814500326583932e-2
allele num: 76550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.996G>A
  hgvsp: ENST00000373245.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.370G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.416G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.996G>A
  hgvsp: ENST00000373228.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1144G>A
  hgvsp: ENSP00000362344.2:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.252G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.994G>A
  hgvsp: ENSP00000362322.3:p.Ala332Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1066G>A
  hgvsp: ENSP00000377309.2:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.487G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1132G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 12194
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 16378
  bin: 1.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 2.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 2.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 24735
  bin: 2.25e1
  variant carriers: 6
hgvs: p.Ala382Thr
num of homozygotes: 15
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/9-130572047-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572047
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572047
    reference: chr 9
allele count: 1
allele frequency: 1.306438127090301e-5
allele num: 76544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.997C>A
  hgvsp: ENSP00000362342.1:p.Pro333Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1133C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.995C>A
  hgvsp: ENSP00000362322.3:p.Ala332Asp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.253C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.371C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1145C>A
  hgvsp: ENSP00000362344.2:p.Ala382Asp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.488C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.417C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1067C>A
  hgvsp: ENSP00000377309.2:p.Ala356Asp
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.997C>A
  hgvsp: ENSP00000362325.1:p.Pro333Thr
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala382Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

9-130572047-CCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572047
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572044
    reference: chr 9
allele count: 1
allele frequency: 1.306438127090301e-5
allele num: 76544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1072_1074delAGC
  hgvsp: ENSP00000377309.2:p.Ser358del
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1150_1152delAGC
  hgvsp: ENSP00000362344.2:p.Ser384del
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1002_1004delAGC
  hgvsp: ENSP00000362325.1:p.Ala335del
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.493_495delAGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.422_424delAGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.376_378delAGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1000_1002delAGC
  hgvsp: ENSP00000362322.3:p.Ser334del
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1138_1140delAGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1002_1004delAGC
  hgvsp: ENSP00000362342.1:p.Ala335del
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.258_260delAGC
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser384del
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CCAG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

9-130572048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572048
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572048
    reference: chr 9
allele count: 2
allele frequency: 2.70175343798125e-5
allele num: 74026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.489C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1146C>T
  hgvsp: ENST00000373247.2:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.372C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.254C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1068C>T
  hgvsp: ENST00000393706.2:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.998C>T
  hgvsp: ENSP00000362325.1:p.Pro333Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.418C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.998C>T
  hgvsp: ENSP00000362342.1:p.Pro333Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.996C>T
  hgvsp: ENST00000373225.3:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1134C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17870
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro333Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-130572050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572050
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572050
    reference: chr 9
allele count: 1
allele frequency: 1.353070116093416e-5
allele num: 73906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.420G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.998G>A
  hgvsp: ENSP00000362322.3:p.Ser333Asn
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1070G>A
  hgvsp: ENSP00000377309.2:p.Ser357Asn
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1000G>A
  hgvsp: ENSP00000362342.1:p.Ala334Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.256G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.374G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.491G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1136G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1000G>A
  hgvsp: ENSP00000362325.1:p.Ala334Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1148G>A
  hgvsp: ENSP00000362344.2:p.Ser383Asn
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser383Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-130572056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572056
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572056
    reference: chr 9
allele count: 11
allele frequency: 1.617028783112339e-4
allele num: 68026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.497C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1154C>T
  hgvsp: ENSP00000362344.2:p.Ala385Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.380C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.426C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1006C>T
  hgvsp: ENSP00000362342.1:p.Arg336Cys
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1076C>T
  hgvsp: ENSP00000377309.2:p.Ala359Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.262C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1004C>T
  hgvsp: ENSP00000362322.3:p.Ala335Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1006C>T
  hgvsp: ENSP00000362325.1:p.Arg336Cys
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1142C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19987
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30061
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala385Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-130572057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572057
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572057
    reference: chr 9
allele count: 1
allele frequency: 1.481657085284182e-5
allele num: 67492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1143G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.427G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.263G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1155G>A
  hgvsp: ENST00000373247.2:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.498G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.381G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1007G>A
  hgvsp: ENSP00000362325.1:p.Arg336His
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1007G>A
  hgvsp: ENSP00000362342.1:p.Arg336His
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1005G>A
  hgvsp: ENST00000373225.3:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1077G>A
  hgvsp: ENST00000393706.2:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30241
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg336His
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

9-130572060-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572060
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572060
    reference: chr 9
allele count: 6
allele frequency: 9.104980424292088e-5
allele num: 65898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1010G>C
  hgvsp: ENSP00000362325.1:p.Arg337Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1008G>C
  hgvsp: ENSP00000362322.3:p.Gln336His
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1010G>C
  hgvsp: ENSP00000362342.1:p.Arg337Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.266G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1080G>C
  hgvsp: ENSP00000377309.2:p.Gln360His
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.384G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1158G>C
  hgvsp: ENSP00000362344.2:p.Gln386His
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1146G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.501G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.430G>C
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20546
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln386His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-130572060-G-GGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572060
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572062
    reference: chr 9
allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
alternate allele: GGC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1011_1012dupGC
  hgvsp: ENSP00000362342.1:p.Pro338ArgfsTer48
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1011_1012dupGC
  hgvsp: ENSP00000362325.1:p.Pro338ArgfsTer?
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.502_503dupGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1147_1148dupGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1159_1160dupGC
  hgvsp: ENSP00000362344.2:p.Cys388ProfsTer39
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.385_386dupGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1009_1010dupGC
  hgvsp: ENSP00000362322.3:p.Cys338ProfsTer39
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1081_1082dupGC
  hgvsp: ENSP00000377309.2:p.Cys362ProfsTer39
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.431_432dupGC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.267_268dupGC
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20546
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8020
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys388ProfsTer39
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-130572071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572071
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572071
    reference: chr 9
allele count: 1
allele frequency: 1.962939698492462e-5
allele num: 50944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.277G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1169G>T
  hgvsp: ENSP00000362344.2:p.Arg390Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.512G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1157G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.395G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1021G>T
  hgvsp: ENSP00000362342.1:p.Ala341Ser
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1091G>T
  hgvsp: ENSP00000377309.2:p.Arg364Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1019G>T
  hgvsp: ENSP00000362322.3:p.Arg340Leu
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.441G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1021G>T
  hgvsp: ENSP00000362325.1:p.Ala341Ser
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg390Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

9-130572077-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572077
    reference: chr 9
allele count: 1
allele frequency: 2.302237775117414e-5
allele num: 43436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.401T>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1175T>A
  hgvsp: ENSP00000362344.2:p.Phe392Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1097T>A
  hgvsp: ENSP00000377309.2:p.Phe366Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1025T>A
  hgvsp: ENSP00000362322.3:p.Phe342Tyr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1027T>A
  hgvsp: ENSP00000362325.1:p.Ser343Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.283T>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.518T>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1027T>A
  hgvsp: ENSP00000362342.1:p.Ser343Thr
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1163T>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.447T>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe392Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

9-130572078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572078
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572078
    reference: chr 9
allele count: 2
allele frequency: 4.886868983042565e-5
allele num: 40926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.402C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1028C>T
  hgvsp: ENSP00000362325.1:p.Ser343Phe
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.284C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1026C>T
  hgvsp: ENST00000373225.3:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1164C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.448C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1176C>T
  hgvsp: ENST00000373247.2:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1098C>T
  hgvsp: ENST00000393706.2:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1028C>T
  hgvsp: ENSP00000362342.1:p.Ser343Phe
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.519C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16916
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser343Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

9-130572090-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572090
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572091
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 21368
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1177dupC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.461dupC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1189dupC
  hgvsp: ENSP00000362344.2:p.Gln397ProfsTer38
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1041dupC
  hgvsp: ENSP00000362342.1:p.Arg348GlnfsTer192
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.297dupC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1111dupC
  hgvsp: ENSP00000377309.2:p.Gln371ProfsTer38
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1041dupC
  hgvsp: ENSP00000362325.1:p.Arg348GlnfsTer40
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1039dupC
  hgvsp: ENSP00000362322.3:p.Gln347ProfsTer38
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.532dupC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.415dupC
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln397ProfsTer38
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-130572099-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572099
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572099
    reference: chr 9
allele count: 1
allele frequency: 1.216249087813184e-4
allele num: 8222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.469C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1119C>G
  hgvsp: ENST00000393706.2:c.1119C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.540C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1185C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.305C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1049C>G
  hgvsp: ENSP00000362325.1:p.Ala350Gly
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1049C>G
  hgvsp: ENSP00000362342.1:p.Ala350Gly
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1197C>G
  hgvsp: ENST00000373247.2:c.1197C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.423C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1047C>G
  hgvsp: ENST00000373225.3:c.1047C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala350Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

9-130572099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572099
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572099
    reference: chr 9
allele count: 2
allele frequency: 2.432498175626368e-4
allele num: 8222
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1197C>T
  hgvsp: ENST00000373247.2:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.469C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1185C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1047C>T
  hgvsp: ENST00000373225.3:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1119C>T
  hgvsp: ENST00000393706.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1049C>T
  hgvsp: ENSP00000362342.1:p.Ala350Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1049C>T
  hgvsp: ENSP00000362325.1:p.Ala350Val
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.423C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.305C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.540C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala350Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

9-130572115-TGAGGGGCAGGGCTGGGGGTGGGGCCGGGGCTGGCCCACGAGGAGGGGCGGGATCTTGGGGAAGGGCGGGGCGGGGTCGTGGGGAAGGGCGGGGGCGGGCCCATGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572009
    reference: chr 9
allele count: 5
allele frequency: 3.541076487252125e-3
allele num: 1412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14526
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: TGAGGGGCAGGGCTGGGGGTGGGGCCGGGGCTGGCCCACGAGGAGGGGCGGGATCTTGGGGAAGGGCGGGGCGGGGTCGTGGGGAAGGGCGGGGGCGGGCCCATGGG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS

9-130572118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572118
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572118
    reference: chr 9
allele count: 1
allele frequency: 9.861932938856016e-4
allele num: 1014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+5G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+5G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1211+5G>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

9-130572123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572123
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572123
    reference: chr 9
allele count: 333
allele frequency: 4.051094890510949e-1
allele num: 822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+10A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+10A>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 7.5e0
  variant carriers: 1656
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 2.5e0
  variant carriers: 1165
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 1.75e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.75e1
  variant carriers: 342
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 41
num of homozygotes: 59
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-130572136-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572136
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572136
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+23G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+23G>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

9-130572141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572141
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+28G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+28G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

9-130572141-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572141
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+28G>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+28G>C
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6891
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

9-130572144-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572144
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572144
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+31G>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+31G>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

9-130572149-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572149
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572149
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+36C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+36C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

9-130572151-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572151
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572151
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.483+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.437+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1211+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1199+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.319+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1063+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1133+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1063+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.554+38C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1061+38C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

9-130572259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572259
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572259
    reference: chr 9
allele count: 25
allele frequency: 5.395140057835901e-4
allele num: 46338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-51G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-51G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26395
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-130572260-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572260
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572260
    reference: chr 9
allele count: 4
allele frequency: 8.567511994516793e-5
allele num: 46688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-50C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-50C>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26384
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5870
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

9-130572262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572262
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572262
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 46888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-48G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-48G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26407
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-130572267-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572267
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572267
    reference: chr 9
allele count: 2
allele frequency: 4.191993292810731e-5
allele num: 47710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-43A>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-43A>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5000
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

9-130572269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572269
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572269
    reference: chr 9
allele count: 1
allele frequency: 2.105440458143844e-5
allele num: 47496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-41C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-41C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12657
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5998
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

9-130572270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572270
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572270
    reference: chr 9
allele count: 2
allele frequency: 4.139586869230451e-5
allele num: 48314
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-40G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-40G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27458
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21768
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-130572271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572271
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572271
    reference: chr 9
allele count: 1
allele frequency: 2.048928410441339e-5
allele num: 48806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-39G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-39G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

9-130572272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572272
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 49032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-38G>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-38G>A
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27765
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5608
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

9-130572272-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572271
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 49032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.1delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-37delC
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-37delC
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27765
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: GC
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

9-130572273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572273
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572273
    reference: chr 9
allele count: 2
allele frequency: 4.105764493348662e-5
allele num: 48712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.1C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-37C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-37C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

9-130572280-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572280
    reference: chr 9
allele count: 7
allele frequency: 1.320156910078455e-4
allele num: 53024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.8C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-30C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-30C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28860
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-130572283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572283
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572283
    reference: chr 9
allele count: 1
allele frequency: 1.822091031667942e-5
allele num: 54882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.11T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-27T>C
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-27T>C
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/9-130572296-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572296
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572296
    reference: chr 9
allele count: 6
allele frequency: 8.812643205452088e-5
allele num: 68084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.24C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-14C>A
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-14C>A
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18011
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-130572296-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572296
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572296
    reference: chr 9
allele count: 1
allele frequency: 1.468773867575348e-5
allele num: 68084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.24C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-14C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-14C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-130572298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572298
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572298
    reference: chr 9
allele count: 43
allele frequency: 6.065222297449785e-4
allele num: 70896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.26C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-12C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-12C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19606
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

9-130572305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572305
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572305
    reference: chr 9
allele count: 85
allele frequency: 1.082499172206515e-3
allele num: 78522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.33C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-5C>G
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-5C>G
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1212-5C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

9-130572305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 130572305
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 130572305
    reference: chr 9
allele count: 2
allele frequency: 2.547056875780036e-5
allele num: 78522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000489522
  gene symbol: FPGS
  hgvsc: ENST00000489522.1:n.555-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000473536
  gene symbol: FPGS
  hgvsc: ENST00000473536.1:n.320-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000475270
  gene symbol: FPGS
  hgvsc: ENST00000475270.1:n.33C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362325
  ensembl transcript: ENST00000373228
  gene symbol: FPGS
  hgvsc: ENST00000373228.1:c.1064-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000377309
  ensembl transcript: ENST00000393706
  gene symbol: FPGS
  hgvsc: ENST00000393706.2:c.1134-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000460181
  gene symbol: FPGS
  hgvsc: ENST00000460181.1:n.1200-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362342
  ensembl transcript: ENST00000373245
  gene symbol: FPGS
  hgvsc: ENST00000373245.1:c.1064-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362322
  ensembl transcript: ENST00000373225
  gene symbol: FPGS
  hgvsc: ENST00000373225.3:c.1062-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000488506
  gene symbol: FPGS
  hgvsc: ENST00000488506.1:n.484-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl protein: ENSP00000362344
  ensembl transcript: ENST00000373247
  gene symbol: FPGS
  hgvsc: ENST00000373247.2:c.1212-5C>T
  variant of: http://identifiers.org/hgnc/3824
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136877
  ensembl transcript: ENST00000467826
  gene symbol: FPGS
  hgvsc: ENST00000467826.1:n.438-5C>T
  variant of: http://identifiers.org/hgnc/3824
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1212-5C>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1423
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 61

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 3.79746835443038e-2
allele num: 316
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 8.974358974358974e-2
allele num: 156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.6519e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.304e1

GenotypeQuality
all individuals: 2306
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4738
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.226828e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.452e0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 5.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
all individuals: 899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.782213509178399e-5
allele num: 56110
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 1.22967e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 3.403e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
all individuals: 569
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.782213509178399e-5
allele num: 56110
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 1.22967e6

QD
type: SiteQuality
SIO_000300: 1.09e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 3.403e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.781388057574462e-5
allele num: 56136
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 1.232063e6

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

QD
type: SiteQuality
SIO_000300: 9.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

GenotypeQuality
all individuals: 1207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 514
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56136
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.266123054114158e-5
allele num: 10792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.232063e6

QD
type: SiteQuality
SIO_000300: 9.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

GenotypeQuality
all individuals: 5286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 8.434547908232118e-5
allele num: 11856
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East Asian
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 1.22e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.779929514791214e-5
allele num: 56182
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South Asian
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FS
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.13e-2

ReadPosRankSum
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ClippingRankSum
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.429388221841052e-4
allele num: 6996
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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Other
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

African
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allele frequency: 2.844950213371266e-4
allele num: 7030
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56452
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.26e0

MQRankSum
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SIO_000300: 7.61e-1

ClippingRankSum
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SIO_000300: 1.76e-1

FS
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MQ
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SIO_000300: 5.928e1

DP
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ReadPosRankSum
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SIO_000300: -9.2e-2

VQSLOD
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InbreedingCoeff
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SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13022
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56754
num of homozygotes: 0

African
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allele frequency: 1.554990104608425e-3
allele num: 7074
num of homozygotes: 0

East Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

MQRankSum
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MQ
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele num: 13232
num of homozygotes: 0

African
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Latino
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQ
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SIO_000300: 5.915e1

BaseQRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

Latino
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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BaseQRankSum
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SIO_000300: 4.45e-1

MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8028
num of homozygotes: 0

South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 3.143e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.322769e6

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.755679623582289e-5
allele num: 56958
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.008e0

DP
type: SiteQuality
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

InbreedingCoeff
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SIO_000300: -6.7e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.755987918803119e-5
allele num: 56948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.414827391058291e-4
allele num: 7068
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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DP
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 5.73e-1

MQ
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SIO_000300: 5.88e1

QD
type: SiteQuality
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MQRankSum
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SIO_000300: -1.016e0

BaseQRankSum
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SIO_000300: -3.456e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7050
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5402
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.758087201125176e-5
allele num: 56880
num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: -7.2e-1

InbreedingCoeff
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ClippingRankSum
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FS
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SIO_000300: 2.897e0

QD
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SIO_000300: 1.28e1

ReadPosRankSum
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SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

BaseQRankSum
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SIO_000300: 1.28e0

DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.515062040845021e-5
allele num: 56898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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DP
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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SIO_000300: 1.359e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.766222756013989e-5
allele num: 56618
num of homozygotes: 0

Other
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allele num: 702
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6990
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 10818
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 56570
num of homozygotes: 0

East Asian
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South Asian
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Other
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European (Finnish)
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MQ
type: SiteQuality
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.89753320683112e-4
allele num: 10540
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.82942446306392e-5
allele num: 54662
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.865462821325971e-5
allele num: 53606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 1.423e0

DP
type: SiteQuality
SIO_000300: 1.236271e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
all individuals: 8194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
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variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.421262080727686e-4
allele num: 14072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.865462821325971e-5
allele num: 53606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.54320987654321e-3
allele num: 648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

FS
type: SiteQuality
SIO_000300: 1.423e0

DP
type: SiteQuality
SIO_000300: 1.236271e6

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

GenotypeQuality
all individuals: 245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

DP
type: SiteQuality
SIO_000300: 1.224473e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

QD
type: SiteQuality
SIO_000300: 4.33e0

MQ
type: SiteQuality
SIO_000300: 5.107e1

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.428775539362766e-4
allele num: 13998
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.209057e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 729
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
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GenotypeQuality
all individuals: 614
bin: 7.75e1
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GenotypeQuality
all individuals: 10102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32456
bin: 6.25e1
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GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.333536538901166e-4
allele num: 52492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

FS
type: SiteQuality
SIO_000300: 4.773e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 1.198046e6

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.73e-1

GenotypeQuality
all individuals: 4440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32033
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variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
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GenotypeQuality
all individuals: 788
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 7.5e0
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GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 10732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.219174126479931e-5
allele num: 13852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.304e0

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.844e1

DP
type: SiteQuality
SIO_000300: 1.186397e6

QD
type: SiteQuality
SIO_000300: 1.067e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
all individuals: 373
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 1

GenotypeQuality
all individuals: 1681
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4115
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GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 121
bin: 8.25e1
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GenotypeQuality
all individuals: 19526
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.202546143341703e-5
allele num: 45402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.5232e5

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.213e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.931e1

GenotypeQuality
all individuals: 1304
bin: 9.75e1
variant carriers: 1303

GenotypeQuality
all individuals: 1653
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 2055
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4895
bin: 7.5e0
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GenotypeQuality
all individuals: 574
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2080
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 605
bin: 1.75e1
variant carriers: 10

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 369
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 14194
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 940
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 443
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 307
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 7

African
type: Population
allele count: 24
allele frequency: 5.099872503187421e-3
allele num: 4706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1001
allele frequency: 2.371813098284523e-2
allele num: 42204
num of homozygotes: 10

South Asian
type: Population
allele count: 105
allele frequency: 8.643398090220612e-3
allele num: 12148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.915708812260536e-2
allele num: 522
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 6.570471527956712e-3
allele num: 7762
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 198
allele frequency: 6.073619631901841e-2
allele num: 3260
num of homozygotes: 3

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.944e0

QD
type: SiteQuality
SIO_000300: 1.579e1

DP
type: SiteQuality
SIO_000300: 8.57284e5

GenotypeQuality
all individuals: 4977
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 15557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.370791844476055e-5
allele num: 42180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

FS
type: SiteQuality
SIO_000300: 7.169e0

QD
type: SiteQuality
SIO_000300: 9.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 8.41025e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.671681711802073e-4
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 9.59e0

FS
type: SiteQuality
SIO_000300: 7.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

DP
type: SiteQuality
SIO_000300: 8.41025e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.907012120319937e-5
allele num: 40758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.18e0

DP
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SIO_000300: 7.973e5

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.458331284723929e-5
allele num: 40678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 7.95044e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.805e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.314e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
type: Population
allele count: 8
allele frequency: 1.981178801386825e-3
allele num: 4038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.339313364301351e-5
allele num: 37458
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.8999644001424e-5
allele num: 11236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.779e0

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 7.01781e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.923816852635629e-4
allele num: 5198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 6.99891e5

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.435e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.129085265656382e-5
allele num: 10954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36302
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.276161306789178e-3
allele num: 3918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 2.285e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.104e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.164502164502165e-3
allele num: 462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.285e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.104e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.547105561861521e-5
allele num: 28192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

DP
type: SiteQuality
SIO_000300: 5.19336e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.527e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.144905910635829e-5
allele num: 24126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.875e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 4.53144e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.015e1

VQSLOD
type: SiteQuality
SIO_000300: -1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.266211604095563e-4
allele num: 2344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.392515154177282e-5
allele num: 22766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

DP
type: SiteQuality
SIO_000300: 4.37688e5

FS
type: SiteQuality
SIO_000300: 1.695e0

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.265e1

DP
type: SiteQuality
SIO_000300: 2.9076e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.198768689533861e-4
allele num: 4548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.84842e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

QD
type: SiteQuality
SIO_000300: 1.532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.95e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1876
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.607717041800643e-3
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.5e-3
allele num: 400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.84842e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.09090909090909e-3
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.514657980456026e-3
allele num: 614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14
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East Asian
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allele frequency: 0.0e0
allele num: 32
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
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Latino
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allele num: 46
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.948e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 9.0123e4

FS
type: SiteQuality
SIO_000300: 3.7941e1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.388888888888889e-2
allele num: 72
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.09e-2

DP
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SIO_000300: 7.7302e4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.462e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 70

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 147

GenotypeQuality
all individuals: 33
bin: 6.75e1
variant carriers: 33

GenotypeQuality
all individuals: 726
bin: 1.25e1
variant carriers: 498

GenotypeQuality
all individuals: 35
bin: 7.75e1
variant carriers: 35

GenotypeQuality
all individuals: 6880
bin: 7.5e0
variant carriers: 517

GenotypeQuality
all individuals: 67
bin: 6.25e1
variant carriers: 64

GenotypeQuality
all individuals: 3530
bin: 2.5e0
variant carriers: 21

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 86

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 106

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 53

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 69

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 82

GenotypeQuality
all individuals: 28
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 21

East Asian
type: Population
allele count: 8
allele frequency: 5.714285714285714e-1
allele num: 14
num of homozygotes: 1

South Asian
type: Population
allele count: 163
allele frequency: 3.654708520179372e-1
allele num: 446
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.5e-1
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.333333333333333e-1
allele num: 6
num of homozygotes: 1

African
type: Population
allele count: 30
allele frequency: 4.838709677419355e-1
allele num: 62
num of homozygotes: 6

Latino
type: Population
allele count: 15
allele frequency: 5.357142857142857e-1
allele num: 28
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 114
allele frequency: 4.351145038167939e-1
allele num: 262
num of homozygotes: 19

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 2.41e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.7101e4

VQSLOD
type: SiteQuality
SIO_000300: 9.199999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.412e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7714
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.76e-2

QD
type: SiteQuality
SIO_000300: 2.982e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.3005e1

VQSLOD
type: SiteQuality
SIO_000300: -6.289e-1

DP
type: SiteQuality
SIO_000300: 3.8779e4

GenotypeQuality
all individuals: 1434
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6891
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 2.748e1

DP
type: SiteQuality
SIO_000300: 3.6293e4

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1434
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 3.6293e4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.748e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 334
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6328
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 3.6025e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 1456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.671e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.76e-2

DP
type: SiteQuality
SIO_000300: 3.7509e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5867
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 3.8407e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.66e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.152e-1

FS
type: SiteQuality
SIO_000300: 8.038e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

GenotypeQuality
all individuals: 6043
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5716
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9984
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4257
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 633
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 996
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 9.75e1
variant carriers: 27

Latino
type: Population
allele count: 1
allele frequency: 3.094059405940594e-4
allele num: 3232
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.248088360237893e-4
allele num: 4708
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 6.289308176100629e-3
allele num: 318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.924465240641711e-4
allele num: 23936
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.302344219595271e-3
allele num: 9982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.66623e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 3412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8709
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4247
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.063725490196078e-4
allele num: 3264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3080
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.337135614702154e-4
allele num: 4734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.652e1

DP
type: SiteQuality
SIO_000300: 6.68524e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6030
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

DP
type: SiteQuality
SIO_000300: 6.74211e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.076239702794379e-5
allele num: 24764
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.81e0

VQSLOD
type: SiteQuality
SIO_000300: -3.928e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.87355e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.918666931164451e-5
allele num: 10082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 6.95344e5

QD
type: SiteQuality
SIO_000300: 6.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6192
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.973615195104506e-5
allele num: 25166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.873617693522907e-5
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 6.97e0

VQSLOD
type: SiteQuality
SIO_000300: -7.735e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

FS
type: SiteQuality
SIO_000300: 2.551e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.01872e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.031694433157253e-4
allele num: 4922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.677e0

DP
type: SiteQuality
SIO_000300: 7.05379e5

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.08294e5

MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.877116975187081e-5
allele num: 25390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.255e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

DP
type: SiteQuality
SIO_000300: 7.14066e5

QD
type: SiteQuality
SIO_000300: 7.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1424
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.50518932073581e-4
allele num: 27942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 7.76863e5

QD
type: SiteQuality
SIO_000300: 1.036e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.428625306430322e-5
allele num: 10606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29052
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.378e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.692e-1

DP
type: SiteQuality
SIO_000300: 7.9592e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 22403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 655
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.185302252074279e-3
allele num: 5062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.35729e5

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
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SIO_000300: -2.384e0

QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

FS
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InbreedingCoeff
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SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 9.35729e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11678
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.652346331791143e-4
allele num: 6052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
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African
type: Population
allele count: 42
allele frequency: 6.581009088060169e-3
allele num: 6382
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeDepth
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.620858555519616e-5
allele num: 43282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.210180623973728e-5
allele num: 12180
num of homozygotes: 0

East Asian
type: Population
allele count: 81
allele frequency: 1.326129666011788e-2
allele num: 6108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
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Other
type: Population
allele count: 1
allele frequency: 1.811594202898551e-3
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 1.514e0

InbreedingCoeff
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SIO_000300: 7.1e-3