6-25862246-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862246
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862246
    reference: chr 6
allele count: 1
allele frequency: 1.326435866825839e-5
allele num: 75390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.388T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+215T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+215T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+215T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.315T>C
  hgvsp: ENST00000397060.4:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+215T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+215T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+215T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11296
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr105Tyr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-25862251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862251
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862251
    reference: chr 6
allele count: 1
allele frequency: 1.390279168056946e-5
allele num: 71928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+210G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.310G>A
  hgvsp: ENSP00000380250.4:p.Val104Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+210G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+210G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.383G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+210G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+210G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+210G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val104Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-25862257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862257
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862257
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 67644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+204G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.377G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+204G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.304G>A
  hgvsp: ENSP00000380250.4:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+204G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+204G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+204G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+204G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21593
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala102Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-25862261-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862261
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862261
    reference: chr 6
allele count: 1
allele frequency: 1.608389358896001e-5
allele num: 62174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.377-4T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+200T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+200T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+200T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.304-4T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+200T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+200T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+200T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17841
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6976
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30224
  bin: 2.25e1
  variant carriers: 0
hgvs: c.304-4T>C
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-25862281-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862281
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862281
    reference: chr 6
allele count: 1
allele frequency: 2.036411029202134e-5
allele num: 49106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+180T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+180T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+180T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+180T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.304-24T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+180T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.377-24T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+180T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-25862292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862292
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862292
    reference: chr 6
allele count: 1
allele frequency: 2.31000231000231e-5
allele num: 43290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+169G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+169G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.304-35G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+169G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+169G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.377-35G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+169G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+169G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-25862301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862301
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862301
    reference: chr 6
allele count: 11
allele frequency: 2.75330396475771e-4
allele num: 39952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+160C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+160C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.377-44C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.304-44C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+160C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+160C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+160C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+160C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25379
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

6-25862410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862410
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862410
    reference: chr 6
allele count: 1
allele frequency: 9.419921249458354e-6
allele num: 106158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+51C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+51C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6005
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7355
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-25862411-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862411
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862411
    reference: chr 6
allele count: 2
allele frequency: 1.87955792797534e-5
allele num: 106408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+50G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+50G>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

6-25862432-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862431
    reference: chr 6
allele count: 2
allele frequency: 1.813466804490144e-5
allele num: 110286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+28delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303+28delC
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

6-25862436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862436
    reference: chr 6
allele count: 1
allele frequency: 8.920288303717977e-6
allele num: 112104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+25G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303+25G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-25862445-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862445
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862445
    reference: chr 6
allele count: 35
allele frequency: 3.015213907889523e-4
allele num: 116078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303+16T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303+16T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36509
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

6-25862461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862461
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862461
    reference: chr 6
allele count: 2
allele frequency: 1.662427476601333e-5
allele num: 120306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.303G>A
  hgvsp: ENST00000506105.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.303G>A
  hgvsp: ENST00000449356.2:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.376G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.408G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.303G>A
  hgvsp: ENST00000361703.6:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.405G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.303G>A
  hgvsp: ENST00000360657.3:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.303G>A
  hgvsp: ENST00000397060.4:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: c.303G>A
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-25862466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862466
    reference: chr 6
allele count: 25618
allele frequency: 2.121608639480571e-1
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.371G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.400G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.298G>A
  hgvsp: ENSP00000424729.1:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.298G>A
  hgvsp: ENSP00000415622.2:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.298G>A
  hgvsp: ENSP00000353873.3:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.298G>A
  hgvsp: ENSP00000380250.4:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.298G>A
  hgvsp: ENSP00000355307.6:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.403G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 1906
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 4.75e1
  variant carriers: 2875
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 6.75e1
  variant carriers: 884
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.25e1
  variant carriers: 2424
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 6.25e1
  variant carriers: 1307
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.25e1
  variant carriers: 1725
genotype depth: GenotypeDepth
  all individuals: 24005
  bin: 2.25e1
  variant carriers: 404
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 2.75e1
  variant carriers: 880
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 2492
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 2565
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 4.25e1
  variant carriers: 2910
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 591
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 24151
  bin: 6.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 6.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 21
hgvs: p.Ala100Thr
num of homozygotes: 2782
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-25862467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862467
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862467
    reference: chr 6
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.297T>C
  hgvsp: ENST00000361703.6:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.297T>C
  hgvsp: ENST00000360657.3:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.370T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.297T>C
  hgvsp: ENST00000506105.1:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.399T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.297T>C
  hgvsp: ENST00000397060.4:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.297T>C
  hgvsp: ENST00000449356.2:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.402T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24831
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro99Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

6-25862474-C-CTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862474
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862477
    reference: chr 6
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: CTCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.287_289dupAGA
  hgvsp: ENSP00000415622.2:p.Lys96dup
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.287_289dupAGA
  hgvsp: ENSP00000355307.6:p.Lys96dup
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.287_289dupAGA
  hgvsp: ENSP00000353873.3:p.Lys96dup
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.392_394dupAGA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.287_289dupAGA
  hgvsp: ENSP00000380250.4:p.Lys96dup
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.287_289dupAGA
  hgvsp: ENSP00000424729.1:p.Lys96dup
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.389_391dupAGA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.360_362dupAGA
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys96dup
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

6-25862476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862476
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862476
    reference: chr 6
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.288G>A
  hgvsp: ENST00000449356.2:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.361G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.288G>A
  hgvsp: ENST00000360657.3:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.288G>A
  hgvsp: ENST00000506105.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.393G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.390G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.288G>A
  hgvsp: ENST00000361703.6:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.288G>A
  hgvsp: ENST00000397060.4:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11109
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6642
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys96Lys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

6-25862482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862482
    reference: chr 6
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.282C>T
  hgvsp: ENST00000449356.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.355C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.282C>T
  hgvsp: ENST00000506105.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.282C>T
  hgvsp: ENST00000397060.4:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.387C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.282C>T
  hgvsp: ENST00000360657.3:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.384C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.282C>T
  hgvsp: ENST00000361703.6:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala94Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-25862490-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862490
    reference: chr 6
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.379A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.274A>G
  hgvsp: ENSP00000415622.2:p.Ser92Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.274A>G
  hgvsp: ENSP00000380250.4:p.Ser92Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.376A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.274A>G
  hgvsp: ENSP00000353873.3:p.Ser92Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.274A>G
  hgvsp: ENSP00000355307.6:p.Ser92Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.274A>G
  hgvsp: ENSP00000424729.1:p.Ser92Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.347A>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser92Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-25862491-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862491
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862491
    reference: chr 6
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.273A>G
  hgvsp: ENST00000361703.6:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.273A>G
  hgvsp: ENST00000397060.4:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.273A>G
  hgvsp: ENST00000360657.3:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.273A>G
  hgvsp: ENST00000506105.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.346A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.378A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.273A>G
  hgvsp: ENST00000449356.2:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.375A>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu91Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

6-25862504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862504
    reference: chr 6
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.260C>T
  hgvsp: ENSP00000353873.3:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.260C>T
  hgvsp: ENSP00000415622.2:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.333C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.365C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.362C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.260C>T
  hgvsp: ENSP00000424729.1:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.260C>T
  hgvsp: ENSP00000355307.6:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.260C>T
  hgvsp: ENSP00000380250.4:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser87Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

6-25862505-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862505
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862505
    reference: chr 6
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.259T>C
  hgvsp: ENSP00000415622.2:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.259T>C
  hgvsp: ENSP00000353873.3:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.364T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.332T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.259T>C
  hgvsp: ENSP00000424729.1:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.259T>C
  hgvsp: ENSP00000355307.6:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.259T>C
  hgvsp: ENSP00000380250.4:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.361T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser87Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

6-25862508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862508
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862508
    reference: chr 6
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.256G>A
  hgvsp: ENSP00000353873.3:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.256G>A
  hgvsp: ENSP00000415622.2:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.361G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.329G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.256G>A
  hgvsp: ENSP00000424729.1:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.358G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.256G>A
  hgvsp: ENSP00000380250.4:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.256G>A
  hgvsp: ENSP00000355307.6:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11081
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp86Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-25862518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862518
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862518
    reference: chr 6
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.351G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.246G>A
  hgvsp: ENST00000360657.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.319G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.246G>A
  hgvsp: ENST00000397060.4:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.246G>A
  hgvsp: ENST00000449356.2:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.246G>A
  hgvsp: ENST00000361703.6:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.246G>A
  hgvsp: ENST00000506105.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.348G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6682
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val82Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-25862523-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862523
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862523
    reference: chr 6
allele count: 2
allele frequency: 1.649892756970797e-5
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.241G>C
  hgvsp: ENSP00000355307.6:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.241G>C
  hgvsp: ENSP00000424729.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.241G>C
  hgvsp: ENSP00000415622.2:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.346G>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.241G>C
  hgvsp: ENSP00000353873.3:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.241G>C
  hgvsp: ENSP00000380250.4:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.343G>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.314G>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu81Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-25862532-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862532
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862532
    reference: chr 6
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.232G>T
  hgvsp: ENSP00000353873.3:p.Asp78Tyr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.337G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.232G>T
  hgvsp: ENSP00000355307.6:p.Asp78Tyr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.232G>T
  hgvsp: ENSP00000415622.2:p.Asp78Tyr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.232G>T
  hgvsp: ENSP00000424729.1:p.Asp78Tyr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.305G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.232G>T
  hgvsp: ENSP00000380250.4:p.Asp78Tyr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.334G>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp78Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

6-25862541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862541
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862541
    reference: chr 6
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.223C>T
  hgvsp: ENSP00000353873.3:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.328C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.296C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.223C>T
  hgvsp: ENSP00000415622.2:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.223C>T
  hgvsp: ENSP00000355307.6:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.223C>T
  hgvsp: ENSP00000424729.1:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.223C>T
  hgvsp: ENSP00000380250.4:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.325C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln75Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

6-25862542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862542
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862542
    reference: chr 6
allele count: 14
allele frequency: 1.154277422333619e-4
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.222C>T
  hgvsp: ENST00000397060.4:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.295C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.222C>T
  hgvsp: ENST00000360657.3:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.327C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.222C>T
  hgvsp: ENST00000449356.2:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.222C>T
  hgvsp: ENST00000361703.6:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.222C>T
  hgvsp: ENST00000506105.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.324C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11092
  bin: 9.75e1
  variant carriers: 14
hgvs: p.Ser74Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

6-25862549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862549
    reference: chr 6
allele count: 4
allele frequency: 3.29733740004946e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.215C>T
  hgvsp: ENSP00000355307.6:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.215C>T
  hgvsp: ENSP00000424729.1:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.320C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.215C>T
  hgvsp: ENSP00000380250.4:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.288C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.215C>T
  hgvsp: ENSP00000415622.2:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.215C>T
  hgvsp: ENSP00000353873.3:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.317C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31682
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro72Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

6-25862549-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862549
    reference: chr 6
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.215C>G
  hgvsp: ENSP00000415622.2:p.Pro72Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.215C>G
  hgvsp: ENSP00000353873.3:p.Pro72Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.215C>G
  hgvsp: ENSP00000380250.4:p.Pro72Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.215C>G
  hgvsp: ENSP00000424729.1:p.Pro72Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.317C>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.215C>G
  hgvsp: ENSP00000355307.6:p.Pro72Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.288C>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.320C>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro72Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

6-25862555-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862555
    reference: chr 6
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.209C>A
  hgvsp: ENSP00000424729.1:p.Thr70Lys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.209C>A
  hgvsp: ENSP00000353873.3:p.Thr70Lys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.209C>A
  hgvsp: ENSP00000355307.6:p.Thr70Lys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.311C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.209C>A
  hgvsp: ENSP00000380250.4:p.Thr70Lys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.282C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.209C>A
  hgvsp: ENSP00000415622.2:p.Thr70Lys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.314C>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr70Lys
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

6-25862557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862557
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862557
    reference: chr 6
allele count: 4
allele frequency: 3.296848213108268e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.207C>T
  hgvsp: ENST00000506105.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.207C>T
  hgvsp: ENST00000361703.6:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.207C>T
  hgvsp: ENST00000449356.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.280C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.207C>T
  hgvsp: ENST00000360657.3:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.207C>T
  hgvsp: ENST00000397060.4:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.312C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.309C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser69Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-25862558-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862558
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862558
    reference: chr 6
allele count: 4
allele frequency: 3.297119965709952e-5
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.279G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.206G>T
  hgvsp: ENSP00000353873.3:p.Ser69Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.206G>T
  hgvsp: ENSP00000355307.6:p.Ser69Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.308G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.206G>T
  hgvsp: ENSP00000424729.1:p.Ser69Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.311G>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.206G>T
  hgvsp: ENSP00000380250.4:p.Ser69Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.206G>T
  hgvsp: ENSP00000415622.2:p.Ser69Ile
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31705
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser69Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-25862564-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862564
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862564
    reference: chr 6
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.200T>G
  hgvsp: ENSP00000424729.1:p.Val67Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.273T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.200T>G
  hgvsp: ENSP00000380250.4:p.Val67Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.302T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.200T>G
  hgvsp: ENSP00000353873.3:p.Val67Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.200T>G
  hgvsp: ENSP00000415622.2:p.Val67Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.200T>G
  hgvsp: ENSP00000355307.6:p.Val67Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.305T>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val67Gly
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

6-25862582-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862582
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862582
    reference: chr 6
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.182T>C
  hgvsp: ENSP00000353873.3:p.Ile61Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.182T>C
  hgvsp: ENSP00000355307.6:p.Ile61Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.182T>C
  hgvsp: ENSP00000380250.4:p.Ile61Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.287T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.182T>C
  hgvsp: ENSP00000424729.1:p.Ile61Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.182T>C
  hgvsp: ENSP00000415622.2:p.Ile61Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.284T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.255T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile61Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-25862589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862589
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862589
    reference: chr 6
allele count: 11
allele frequency: 9.063643255001483e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.175A>G
  hgvsp: ENSP00000424729.1:p.Met59Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.248A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.280A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.277A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.175A>G
  hgvsp: ENSP00000353873.3:p.Met59Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.175A>G
  hgvsp: ENSP00000415622.2:p.Met59Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.175A>G
  hgvsp: ENSP00000355307.6:p.Met59Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.175A>G
  hgvsp: ENSP00000380250.4:p.Met59Val
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met59Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ

6-25862600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862600
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862600
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.164A>G
  hgvsp: ENSP00000353873.3:p.Gln55Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.164A>G
  hgvsp: ENSP00000380250.4:p.Gln55Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.269A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.164A>G
  hgvsp: ENSP00000415622.2:p.Gln55Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.164A>G
  hgvsp: ENSP00000355307.6:p.Gln55Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.266A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.164A>G
  hgvsp: ENSP00000424729.1:p.Gln55Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.237A>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11081
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln55Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-25862606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862606
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862606
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.158T>C
  hgvsp: ENSP00000355307.6:p.Ile53Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.263T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.158T>C
  hgvsp: ENSP00000424729.1:p.Ile53Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.231T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.158T>C
  hgvsp: ENSP00000415622.2:p.Ile53Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.260T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.158T>C
  hgvsp: ENSP00000353873.3:p.Ile53Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.158T>C
  hgvsp: ENSP00000380250.4:p.Ile53Thr
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile53Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-25862607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862607
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862607
    reference: chr 6
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.157A>G
  hgvsp: ENSP00000355307.6:p.Ile53Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.157A>G
  hgvsp: ENSP00000415622.2:p.Ile53Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.157A>G
  hgvsp: ENSP00000353873.3:p.Ile53Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.259A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.157A>G
  hgvsp: ENSP00000424729.1:p.Ile53Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.262A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.157A>G
  hgvsp: ENSP00000380250.4:p.Ile53Val
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.230A>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile53Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

6-25862608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862608
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862608
    reference: chr 6
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.156G>A
  hgvsp: ENST00000506105.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.156G>A
  hgvsp: ENST00000449356.2:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.156G>A
  hgvsp: ENST00000360657.3:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.229G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.156G>A
  hgvsp: ENST00000361703.6:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.156G>A
  hgvsp: ENST00000397060.4:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.261G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.258G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr52Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

6-25862609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862609
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862609
    reference: chr 6
allele count: 5
allele frequency: 4.119566292060772e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.257C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.155C>T
  hgvsp: ENSP00000353873.3:p.Thr52Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.155C>T
  hgvsp: ENSP00000415622.2:p.Thr52Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.228C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.260C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.155C>T
  hgvsp: ENSP00000424729.1:p.Thr52Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.155C>T
  hgvsp: ENSP00000380250.4:p.Thr52Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.155C>T
  hgvsp: ENSP00000355307.6:p.Thr52Met
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr52Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS

6-25862634-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862634
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862634
    reference: chr 6
allele count: 10
allele frequency: 8.239811473113494e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.130G>A
  hgvsp: ENSP00000380250.4:p.Val44Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.130G>A
  hgvsp: ENSP00000424729.1:p.Val44Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.235G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.130G>A
  hgvsp: ENSP00000415622.2:p.Val44Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.130G>A
  hgvsp: ENSP00000353873.3:p.Val44Ile
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.232G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.203G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.130G>A
  hgvsp: ENSP00000355307.6:p.Val44Ile
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11086
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val44Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

6-25862634-CGAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862634
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862630
    reference: chr 6
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.231_234delCCTC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.126_129delCCTC
  hgvsp: ENSP00000415622.2:p.Leu43SerfsTer10
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.126_129delCCTC
  hgvsp: ENSP00000353873.3:p.Leu43SerfsTer10
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.126_129delCCTC
  hgvsp: ENSP00000380250.4:p.Leu43SerfsTer10
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.199_202delCCTC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.126_129delCCTC
  hgvsp: ENSP00000355307.6:p.Leu43SerfsTer10
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.228_231delCCTC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.126_129delCCTC
  hgvsp: ENSP00000424729.1:p.Leu43SerfsTer10
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu43SerfsTer10
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: CGAGG
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

6-25862638-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862638
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862638
    reference: chr 6
allele count: 49
allele frequency: 4.037507621825613e-4
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.126C>G
  hgvsp: ENST00000449356.2:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.126C>G
  hgvsp: ENST00000506105.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.228C>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.231C>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.199C>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.126C>G
  hgvsp: ENST00000360657.3:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.126C>G
  hgvsp: ENST00000361703.6:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.126C>G
  hgvsp: ENST00000397060.4:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11116
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala42Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-25862640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862640
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862640
    reference: chr 6
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.124G>A
  hgvsp: ENSP00000415622.2:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.124G>A
  hgvsp: ENSP00000353873.3:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.197G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.124G>A
  hgvsp: ENSP00000380250.4:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.229G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.124G>A
  hgvsp: ENSP00000424729.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.124G>A
  hgvsp: ENSP00000355307.6:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.226G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11076
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala42Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-25862651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862651
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862651
    reference: chr 6
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.113G>A
  hgvsp: ENSP00000380250.4:p.Arg38His
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.113G>A
  hgvsp: ENSP00000355307.6:p.Arg38His
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.186G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.113G>A
  hgvsp: ENSP00000424729.1:p.Arg38His
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.113G>A
  hgvsp: ENSP00000415622.2:p.Arg38His
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.113G>A
  hgvsp: ENSP00000353873.3:p.Arg38His
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.218G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.215G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg38His
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

6-25862652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862652
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862652
    reference: chr 6
allele count: 69
allele frequency: 5.68631329113924e-4
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.112C>T
  hgvsp: ENSP00000353873.3:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.112C>T
  hgvsp: ENSP00000380250.4:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.185C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.112C>T
  hgvsp: ENSP00000424729.1:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.112C>T
  hgvsp: ENSP00000415622.2:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.112C>T
  hgvsp: ENSP00000355307.6:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.217C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.214C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg38Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

6-25862667-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862667
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862667
    reference: chr 6
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.97A>G
  hgvsp: ENSP00000353873.3:p.Ser33Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.202A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.170A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.97A>G
  hgvsp: ENSP00000355307.6:p.Ser33Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.97A>G
  hgvsp: ENSP00000380250.4:p.Ser33Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.97A>G
  hgvsp: ENSP00000424729.1:p.Ser33Gly
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.199A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.97A>G
  hgvsp: ENSP00000415622.2:p.Ser33Gly
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser33Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

6-25862667-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862667
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862667
    reference: chr 6
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.97A>C
  hgvsp: ENSP00000353873.3:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.97A>C
  hgvsp: ENSP00000415622.2:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.97A>C
  hgvsp: ENSP00000380250.4:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.97A>C
  hgvsp: ENSP00000424729.1:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.97A>C
  hgvsp: ENSP00000355307.6:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.199A>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.202A>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.170A>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser33Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-25862671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862671
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862671
    reference: chr 6
allele count: 2
allele frequency: 1.649321304283287e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.198T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.93T>C
  hgvsp: ENST00000506105.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.93T>C
  hgvsp: ENST00000360657.3:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.166T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.93T>C
  hgvsp: ENST00000397060.4:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.195T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.93T>C
  hgvsp: ENST00000449356.2:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.93T>C
  hgvsp: ENST00000361703.6:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: c.93T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-25862684-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862684
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862684
    reference: chr 6
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-12T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-12T>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

6-25862688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862688
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862688
    reference: chr 6
allele count: 17
allele frequency: 1.404540797779173e-4
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-16G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-16G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-25862691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862691
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862691
    reference: chr 6
allele count: 3
allele frequency: 2.479543763947434e-5
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-19G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-19G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

6-25862700-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862700
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862701
    reference: chr 6
allele count: 4
allele frequency: 3.311148637462336e-5
allele num: 120804
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-29dupA
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-29dupA
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11066
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

6-25862713-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862713
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862713
    reference: chr 6
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-41C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-41C>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

6-25862721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25862721
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25862721
    reference: chr 6
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.165-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.197-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.92-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.92-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.194-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.92-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.92-49T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.92-49T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22342
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-25868478-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868478
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868478
    reference: chr 6
allele count: 1
allele frequency: 8.56956775100264e-6
allele num: 116692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+47C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+47C>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-25868479-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868479
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868479
    reference: chr 6
allele count: 2
allele frequency: 1.709810894915022e-5
allele num: 116972
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+46T>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+46T>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-25868480-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868480
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868480
    reference: chr 6
allele count: 1421
allele frequency: 1.212912697599781e-2
allele num: 117156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+45T>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+45T>G
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 1.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17646
  bin: 2.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 3.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 2.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.75e1
  variant carriers: 281
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 19755
  bin: 6.25e1
  variant carriers: 5
num of homozygotes: 64
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-25868502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868502
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868502
    reference: chr 6
allele count: 3
allele frequency: 2.522449803248915e-5
allele num: 118932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+23G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+23G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28850
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-25868504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868504
    reference: chr 6
allele count: 1
allele frequency: 8.390810384466932e-6
allele num: 119178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+21T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+21T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

6-25868513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868513
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868513
    reference: chr 6
allele count: 1
allele frequency: 8.3365290027844e-6
allele num: 119954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+12C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+12C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-25868514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868514
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868514
    reference: chr 6
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+11C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+11C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-25868519-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868519
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868519
    reference: chr 6
allele count: 2
allele frequency: 1.663727414900343e-5
allele num: 120212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.91+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.193+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.196+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.164+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.91+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.91+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.91+6T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.91+6T>C
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
hgvs: c.91+6T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

6-25868531-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868531
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868530
    reference: chr 6
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.84delC
  hgvsp: ENSP00000355307.6:p.Arg29GlyfsTer13
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.186delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.189delC
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.84delC
  hgvsp: ENSP00000415622.2:p.Arg29GlyfsTer13
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.84delC
  hgvsp: ENSP00000380250.4:p.Arg29GlyfsTer13
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.84delC
  hgvsp: ENSP00000424729.1:p.Arg29GlyfsTer13
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.84delC
  hgvsp: ENSP00000353873.3:p.Arg29GlyfsTer13
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.157delC
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg29GlyfsTer13
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

6-25868533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868533
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868533
    reference: chr 6
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.83C>T
  hgvsp: ENSP00000353873.3:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.83C>T
  hgvsp: ENSP00000424729.1:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.188C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.185C>T
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.83C>T
  hgvsp: ENSP00000415622.2:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.83C>T
  hgvsp: ENSP00000380250.4:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.83C>T
  hgvsp: ENSP00000355307.6:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.156C>T
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12471
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro28Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-25868534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868534
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868534
    reference: chr 6
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.155C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.82C>A
  hgvsp: ENSP00000355307.6:p.Pro28Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.82C>A
  hgvsp: ENSP00000353873.3:p.Pro28Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.82C>A
  hgvsp: ENSP00000424729.1:p.Pro28Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.184C>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.82C>A
  hgvsp: ENSP00000380250.4:p.Pro28Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.82C>A
  hgvsp: ENSP00000415622.2:p.Pro28Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.187C>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro28Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-25868536-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868536
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868536
    reference: chr 6
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.80T>C
  hgvsp: ENSP00000415622.2:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.80T>C
  hgvsp: ENSP00000424729.1:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.185T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.153T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.80T>C
  hgvsp: ENSP00000353873.3:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.182T>C
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.80T>C
  hgvsp: ENSP00000380250.4:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.80T>C
  hgvsp: ENSP00000355307.6:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile27Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-25868541-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868541
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868541
    reference: chr 6
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.75A>G
  hgvsp: ENST00000361703.6:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.75A>G
  hgvsp: ENST00000506105.1:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.180A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.75A>G
  hgvsp: ENST00000360657.3:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.75A>G
  hgvsp: ENST00000397060.4:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.177A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.148A>G
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.75A>G
  hgvsp: ENST00000449356.2:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr25Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

6-25868549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868549
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868549
    reference: chr 6
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.67G>A
  hgvsp: ENSP00000380250.4:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.67G>A
  hgvsp: ENSP00000424729.1:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.67G>A
  hgvsp: ENSP00000353873.3:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.67G>A
  hgvsp: ENSP00000415622.2:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.172G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.67G>A
  hgvsp: ENSP00000355307.6:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.140G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.169G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp23Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-25868552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25868552
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 25868552
    reference: chr 6
allele count: 2
allele frequency: 1.656534199148542e-5
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000509714
  gene symbol: SLC17A3
  hgvsc: ENST00000509714.1:n.166G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000355307
  ensembl transcript: ENST00000361703
  gene symbol: SLC17A3
  hgvsc: ENST00000361703.6:c.64G>A
  hgvsp: ENSP00000355307.6:p.Val22Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000380250
  ensembl transcript: ENST00000397060
  gene symbol: SLC17A3
  hgvsc: ENST00000397060.4:c.64G>A
  hgvsp: ENSP00000380250.4:p.Val22Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000415622
  ensembl transcript: ENST00000449356
  gene symbol: SLC17A3
  hgvsc: ENST00000449356.2:c.64G>A
  hgvsp: ENSP00000415622.2:p.Val22Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000424729
  ensembl transcript: ENST00000506105
  gene symbol: SLC17A3
  hgvsc: ENST00000506105.1:c.64G>A
  hgvsp: ENSP00000424729.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000308453
  gene symbol: SLC17A3
  hgvsc: ENST00000308453.5:n.137G>A
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124564
  ensembl protein: ENSP00000353873
  ensembl transcript: ENST00000360657
  gene symbol: SLC17A3
  hgvsc: ENST00000360657.3:c.64G>A
  hgvsp: ENSP00000353873.3:p.Val22Met
  variant of: http://identifiers.org/hgnc/10931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124564
  ensembl transcript: ENST00000503922
  gene symbol: SLC17A3
  hgvsc: ENST00000503922.1:n.169G>A
  variant of: http://identifiers.org/hgnc/10931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val22Met
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.405233788724264e-5
allele num: 41576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.551e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.86799e5

GenotypeQuality
all individuals: 9307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32588
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10954
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.926782273603083e-4
allele num: 5190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 9.48472e5

FS
type: SiteQuality
SIO_000300: 5.476e0

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
all individuals: 4867
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7578
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 9.02842e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.946896917545824e-5
allele num: 33934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

QD
type: SiteQuality
SIO_000300: 4.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.506e0

DP
type: SiteQuality
SIO_000300: 8.53178e5

GenotypeQuality
all individuals: 2826
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12821
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3029
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23892
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.787878787878788e-5
allele num: 26400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.37867e5

QD
type: SiteQuality
SIO_000300: 5.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.34852043212776e-4
allele num: 4258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3156
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.765e0

QD
type: SiteQuality
SIO_000300: 1.126e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.68e-1

DP
type: SiteQuality
SIO_000300: 6.97976e5

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6271
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.364737550471063e-4
allele num: 2972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.314060446780552e-3
allele num: 1522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.538071065989848e-4
allele num: 3940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.334285986472326e-4
allele num: 20994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

DP
type: SiteQuality
SIO_000300: 6.79943e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
all individuals: 5084
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4488
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.015434606011373e-4
allele num: 9848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.297616e6

MQRankSum
type: SiteQuality
SIO_000300: -1.747e0

VQSLOD
type: SiteQuality
SIO_000300: -1.182e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.093e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 6793
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5978
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7352
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.748007694421544e-4
allele num: 7278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

DP
type: SiteQuality
SIO_000300: 1.301418e6

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.676e0

QD
type: SiteQuality
SIO_000300: 1.516e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7405
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.93012931866435e-4
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 1.721e0

DP
type: SiteQuality
SIO_000300: 1.48459e6

QD
type: SiteQuality
SIO_000300: 1.402e1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7431
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63430738053213e-5
allele num: 61188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 1.524411e6

QD
type: SiteQuality
SIO_000300: 1.113e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7482
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 32
allele frequency: 3.179018478044904e-3
allele num: 10066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.744739249771272e-4
allele num: 10930
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

FS
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 1.587441e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 1.697e1

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7514
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.331002331002331e-4
allele num: 8580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 1.642348e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 4.996e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 21

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 59

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 12

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 45

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 227
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 94

GenotypeQuality
all individuals: 26785
bin: 9.75e1
variant carriers: 22160

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 25

GenotypeQuality
all individuals: 787
bin: 9.25e1
variant carriers: 118

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 16

European (Non-Finnish)
type: Population
allele count: 15124
allele frequency: 2.277093558974977e-1
allele num: 66418
num of homozygotes: 1673

East Asian
type: Population
allele count: 1292
allele frequency: 1.50197628458498e-1
allele num: 8602
num of homozygotes: 89

African
type: Population
allele count: 3085
allele frequency: 2.967487495190458e-1
allele num: 10396
num of homozygotes: 458

Latino
type: Population
allele count: 1498
allele frequency: 1.315650799227121e-1
allele num: 11386
num of homozygotes: 105

Other
type: Population
allele count: 222
allele frequency: 2.46119733924612e-1
allele num: 902
num of homozygotes: 26

South Asian
type: Population
allele count: 3023
allele frequency: 1.835904287622981e-1
allele num: 16466
num of homozygotes: 283

European (Finnish)
type: Population
allele count: 1374
allele frequency: 2.088780784432958e-1
allele num: 6578
num of homozygotes: 148

FS
type: SiteQuality
SIO_000300: 2.751e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.503e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.49e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

DP
type: SiteQuality
SIO_000300: 2.342786e6

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.31e0

VQSLOD
type: SiteQuality
SIO_000300: -2.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.693e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.082e0

DP
type: SiteQuality
SIO_000300: 1.916692e6

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 11108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.918756e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

MQ
type: SiteQuality
SIO_000300: 5.57e1

MQRankSum
type: SiteQuality
SIO_000300: -6.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 8.97e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -3.25e-2

QD
type: SiteQuality
SIO_000300: 1.633e1

DP
type: SiteQuality
SIO_000300: 1.919125e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.311e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

DP
type: SiteQuality
SIO_000300: 1.919717e6

VQSLOD
type: SiteQuality
SIO_000300: -2.851e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 2.596e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

DP
type: SiteQuality
SIO_000300: 1.920553e6

MQRankSum
type: SiteQuality
SIO_000300: -1.353e0

FS
type: SiteQuality
SIO_000300: 1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.622e0

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.920532e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.237e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 6.744e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

FS
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 1.92137e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

QD
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MQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.921422e6

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.500315022051544e-5
allele num: 66662
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999670036296008e-5
allele num: 66674
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.437e0

FS
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
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SIO_000300: -1.196e0

BaseQRankSum
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SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.922529e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.922737e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 3.984e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.017e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
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SIO_000300: -6.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.176e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 4.827e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e0

DP
type: SiteQuality
SIO_000300: 1.923115e6

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.28e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.098887589577524e-4
allele num: 66702
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.23e-1

DP
type: SiteQuality
SIO_000300: 1.923906e6

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.477e0

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.923922e6

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.139e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.4e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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South Asian
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allele num: 16506
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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European (Finnish)
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allele num: 6612
num of homozygotes: 0

InbreedingCoeff
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MQ
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66714
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East Asian
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South Asian
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Latino
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Other
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FS
type: SiteQuality
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DP
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
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Other
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East Asian
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allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQ
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 6682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e0

QD
type: SiteQuality
SIO_000300: 1.702e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.92403e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: -3.495e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.924434e6

QD
type: SiteQuality
SIO_000300: 1.563e1

FS
type: SiteQuality
SIO_000300: 1.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

GenotypeQuality
all individuals: 31774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11090
bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498576352465158e-4
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.925401e6

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.371e1

FS
type: SiteQuality
SIO_000300: 3.281e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.202e-1

DP
type: SiteQuality
SIO_000300: 1.924705e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.961e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

FS
type: SiteQuality
SIO_000300: 1.179e0

QD
type: SiteQuality
SIO_000300: 1.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.592e0

FS
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.08e1

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.92481e6

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.417e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 1.924768e6

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

DP
type: SiteQuality
SIO_000300: 1.924949e6

FS
type: SiteQuality
SIO_000300: 2.593e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
all individuals: 2569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994485073732166e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

DP
type: SiteQuality
SIO_000300: 1.924917e6

FS
type: SiteQuality
SIO_000300: 1.751e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.925717e6

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 1.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

QD
type: SiteQuality
SIO_000300: 1.248e1

DP
type: SiteQuality
SIO_000300: 1.925717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.689350249903883e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.144715544631617e-4
allele num: 66724
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.216e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e0

DP
type: SiteQuality
SIO_000300: 1.92882e6

QD
type: SiteQuality
SIO_000300: 1.102e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

FS
type: SiteQuality
SIO_000300: 5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 1.924679e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.16e0

GenotypeQuality
all individuals: 3208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 11075
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 6685
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1855
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variant carriers: 0

GenotypeQuality
all individuals: 31766
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.924385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.801e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 11121
bin: 9.75e1
variant carriers: 69

GenotypeQuality
all individuals: 1205
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2568
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variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 6.151480199923107e-3
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.312e0

DP
type: SiteQuality
SIO_000300: 1.930672e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3209
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variant carriers: 0

GenotypeQuality
all individuals: 11070
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

FS
type: SiteQuality
SIO_000300: 5.965e0

DP
type: SiteQuality
SIO_000300: 1.923669e6

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734003814808393e-4
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 5.965e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

QD
type: SiteQuality
SIO_000300: 1.357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.923669e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 1.923038e6

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1858
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1207
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GenotypeQuality
all individuals: 40
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e0

QD
type: SiteQuality
SIO_000300: 1.468e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.918016e6

FS
type: SiteQuality
SIO_000300: 6.389e0

VQSLOD
type: SiteQuality
SIO_000300: -8.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.352488578985333e-4
allele num: 66544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.211754013935171e-3
allele num: 6602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 1.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.916776e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.786e0

GenotypeQuality
all individuals: 1201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819946614899296e-4
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.913693e6

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

FS
type: SiteQuality
SIO_000300: 1.0467e1

VQSLOD
type: SiteQuality
SIO_000300: -1.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.103e0

QD
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29880
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.643603436266543e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.115e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.898685e6

VQSLOD
type: SiteQuality
SIO_000300: 5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 9.51e0

GenotypeQuality
all individuals: 1787
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1231
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.811e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.743e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.954e0

DP
type: SiteQuality
SIO_000300: 1.857246e6

GenotypeQuality
all individuals: 3091
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 120
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.073e0

QD
type: SiteQuality
SIO_000300: 9.19e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.844668e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555403471660549e-5
allele num: 64292
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 3.405e0

QD
type: SiteQuality
SIO_000300: 1.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.257e0

DP
type: SiteQuality
SIO_000300: 2.130578e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102121851346321e-5
allele num: 64472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.066e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.13479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1805
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GenotypeQuality
all individuals: 2105
bin: 4.25e1
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GenotypeQuality
all individuals: 2555
bin: 3.25e1
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GenotypeQuality
all individuals: 1079
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 1313

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3716
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GenotypeQuality
all individuals: 416
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variant carriers: 3

Latino
type: Population
allele count: 109
allele frequency: 9.95797551617029e-3
allele num: 10946
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 4.587155963302753e-3
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 107
allele frequency: 1.657732469866452e-3
allele num: 64546
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.30715862503942e-4
allele num: 6342
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.478052290717198e-3
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 1162
allele frequency: 1.140333660451423e-1
allele num: 10190
num of homozygotes: 62

South Asian
type: Population
allele count: 6
allele frequency: 3.768370807687476e-4
allele num: 15922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.147467e6

VQSLOD
type: SiteQuality
SIO_000300: 6.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.686e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 473
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
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GenotypeQuality
all individuals: 452
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 34405
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GenotypeQuality
all individuals: 1478
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 4599
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variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12475
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 1
allele frequency: 8.996041741633681e-5
allele num: 11116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525087692542321e-5
allele num: 65570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.221e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 2.253631e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.588e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
all individuals: 1487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12474
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521467912241731e-5
allele num: 65726
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.25839e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.66e0

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.881e0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 1126
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 12470
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.27543e6

FS
type: SiteQuality
SIO_000300: 7.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 2.276261e6

VQSLOD
type: SiteQuality
SIO_000300: -6.602e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 2.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12473
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variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019050206804939e-5
allele num: 66246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.118e0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

QD
type: SiteQuality
SIO_000300: 1.557e1

DP
type: SiteQuality
SIO_000300: 2.280565e6

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
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GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 12471
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GenotypeQuality
all individuals: 36899
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GenotypeQuality
all individuals: 4793
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 8.25e1
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GenotypeQuality
all individuals: 88
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.286167e6

FS
type: SiteQuality
SIO_000300: 1.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.586e0

FS
type: SiteQuality
SIO_000300: 1.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -3.191e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 2.287017e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 7.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.391e0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.595e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

DP
type: SiteQuality
SIO_000300: 2.287281e6

FS
type: SiteQuality
SIO_000300: 3.139e0

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.117e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.096e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

FS
type: SiteQuality
SIO_000300: 4.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.287629e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 12471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.288451e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.314e1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.819897689186806e-5
allele num: 11338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

DP
type: SiteQuality
SIO_000300: 2.289288e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

FS
type: SiteQuality
SIO_000300: 5.675e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 5.968e1