6-161529011-C-CGGGCGCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529011
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529019
    reference: chr 6
allele count: 2
allele frequency: 1.669895130585799e-5
allele num: 119768
alternate allele: CGGGCGCGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/6-161529017-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529017
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529018
    reference: chr 6
allele count: 2
allele frequency: 1.678077594307961e-5
allele num: 119184
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+16_4119+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+16_1304+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+16_*2306+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+16_4107+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+16_4119+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+16_633+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+16_3957+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+16_3969+17insA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+16_606+17insA
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

6-161529017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529017
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529017
    reference: chr 6
allele count: 2
allele frequency: 1.678077594307961e-5
allele num: 119184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+16C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+16C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-161529018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529018
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529018
    reference: chr 6
allele count: 1
allele frequency: 8.402090440101497e-6
allele num: 119018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+17C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+17C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

6-161529019-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529019
    reference: chr 6
allele count: 7
allele frequency: 5.886805146749643e-5
allele num: 118910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+18G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+18G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25558
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8313
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

6-161529019-G-GCCTGTAATCCCAGCACTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529037
    reference: chr 6
allele count: 2
allele frequency: 1.681944327642755e-5
allele num: 118910
alternate allele: GCCTGTAATCCCAGCACTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-161529022-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529022
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529024
    reference: chr 6
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+22_3957+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+22_4119+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+22_1304+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+22_606+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+22_4107+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+22_4119+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+22_633+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+22_*2306+23insAG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+22_3969+23insAG
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-161529022-G-GGAGGCCGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529022
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529030
    reference: chr 6
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: GGAGGCCGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-161529023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529023
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529023
    reference: chr 6
allele count: 8
allele frequency: 6.769678609508014e-5
allele num: 118174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+22G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+22G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23416
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-161529025-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529025
    reference: chr 6
allele count: 52
allele frequency: 4.401781028323768e-4
allele num: 118134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+24C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+24C>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23426
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-161529031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529031
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529031
    reference: chr 6
allele count: 1
allele frequency: 8.528348229514908e-6
allele num: 117256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+30G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+30G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-161529032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529032
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529032
    reference: chr 6
allele count: 2
allele frequency: 1.705640553309795e-5
allele num: 117258
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+31G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19137
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-161529039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529039
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529039
    reference: chr 6
allele count: 7
allele frequency: 6.069750099717323e-5
allele num: 115326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+38G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+38G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-161529042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529042
    reference: chr 6
allele count: 1
allele frequency: 8.693082045308344e-6
allele num: 115034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+41T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+41T>C
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15931
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-161529045-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529045
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529045
    reference: chr 6
allele count: 2
allele frequency: 1.752234098475556e-5
allele num: 114140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+44G>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+44G>C
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-161529047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529047
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529047
    reference: chr 6
allele count: 2
allele frequency: 1.757469244288225e-5
allele num: 113800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+46G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+46G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7073
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-161529053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529053
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529053
    reference: chr 6
allele count: 1
allele frequency: 8.907098957869422e-6
allele num: 112270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4119+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3957+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.633+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3969+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2306+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1304+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.606+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4119+52G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4107+52G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6761
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-161529724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529724
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529724
    reference: chr 6
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3958-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.634-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1305-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4108-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2307-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3970-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4120-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4120-51G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.607-51G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-161529733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529733
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529733
    reference: chr 6
allele count: 1
allele frequency: 8.299719469481931e-6
allele num: 120486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.634-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3970-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2307-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4120-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3958-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4120-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1305-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4108-42T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.607-42T>C
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

6-161529737-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529737
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529737
    reference: chr 6
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3958-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3970-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2307-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.607-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4108-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.634-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1305-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4120-38A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4120-38A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-161529737-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529737
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529737
    reference: chr 6
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4120-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3958-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3970-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.607-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1305-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.634-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4108-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4120-38A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2307-38A>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/6-161529739-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529739
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529739
    reference: chr 6
allele count: 22
allele frequency: 1.825847359160774e-4
allele num: 120492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1305-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2307-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.634-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4108-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3970-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.607-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4120-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4120-36C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3958-36C>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30254
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

6-161529779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529779
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529779
    reference: chr 6
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000544733
  gene symbol: MAP3K4
  hgvsc: ENST00000544733.1:n.638G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4112G>A
  hgvsp: ENSP00000355887.2:p.Arg1371Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4124G>A
  hgvsp: ENSP00000375986.4:p.Arg1375Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.611G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3962G>A
  hgvsp: ENSP00000297332.10:p.Arg1321Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2311G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1309G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3974G>A
  hgvsp: ENSP00000355886.2:p.Arg1325Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4124G>A
  hgvsp: ENSP00000445018.1:p.Arg1375Gln
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1375Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-161529787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529787
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529787
    reference: chr 6
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3982C>T
  hgvsp: ENSP00000355886.2:p.Pro1328Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3970C>T
  hgvsp: ENSP00000297332.10:p.Pro1324Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4132C>T
  hgvsp: ENSP00000445018.1:p.Pro1378Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4132C>T
  hgvsp: ENSP00000375986.4:p.Pro1378Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1317C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.619C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4120C>T
  hgvsp: ENSP00000355887.2:p.Pro1374Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2319C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Pro1378Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

6-161529789-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529789
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529789
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4134T>G
  hgvsp: ENST00000544041.1:c.4134T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3972T>G
  hgvsp: ENST00000348824.7:c.3972T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4134T>G
  hgvsp: ENST00000392142.4:c.4134T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.3984T>G
  hgvsp: ENST00000366919.2:c.3984T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.621T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4122T>G
  hgvsp: ENST00000366920.2:c.4122T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1319T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2321T>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1378Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-161529810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529810
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529810
    reference: chr 6
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3993G>A
  hgvsp: ENST00000348824.7:c.3993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.642G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4155G>A
  hgvsp: ENST00000392142.4:c.4155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2342G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4005G>A
  hgvsp: ENST00000366919.2:c.4005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4155G>A
  hgvsp: ENST00000544041.1:c.4155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1340G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4143G>A
  hgvsp: ENST00000366920.2:c.4143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys1385Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-161529815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529815
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529815
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4010C>T
  hgvsp: ENSP00000355886.2:p.Thr1337Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4160C>T
  hgvsp: ENSP00000445018.1:p.Thr1387Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2347C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4160C>T
  hgvsp: ENSP00000375986.4:p.Thr1387Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1345C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.3998C>T
  hgvsp: ENSP00000297332.10:p.Thr1333Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.647C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4148C>T
  hgvsp: ENSP00000355887.2:p.Thr1383Ile
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr1387Ile
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

6-161529817-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529817
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529817
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4162G>T
  hgvsp: ENSP00000375986.4:p.Ala1388Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2349G>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4000G>T
  hgvsp: ENSP00000297332.10:p.Ala1334Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4012G>T
  hgvsp: ENSP00000355886.2:p.Ala1338Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4150G>T
  hgvsp: ENSP00000355887.2:p.Ala1384Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.649G>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4162G>T
  hgvsp: ENSP00000445018.1:p.Ala1388Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1347G>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1388Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

6-161529819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529819
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529819
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4002A>G
  hgvsp: ENST00000348824.7:c.4002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4164A>G
  hgvsp: ENST00000392142.4:c.4164A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4014A>G
  hgvsp: ENST00000366919.2:c.4014A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1349A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.651A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4164A>G
  hgvsp: ENST00000544041.1:c.4164A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4152A>G
  hgvsp: ENST00000366920.2:c.4152A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2351A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1388Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

6-161529821-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529821
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529821
    reference: chr 6
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.653A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4016A>T
  hgvsp: ENSP00000355886.2:p.Asp1339Val
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4154A>T
  hgvsp: ENSP00000355887.2:p.Asp1385Val
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4166A>T
  hgvsp: ENSP00000375986.4:p.Asp1389Val
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4004A>T
  hgvsp: ENSP00000297332.10:p.Asp1335Val
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4166A>T
  hgvsp: ENSP00000445018.1:p.Asp1389Val
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1351A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2353A>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1389Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

6-161529826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529826
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529826
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.658T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1356T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4009T>C
  hgvsp: ENST00000348824.7:c.4009T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4171T>C
  hgvsp: ENST00000392142.4:c.4171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2358T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4171T>C
  hgvsp: ENST00000544041.1:c.4171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4159T>C
  hgvsp: ENST00000366920.2:c.4159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4021T>C
  hgvsp: ENST00000366919.2:c.4021T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu1391Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-161529835-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529835
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529835
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2367T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4180T>C
  hgvsp: ENSP00000445018.1:p.Phe1394Leu
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.667T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4180T>C
  hgvsp: ENSP00000375986.4:p.Phe1394Leu
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4030T>C
  hgvsp: ENSP00000355886.2:p.Phe1344Leu
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1365T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4168T>C
  hgvsp: ENSP00000355887.2:p.Phe1390Leu
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4018T>C
  hgvsp: ENSP00000297332.10:p.Phe1340Leu
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48679
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8306
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe1394Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-161529837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529837
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529837
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4182C>T
  hgvsp: ENST00000392142.4:c.4182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4032C>T
  hgvsp: ENST00000366919.2:c.4032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4182C>T
  hgvsp: ENST00000544041.1:c.4182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2369C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4020C>T
  hgvsp: ENST00000348824.7:c.4020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4170C>T
  hgvsp: ENST00000366920.2:c.4170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1367C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.669C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe1394Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

6-161529838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529838
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529838
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2370G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4171G>A
  hgvsp: ENSP00000355887.2:p.Glu1391Lys
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.670G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4183G>A
  hgvsp: ENSP00000375986.4:p.Glu1395Lys
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4033G>A
  hgvsp: ENSP00000355886.2:p.Glu1345Lys
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4183G>A
  hgvsp: ENSP00000445018.1:p.Glu1395Lys
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4021G>A
  hgvsp: ENSP00000297332.10:p.Glu1341Lys
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1368G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8306
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu1395Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

6-161529853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529853
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529853
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4036C>T
  hgvsp: ENSP00000297332.10:p.Pro1346Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4186C>T
  hgvsp: ENSP00000355887.2:p.Pro1396Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1383C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4198C>T
  hgvsp: ENSP00000445018.1:p.Pro1400Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4048C>T
  hgvsp: ENSP00000355886.2:p.Pro1350Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4198C>T
  hgvsp: ENSP00000375986.4:p.Pro1400Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2385C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.685C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1400Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

6-161529857-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529857
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529857
    reference: chr 6
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4202A>G
  hgvsp: ENSP00000445018.1:p.Asn1401Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1387A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4052A>G
  hgvsp: ENSP00000355886.2:p.Asn1351Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4202A>G
  hgvsp: ENSP00000375986.4:p.Asn1401Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.689A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4190A>G
  hgvsp: ENSP00000355887.2:p.Asn1397Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4040A>G
  hgvsp: ENSP00000297332.10:p.Asn1347Ser
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2389A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn1401Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

6-161529862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529862
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529862
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4195G>A
  hgvsp: ENSP00000355887.2:p.Val1399Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2394G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.694G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4057G>A
  hgvsp: ENSP00000355886.2:p.Val1353Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4207G>A
  hgvsp: ENSP00000445018.1:p.Val1403Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4207G>A
  hgvsp: ENSP00000375986.4:p.Val1403Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4045G>A
  hgvsp: ENSP00000297332.10:p.Val1349Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1392G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1403Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

6-161529866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529866
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529866
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2398G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.698G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1396G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4211G>A
  hgvsp: ENSP00000445018.1:p.Arg1404Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4211G>A
  hgvsp: ENSP00000375986.4:p.Arg1404Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4199G>A
  hgvsp: ENSP00000355887.2:p.Arg1400Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4061G>A
  hgvsp: ENSP00000355886.2:p.Arg1354Gln
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4049G>A
  hgvsp: ENSP00000297332.10:p.Arg1350Gln
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1404Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

6-161529877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529877
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529877
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4222G>A
  hgvsp: ENSP00000445018.1:p.Val1408Met
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2409G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.709G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4060G>A
  hgvsp: ENSP00000297332.10:p.Val1354Met
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4222G>A
  hgvsp: ENSP00000375986.4:p.Val1408Met
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4210G>A
  hgvsp: ENSP00000355887.2:p.Val1404Met
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4072G>A
  hgvsp: ENSP00000355886.2:p.Val1358Met
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1407G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1408Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

6-161529897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529897
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529897
    reference: chr 6
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+6C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.729C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8298
  bin: 6.75e1
  variant carriers: 0
hgvs: c.4236+6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-161529898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529898
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529898
    reference: chr 6
allele count: 252
allele frequency: 2.075953538182717e-3
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.730C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+7C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+7C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 9.75e1
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
hgvs: c.4236+7C>T
num of homozygotes: 2
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

6-161529899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529899
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529899
    reference: chr 6
allele count: 4
allele frequency: 3.295055768818887e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+8G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.731G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8330
  bin: 6.75e1
  variant carriers: 0
hgvs: c.4236+8G>A
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-161529902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529902
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529902
    reference: chr 6
allele count: 9
allele frequency: 7.41399762752076e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.734C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+11C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+11C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-161529914-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529914
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529914
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.4C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.746C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+23C>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+23C>G
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-161529914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529914
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529914
    reference: chr 6
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.4C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.746C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+23C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

6-161529916-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529916
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529916
    reference: chr 6
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.6T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+25T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.748T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+25T>G
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

6-161529922-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529922
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529922
    reference: chr 6
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.754G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4236+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.12G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+31G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+31G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8304
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48700
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

6-161529960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529960
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529960
    reference: chr 6
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+69C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4237-23C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+69C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+69C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.50C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+69C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+69C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000541901
  gene symbol: MAP3K4
  hgvsc: ENST00000541901.1:n.792C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+69C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8205
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

6-161529987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529987
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161529987
    reference: chr 6
allele count: 1
allele frequency: 8.731184297838158e-6
allele num: 114532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+96C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+96C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+96C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+96C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.77C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+96C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4241C>T
  hgvsp: ENSP00000445018.1:p.Thr1414Ile
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+96C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1414Ile
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-161530011-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530011
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530011
    reference: chr 6
allele count: 2
allele frequency: 2.150907683042244e-5
allele num: 92984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4265A>C
  hgvsp: ENSP00000445018.1:p.Glu1422Ala
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.101A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+120A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+120A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+120A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+120A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+120A>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+120A>C
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu1422Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

6-161530025-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530026
    reference: chr 6
allele count: 1
allele frequency: 1.305687575077036e-5
allele num: 76588
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+135dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+135dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+135dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+135dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+135dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4280dupA
  hgvsp: ENSP00000445018.1:p.Tyr1427Ter
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.116dupA
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+135dupA
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr1427Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

6-161530039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530039
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530039
    reference: chr 6
allele count: 1
allele frequency: 1.709109553922406e-5
allele num: 58510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+148C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+148C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+148C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.129C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+148C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4293C>T
  hgvsp: ENST00000544041.1:c.4293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+148C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+148C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1431Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

6-161530040-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530040
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530038
    reference: chr 6
allele count: 1
allele frequency: 1.739432944859975e-5
allele num: 57490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+155_4074+156delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+155_4224+156delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4300_4301delCT
  hgvsp: ENSP00000445018.1:p.Leu1434GlufsTer24
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+155_*2423+156delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.136_137delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+155_4236+156delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+155_1421+156delCT
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+155_4086+156delCT
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17544
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu1434GlufsTer24
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: TTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-161530041-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530041
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530041
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 56292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.131T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4295T>A
  hgvsp: ENSP00000445018.1:p.Phe1432Tyr
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+150T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+150T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+150T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+150T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+150T>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+150T>A
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21247
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe1432Tyr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-161530046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530046
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530046
    reference: chr 6
allele count: 2
allele frequency: 4.045471095109025e-5
allele num: 49438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+155C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+155C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+155C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.136C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+155C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4300C>T
  hgvsp: ENST00000544041.1:c.4300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+155C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+155C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21310
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1434Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-161530079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530079
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530079
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 19078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+188T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+188T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+188T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4327+6T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.163+6T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+188T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+188T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+188T>C
  variant of: http://identifiers.org/hgnc/6856
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10906
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
hgvs: c.4327+6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

6-161530085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530085
    reference: chr 6
allele count: 1
allele frequency: 5.907372400756144e-5
allele num: 16928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+194A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4327+12A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+194A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+194A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+194A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+194A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.163+12A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+194A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7038
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

6-161530097-A-AGGTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530097
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530102
    reference: chr 6
allele count: 1
allele frequency: 6.875687568756875e-5
allele num: 14544
alternate allele: AGGTTG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+206_*2423+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.163+24_163+25insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+206_4086+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+206_4074+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+206_4236+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+206_4224+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+206_1421+207insGGTTG
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4327+24_4327+25insGGTTG
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-161530102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530102
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530102
    reference: chr 6
allele count: 1
allele frequency: 7.161271841879118e-5
allele num: 13964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+211G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.163+29G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+211G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+211G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+211G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+211G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4327+29G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+211G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33372
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-161530109-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530109
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530109
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 13548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4327+36T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4236+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4224+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4086+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1421+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4074+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2423+218T>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.163+36T>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6817
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

6-161530752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530752
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530752
    reference: chr 6
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-35C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-35C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26555
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

6-161530753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530753
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530753
    reference: chr 6
allele count: 2
allele frequency: 1.6632569898375e-5
allele num: 120246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-34G>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-34G>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

6-161530755-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530755
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530755
    reference: chr 6
allele count: 1
allele frequency: 8.311170212765958e-6
allele num: 120320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-32A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-32A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

6-161530760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530760
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530760
    reference: chr 6
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-27C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-27C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

6-161530761-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530761
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530761
    reference: chr 6
allele count: 1
allele frequency: 8.300821781356355e-6
allele num: 120470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-26A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-26A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

6-161530763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530763
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530763
    reference: chr 6
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-24A>G
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-24A>G
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26593
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

6-161530763-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530763
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530763
    reference: chr 6
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-24A>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-24A>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

6-161530775-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530775
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530775
    reference: chr 6
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-12T>C
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-12T>C
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11492
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

6-161530777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530777
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530777
    reference: chr 6
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-10C>T
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-10C>T
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-161530780-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530780
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 161530780
    reference: chr 6
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000445018
  ensembl transcript: ENST00000544041
  gene symbol: MAP3K4
  hgvsc: ENST00000544041.1:c.4328-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355887
  ensembl transcript: ENST00000366920
  gene symbol: MAP3K4
  hgvsc: ENST00000366920.2:c.4225-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000536852
  gene symbol: MAP3K4
  hgvsc: ENST00000536852.1:n.1422-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000355886
  ensembl transcript: ENST00000366919
  gene symbol: MAP3K4
  hgvsc: ENST00000366919.2:c.4087-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000375986
  ensembl transcript: ENST00000392142
  gene symbol: MAP3K4
  hgvsc: ENST00000392142.4:c.4237-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000297332
  ensembl transcript: ENST00000348824
  gene symbol: MAP3K4
  hgvsc: ENST00000348824.7:c.4075-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000085511
  ensembl protein: ENSP00000446303
  ensembl transcript: ENST00000490904
  gene symbol: MAP3K4
  hgvsc: ENST00000490904.2:c.*2424-7C>A
  variant of: http://identifiers.org/hgnc/6856
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000085511
  ensembl transcript: ENST00000539610
  gene symbol: MAP3K4
  hgvsc: ENST00000539610.1:n.164-7C>A
  variant of: http://identifiers.org/hgnc/6856
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.4237-7C>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

6-161530816-C-T
type: Variant
location: Region
allele count: 15
allele frequency: 1.235849522962084e-4
allele num: 121374
alternate allele: T
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Cys1422Cys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8949
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.039790862388668e-5
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.986e0

QD
type: SiteQuality
SIO_000300: 6.48e0

MQ
type: SiteQuality
SIO_000300: 5.155e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 6.147e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.686242e6

GenotypeQuality
all individuals: 1206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8485
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.054834275240568e-5
allele num: 65470
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.516e1

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

DP
type: SiteQuality
SIO_000300: 1.6486e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 2.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.054834275240568e-5
allele num: 65470
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.516e1

FS
type: SiteQuality
SIO_000300: 2.872e0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.6486e6

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529239050648397e-5
allele num: 65392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.642846e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.519e1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530784067599424e-5
allele num: 65326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.699136868064119e-4
allele num: 16220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.634708e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061568135198849e-5
allele num: 65326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.634708e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.042e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541829843658454e-5
allele num: 64858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 4.943e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.579423e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541829843658454e-5
allele num: 64858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.541212009123975e-5
allele num: 64884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.327933720786448e-4
allele num: 16174
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.577939e6

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: -9.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 52

GenotypeQuality
all individuals: 437
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.768033946251768e-4
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541544627716972e-5
allele num: 64870
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 4.828537642885298e-3
allele num: 10148
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.576028e6

BaseQRankSum
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele num: 16086
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Latino
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.107419712070875e-4
allele num: 63210
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East Asian
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Other
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African
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 63046
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African
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Other
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: 2.55e0

FS
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SIO_000300: 0.0e0

DP
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.201229272040464e-5
allele num: 62476
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Other
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Latino
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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MQRankSum
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VQSLOD
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QD
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DP
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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QD
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DP
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MQRankSum
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SIO_000300: -5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
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SIO_000300: 3.36e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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African
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allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
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Other
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: 3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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South Asian
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allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 22

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.925298421255295e-3
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.212e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.997720866070893e-5
allele num: 66692
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
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QD
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DP
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MQ
type: SiteQuality
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

Latino
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European (Non-Finnish)
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African
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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European (Finnish)
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MQ
type: SiteQuality
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MQRankSum
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DP
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
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FS
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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South Asian
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MQ
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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DP
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.863e0

ClippingRankSum
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SIO_000300: -9.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.483e0

MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.63328e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

DP
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SIO_000300: 1.633183e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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East Asian
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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allele num: 66740
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Latino
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East Asian
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South Asian
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
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SIO_000300: 1.47e0

DP
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
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SIO_000300: -1.36e-1

MQRankSum
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SIO_000300: 2.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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QD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
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MQ
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ClippingRankSum
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SIO_000300: 3.72e-1

MQRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -2.28e-1

VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -3.982e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
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MQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
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SIO_000300: -1.161e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.395e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.866389274156264e-2
allele num: 8652
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South Asian
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allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 1.101321585903084e-3
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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Other
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European (Non-Finnish)
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Latino
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African
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allele frequency: 8.648856428983279e-4
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66702
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European (Finnish)
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African
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Latino
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Other
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East Asian
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South Asian
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.628821e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 2.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 5.39e0

FS
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BaseQRankSum
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MQRankSum
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SIO_000300: 4.11e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.628557e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.831e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.4092e1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.628059e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.389e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 1.919e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 1.617243e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.866e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.664e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.255473539346929e-5
allele num: 15986
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62848
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.374e0

QD
type: SiteQuality
SIO_000300: 1.528e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.511613e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.970144513260283e-5
allele num: 50376
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.118743e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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allele num: 3680
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 29774
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African
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Other
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European (Finnish)
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East Asian
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Latino
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South Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29124
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
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QD
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SIO_000300: 1.126e1

BaseQRankSum
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SIO_000300: -1.589e0

DP
type: SiteQuality
SIO_000300: 6.71004e5

VQSLOD
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SIO_000300: 4.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele frequency: 1.851166234727879e-4
allele num: 10804
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25052
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 6.75e-1

InbreedingCoeff
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SIO_000300: -2.93e-2

DP
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SIO_000300: 6.21199e5

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.31e0

MQ
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VQSLOD
type: SiteQuality
SIO_000300: -3.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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DP
type: SiteQuality
SIO_000300: 3.66591e5

QD
type: SiteQuality
SIO_000300: 8.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.597444089456869e-4
allele num: 6260
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.52e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 3.42175e5

FS
type: SiteQuality
SIO_000300: 6.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.078137988362427e-4
allele num: 4812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 3.732e1

MQRankSum
type: SiteQuality
SIO_000300: -1.107e0

VQSLOD
type: SiteQuality
SIO_000300: -5.555e-1

DP
type: SiteQuality
SIO_000300: 2.98525e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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QD
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.29e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.728e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509889778046203e-5
allele num: 66230
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
SIO_000300: 2.086e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.210408644888833e-5
allele num: 16102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
allele num: 894
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Latino
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele num: 10290
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8608
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European (Non-Finnish)
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allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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SIO_000300: 1.4e-1

QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele num: 16198
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.284149e6

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.160670280926565e-5
allele num: 16232
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10324
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66484
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European (Finnish)
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allele num: 6614
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Other
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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