10-75671288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671288
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671288
    reference: chr 10
allele count: 1
allele frequency: 9.43930526713234e-6
allele num: 105940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.78C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-26C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-26C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000496926
  gene symbol: PLAU
  hgvsc: ENST00000496926.1:n.151C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-362C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*155G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*155G>A
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-75671289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671289
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671289
    reference: chr 10
allele count: 633
allele frequency: 5.950702239268994e-3
allele num: 106374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*154G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.79C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*154G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-25C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-25C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-361C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000496926
  gene symbol: PLAU
  hgvsc: ENST00000496926.1:n.152C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27792
  bin: 2.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 2
num of homozygotes: 4
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

10-75671294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671294
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671294
    reference: chr 10
allele count: 335
allele frequency: 3.098294550701047e-3
allele num: 108124
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*149T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-20A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-20A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.84A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-356A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000496926
  gene symbol: PLAU
  hgvsc: ENST00000496926.1:n.157A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*149T>C
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31438
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 9.75e1
  variant carriers: 328
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

10-75671295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671295
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671295
    reference: chr 10
allele count: 1
allele frequency: 9.231564565562572e-6
allele num: 108324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.85G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-19G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*148C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000496926
  gene symbol: PLAU
  hgvsc: ENST00000496926.1:n.158G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-19G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*148C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-355G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-19G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/10-75671296-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671296
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671296
    reference: chr 10
allele count: 334
allele frequency: 3.074204296522652e-3
allele num: 108646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-18C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.86C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-354C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000496926
  gene symbol: PLAU
  hgvsc: ENST00000496926.1:n.159C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-18C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*147G>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-18C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*147G>T
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31839
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6663
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

10-75671301-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671301
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671301
    reference: chr 10
allele count: 1
allele frequency: 9.064046552943095e-6
allele num: 110326
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-13C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-349C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*142G>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.91C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-13C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*142G>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-13C>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-75671305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671305
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671305
    reference: chr 10
allele count: 1
allele frequency: 8.9391068044481e-6
allele num: 111868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-345C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.95C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-9C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*138G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-9C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

10-75671312-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671312
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671312
    reference: chr 10
allele count: 1
allele frequency: 8.801112460615022e-6
allele num: 113622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.102C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-338C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*131G>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.-2C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.-2C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.-2C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*131G>C
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36899
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-75671314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671314
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671314
    reference: chr 10
allele count: 1
allele frequency: 8.769314414999035e-6
allele num: 114034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-336A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*129T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.104A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.1A>G
  hgvsp: ENSP00000361848.4:p.Met1?
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.1A>G
  hgvsp: ENSP00000474318.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.1A>G
  hgvsp: ENSP00000361850.3:p.Met1?
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*129T>C
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-75671317-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671317
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671317
    reference: chr 10
allele count: 1
allele frequency: 8.742022904100009e-6
allele num: 114390
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*126T>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-333A>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.4A>C
  hgvsp: ENST00000372762.4:c.4A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.107A>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.4A>C
  hgvsp: ENST00000481390.1:c.4A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*126T>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.4A>C
  hgvsp: ENST00000372764.3:c.4A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg2Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

10-75671329-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671329
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671329
    reference: chr 10
allele count: 1
allele frequency: 8.668816533166892e-6
allele num: 115356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*114C>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-321G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*114C>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.16G>T
  hgvsp: ENSP00000474318.1:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.16G>T
  hgvsp: ENSP00000361850.3:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.16G>T
  hgvsp: ENSP00000361848.4:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.119G>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala6Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-75671330-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671330
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671330
    reference: chr 10
allele count: 3
allele frequency: 2.599608325678931e-5
allele num: 115402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.120C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.17C>A
  hgvsp: ENSP00000361850.3:p.Ala6Glu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*113G>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.17C>A
  hgvsp: ENSP00000474318.1:p.Ala6Glu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*113G>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.17C>A
  hgvsp: ENSP00000361848.4:p.Ala6Glu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-320C>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46159
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala6Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-75671333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671333
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671333
    reference: chr 10
allele count: 1
allele frequency: 8.643490587238751e-6
allele num: 115694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-317G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.20G>A
  hgvsp: ENSP00000361850.3:p.Arg7His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.20G>A
  hgvsp: ENSP00000361848.4:p.Arg7His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.123G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.20G>A
  hgvsp: ENSP00000474318.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*110C>T
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg7His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

10-75671340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671340
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671340
    reference: chr 10
allele count: 2
allele frequency: 1.723009063027672e-5
allele num: 116076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.27T>C
  hgvsp: ENST00000481390.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.130T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.27T>C
  hgvsp: ENST00000372764.3:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-310T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.27T>C
  hgvsp: ENST00000372762.4:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*103A>G
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu9Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

10-75671347-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671347
    reference: chr 10
allele count: 2
allele frequency: 1.726996407847472e-5
allele num: 115808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.137G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-303G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*96C>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.34G>C
  hgvsp: ENSP00000361848.4:p.Val12Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.34G>C
  hgvsp: ENSP00000361850.3:p.Val12Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.34G>C
  hgvsp: ENSP00000474318.1:p.Val12Leu
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val12Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-75671355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671355
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671355
    reference: chr 10
allele count: 2
allele frequency: 1.737951650185092e-5
allele num: 115078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.145C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.42C>T
  hgvsp: ENST00000372764.3:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*88G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-295C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.42C>T
  hgvsp: ENST00000372762.4:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.42C>T
  hgvsp: ENST00000481390.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45894
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val14Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

10-75671356-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671356
    reference: chr 10
allele count: 1
allele frequency: 8.694442512346109e-6
allele num: 115016
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.43G>C
  hgvsp: ENSP00000361850.3:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-294G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.146G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.43G>C
  hgvsp: ENSP00000474318.1:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.43G>C
  hgvsp: ENSP00000361848.4:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*87C>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*87C>G
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val15Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

10-75671356-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671356
    reference: chr 10
allele count: 1328
allele frequency: 1.154621965639563e-2
allele num: 115016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.43G>T
  hgvsp: ENSP00000474318.1:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.146G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*87C>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*87C>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.43G>T
  hgvsp: ENSP00000361850.3:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.43G>T
  hgvsp: ENSP00000361848.4:p.Val15Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-294G>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 34994
  bin: 2.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val15Leu
num of homozygotes: 15
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-75671362-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671362
    reference: chr 10
allele count: 1
allele frequency: 8.761324011284586e-6
allele num: 114138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.49G>C
  hgvsp: ENSP00000474318.1:p.Asp17His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.49G>C
  hgvsp: ENSP00000361850.3:p.Asp17His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-288G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.49G>C
  hgvsp: ENSP00000361848.4:p.Asp17His
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.152G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*81C>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*81C>G
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp17His
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

10-75671364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671364
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671364
    reference: chr 10
allele count: 3
allele frequency: 2.635833274759261e-5
allele num: 113816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.51C>T
  hgvsp: ENST00000372762.4:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-286C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.154C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.51C>T
  hgvsp: ENST00000372764.3:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.51C>T
  hgvsp: ENST00000481390.1:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*79G>A
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14752
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp17Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

10-75671373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671373
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671373
    reference: chr 10
allele count: 1
allele frequency: 8.967001434720229e-6
allele num: 111520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+3G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+3G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*70C>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-277G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+3G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+3G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*70C>G
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
hgvs: c.57+3G>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

10-75671374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671374
    reference: chr 10
allele count: 2
allele frequency: 1.798528803438787e-5
allele num: 111202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+4A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+4A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+4A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-276A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*69T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+4A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*69T>C
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 2.75e1
  variant carriers: 0
hgvs: c.57+4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

10-75671376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671376
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671376
    reference: chr 10
allele count: 2
allele frequency: 1.81626648261833e-5
allele num: 110116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+6T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+6T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-274T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+6T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+6T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*67A>G
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*67A>G
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39691
  bin: 6.25e1
  variant carriers: 0
hgvs: c.57+6T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-75671379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671379
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671379
    reference: chr 10
allele count: 2
allele frequency: 1.828788793182275e-5
allele num: 109362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+9G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+9G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*64C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-271G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+9G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+9G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

10-75671388-TTGAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671388
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671384
    reference: chr 10
allele count: 1
allele frequency: 9.435920662779067e-6
allele num: 105978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+22_57+25delCTGA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+22_57+25delCTGA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+22_160+25delCTGA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-258_-255delCTGA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*51_*54delGTCA
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+22_57+25delCTGA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*51_*54delGTCA
  variant of: http://identifiers.org/hgnc/31008
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: TTGAC
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-75671398-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671398
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671398
    reference: chr 10
allele count: 1362
allele frequency: 1.376675359330463e-2
allele num: 98934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+28C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+28C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+28C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-252C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+28C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*45G>T
  variant of: http://identifiers.org/hgnc/31008
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 19630
  bin: 2.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 11035
  bin: 1.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 2.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 3.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 27959
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 18520
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.75e1
  variant carriers: 10
num of homozygotes: 46
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

10-75671401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671401
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671401
    reference: chr 10
allele count: 2
allele frequency: 2.084723148765844e-5
allele num: 95936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+31C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*42G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*42G>A
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+31C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-249C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+31C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+31C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

10-75671405-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671405
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671405
    reference: chr 10
allele count: 980
allele frequency: 1.075457618190597e-2
allele num: 91124
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+35A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+35A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*38T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+35A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-245A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+35A>G
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 1.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25061
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 4
num of homozygotes: 34
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

10-75671416-T-TCAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671416
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671419
    reference: chr 10
allele count: 1
allele frequency: 1.235880070197988e-5
allele num: 80914
alternate allele: TCAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+49_57+51dupGCA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+49_57+51dupGCA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+49_160+51dupGCA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-231_-229dupGCA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*24_*26dupCTG
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*24_*26dupCTG
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+49_57+51dupGCA
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

10-75671421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671421
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671421
    reference: chr 10
allele count: 1
allele frequency: 1.325345915283889e-5
allele num: 75452
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+51A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+51A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+51A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-229A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*22T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+51A>G
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/10-75671423-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671423
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671424
    reference: chr 10
allele count: 1
allele frequency: 1.344266702513779e-5
allele num: 74390
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*19dupT
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+54dupA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-226dupA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+54dupA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*19dupT
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+54dupA
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+54dupA
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10529
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

10-75671424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671424
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671424
    reference: chr 10
allele count: 1
allele frequency: 1.452011035283868e-5
allele num: 68870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+54A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*19T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+54A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-226A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+54A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+54A>G
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4964
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-75671433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671433
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671433
    reference: chr 10
allele count: 2
allele frequency: 3.108679432976872e-5
allele num: 64336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+63G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+63G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-217G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+63G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+63G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/31008
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6718
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS

10-75671444-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671444
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671444
    reference: chr 10
allele count: 3
allele frequency: 6.011542160949022e-5
allele num: 49904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.455G>C
  hgvsp: ENSP00000409225.2:p.Ter152SerextTer9
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+74C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.455G>C
  hgvsp: ENSP00000386960.1:p.Ter152SerextTer9
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+74C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-206C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+74C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+74C>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter152SerextTer9
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/10-75671451-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671451
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671451
    reference: chr 10
allele count: 12
allele frequency: 2.79290601871247e-4
allele num: 42966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+81C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+81C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+81C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.448G>T
  hgvsp: ENSP00000386960.1:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+81C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.448G>T
  hgvsp: ENSP00000409225.2:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-199C>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22320
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16545
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala150Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

10-75671453-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671453
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671453
    reference: chr 10
allele count: 6
allele frequency: 1.529987760097919e-4
allele num: 39216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+83G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.446C>G
  hgvsp: ENSP00000386960.1:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.446C>G
  hgvsp: ENSP00000409225.2:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+83G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-197G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+83G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+83G>C
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18919
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Pro149Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

10-75671454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671454
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671454
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 39170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.445C>T
  hgvsp: ENSP00000386960.1:p.Pro149Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+84G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+84G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+84G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.445C>T
  hgvsp: ENSP00000409225.2:p.Pro149Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-196G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+84G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21550
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23815
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro149Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-75671460-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671460
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671459
    reference: chr 10
allele count: 5
allele frequency: 1.433239695006593e-4
allele num: 34886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+92delC
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.438delG
  hgvsp: ENSP00000409225.2:p.Arg147GlyfsTer56
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+92delC
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.438delG
  hgvsp: ENSP00000386960.1:p.Arg147GlyfsTer56
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-188delC
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+92delC
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+92delC
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20669
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21573
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg147GlyfsTer56
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: TC
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

10-75671463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671463
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671463
    reference: chr 10
allele count: 3
allele frequency: 9.071117561683599e-5
allele num: 33072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.436C>T
  hgvsp: ENSP00000386960.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-187G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+93G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+93G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.436C>T
  hgvsp: ENSP00000409225.2:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+93G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+93G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg146Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

10-75671473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671473
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671473
    reference: chr 10
allele count: 27
allele frequency: 9.803209643453633e-4
allele num: 27542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.426G>A
  hgvsp: ENST00000412307.2:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+103C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+103C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-177C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+103C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+103C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.426G>A
  hgvsp: ENST00000409178.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28404
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15294
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val142Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

10-75671474-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671474
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671474
    reference: chr 10
allele count: 1
allele frequency: 3.633456870866943e-5
allele num: 27522
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.425T>C
  hgvsp: ENSP00000386960.1:p.Val142Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+104A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+104A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.425T>C
  hgvsp: ENSP00000409225.2:p.Val142Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-176A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+104A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+104A>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val142Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-75671481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671481
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671481
    reference: chr 10
allele count: 17
allele frequency: 6.946714612618502e-4
allele num: 24472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+111G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+111G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.418C>T
  hgvsp: ENSP00000386960.1:p.Pro140Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.418C>T
  hgvsp: ENSP00000409225.2:p.Pro140Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+111G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+111G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-169G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31228
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10506
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6062
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Pro140Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

10-75671487-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671487
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671487
    reference: chr 10
allele count: 2
allele frequency: 8.736676568233443e-5
allele num: 22892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-163A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.412T>A
  hgvsp: ENSP00000386960.1:p.Ser138Thr
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+117A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+117A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.412T>A
  hgvsp: ENSP00000409225.2:p.Ser138Thr
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+117A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+117A>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32214
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser138Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

10-75671506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671506
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671506
    reference: chr 10
allele count: 1
allele frequency: 4.744733345985955e-5
allele num: 21076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.393T>C
  hgvsp: ENST00000412307.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+136A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+136A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+136A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.393T>C
  hgvsp: ENST00000409178.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-144A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+136A>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys131Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-75671522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671522
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671522
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20480
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.377C>T
  hgvsp: ENSP00000386960.1:p.Pro126Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+152G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+152G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-128G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.377C>T
  hgvsp: ENSP00000409225.2:p.Pro126Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+152G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+152G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31477
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28614
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro126Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

10-75671535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671535
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671535
    reference: chr 10
allele count: 1
allele frequency: 4.92174426616793e-5
allele num: 20318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.364G>A
  hgvsp: ENSP00000409225.2:p.Val122Met
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+165C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+165C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.364G>A
  hgvsp: ENSP00000386960.1:p.Val122Met
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+165C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+165C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24800
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val122Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

10-75671541-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671541
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671541
    reference: chr 10
allele count: 3
allele frequency: 1.477250344691747e-4
allele num: 20308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.358A>G
  hgvsp: ENSP00000409225.2:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+171T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+171T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+171T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-109T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+171T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.358A>G
  hgvsp: ENSP00000386960.1:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr120Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

10-75671550-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671550
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671550
    reference: chr 10
allele count: 2
allele frequency: 9.823182711198428e-5
allele num: 20360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+180G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.349C>G
  hgvsp: ENSP00000409225.2:p.Pro117Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.349C>G
  hgvsp: ENSP00000386960.1:p.Pro117Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+180G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+180G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+180G>C
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26109
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21833
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro117Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

10-75671563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671563
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671563
    reference: chr 10
allele count: 1
allele frequency: 4.876621476640983e-5
allele num: 20506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+193G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+193G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+193G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.336C>T
  hgvsp: ENST00000409178.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.336C>T
  hgvsp: ENST00000412307.2:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+193G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe112Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

10-75671571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671571
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671571
    reference: chr 10
allele count: 63
allele frequency: 3.040834057341442e-3
allele num: 20718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+201C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-79C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.328G>A
  hgvsp: ENSP00000409225.2:p.Gly110Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+201C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+201C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.328G>A
  hgvsp: ENSP00000386960.1:p.Gly110Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+201C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 26351
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Gly110Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-75671576-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671576
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671576
    reference: chr 10
allele count: 10
allele frequency: 4.772358499570488e-4
allele num: 20954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+206G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+206G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-74G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+206G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.323C>T
  hgvsp: ENSP00000409225.2:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+206G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.323C>T
  hgvsp: ENSP00000386960.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27689
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro108Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

10-75671582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671582
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671582
    reference: chr 10
allele count: 2
allele frequency: 9.456264775413712e-5
allele num: 21150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.57+212C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.57+212C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.57+212C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.317G>A
  hgvsp: ENSP00000409225.2:p.Gly106Asp
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-68C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.317G>A
  hgvsp: ENSP00000386960.1:p.Gly106Asp
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+212C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24891
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly106Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

10-75671597-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671597
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671597
    reference: chr 10
allele count: 4
allele frequency: 1.841790220093931e-4
allele num: 21718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.302T>A
  hgvsp: ENSP00000409225.2:p.Met101Lys
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-202A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+227A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-202A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-202A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.302T>A
  hgvsp: ENSP00000386960.1:p.Met101Lys
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met101Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

10-75671612-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671612
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671612
    reference: chr 10
allele count: 1
allele frequency: 4.506940688660537e-5
allele num: 22188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-187C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-187C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.287G>C
  hgvsp: ENSP00000409225.2:p.Ser96Thr
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+242C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-187C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.287G>C
  hgvsp: ENSP00000386960.1:p.Ser96Thr
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser96Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

10-75671615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671615
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671615
    reference: chr 10
allele count: 3
allele frequency: 1.345412144586958e-4
allele num: 22298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-184G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-184G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.284C>T
  hgvsp: ENSP00000386960.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.284C>T
  hgvsp: ENSP00000409225.2:p.Ala95Val
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+245G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-184G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala95Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

10-75671620-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671620
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671620
    reference: chr 10
allele count: 1
allele frequency: 4.441286196482501e-5
allele num: 22516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+250G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.279C>A
  hgvsp: ENST00000409178.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-179G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-179G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-179G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.279C>A
  hgvsp: ENST00000412307.2:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr93Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/10-75671658-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671658
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671658
    reference: chr 10
allele count: 3
allele frequency: 1.026272577996716e-4
allele num: 29232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.9C>A
  hgvsp: ENSP00000388474.1:p.Phe3Leu
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.241G>T
  hgvsp: ENSP00000409225.2:p.Glu81Ter
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-141C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-141C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.241G>T
  hgvsp: ENSP00000386960.1:p.Glu81Ter
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-141C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+288C>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu81Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

10-75671666-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671666
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671666
    reference: chr 10
allele count: 1
allele frequency: 3.0389594602808e-5
allele num: 32906
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.233C>G
  hgvsp: ENSP00000386960.1:p.Ser78Cys
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.233C>G
  hgvsp: ENSP00000409225.2:p.Ser78Cys
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+296G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-133G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.17G>C
  hgvsp: ENSP00000388474.1:p.Arg6Thr
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-133G>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-133G>C
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser78Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

10-75671671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671671
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671671
    reference: chr 10
allele count: 1
allele frequency: 2.777469170092212e-5
allele num: 36004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.22A>G
  hgvsp: ENSP00000388474.1:p.Arg8Gly
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.228T>C
  hgvsp: ENST00000412307.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-128A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-128A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-128A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.160+301A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.228T>C
  hgvsp: ENST00000409178.1:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg8Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

10-75671675-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671675
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671675
    reference: chr 10
allele count: 1
allele frequency: 2.573737581716168e-5
allele num: 38854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.224T>C
  hgvsp: ENSP00000409225.2:p.Val75Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-124A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-298A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-124A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-124A>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.26A>G
  hgvsp: ENSP00000388474.1:p.Tyr9Cys
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.224T>C
  hgvsp: ENSP00000386960.1:p.Val75Ala
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val75Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

10-75671675-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671675
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671675
    reference: chr 10
allele count: 4
allele frequency: 1.029495032686467e-4
allele num: 38854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.26A>T
  hgvsp: ENSP00000388474.1:p.Tyr9Phe
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-124A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-298A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.224T>A
  hgvsp: ENSP00000386960.1:p.Val75Glu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-124A>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.224T>A
  hgvsp: ENSP00000409225.2:p.Val75Glu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-124A>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34329
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Val75Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

10-75671676-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671676
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671676
    reference: chr 10
allele count: 2
allele frequency: 5.068423720223011e-5
allele num: 39460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-297C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.223G>C
  hgvsp: ENSP00000409225.2:p.Val75Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-123C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.223G>C
  hgvsp: ENSP00000386960.1:p.Val75Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-123C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.27C>G
  hgvsp: ENSP00000388474.1:p.Tyr9Ter
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-123C>G
  variant of: http://identifiers.org/hgnc/9052
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr9Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

10-75671685-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671685
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671685
    reference: chr 10
allele count: 5
allele frequency: 9.723464664929407e-5
allele num: 51422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.214A>G
  hgvsp: ENSP00000409225.2:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-288T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-114T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-114T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-114T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+2T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.214A>G
  hgvsp: ENSP00000386960.1:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/31008
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30987
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
hgvs: c.34+2T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-75671690-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671690
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671690
    reference: chr 10
allele count: 4
allele frequency: 6.714563889075404e-5
allele num: 59572
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.209G>T
  hgvsp: ENSP00000386960.1:p.Arg70Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-109C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+7C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.209G>T
  hgvsp: ENSP00000409225.2:p.Arg70Leu
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-109C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-109C>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-283C>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27995
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg70Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-75671690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671690
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671690
    reference: chr 10
allele count: 7
allele frequency: 1.175048680588196e-4
allele num: 59572
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.209G>A
  hgvsp: ENSP00000386960.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+7C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.209G>A
  hgvsp: ENSP00000409225.2:p.Arg70His
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-109C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-283C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-109C>T
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-109C>T
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28053
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg70His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

10-75671703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671703
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671703
    reference: chr 10
allele count: 153
allele frequency: 1.735914134652477e-3
allele num: 88138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-96G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-270G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+20G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.196C>T
  hgvsp: ENSP00000386960.1:p.Pro66Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.196C>T
  hgvsp: ENSP00000409225.2:p.Pro66Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-96G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-96G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27175
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.75e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro66Ser
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

10-75671705-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671705
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671706
    reference: chr 10
allele count: 1
allele frequency: 1.085116541516559e-5
allele num: 92156
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.193dupC
  hgvsp: ENSP00000386960.1:p.Leu65ProfsTer13
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-267dupG
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-93dupG
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-93dupG
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-93dupG
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.193dupC
  hgvsp: ENSP00000409225.2:p.Leu65ProfsTer13
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+23dupG
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu65ProfsTer13
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

10-75671716-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671716
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671716
    reference: chr 10
allele count: 3
allele frequency: 2.829761545427105e-5
allele num: 106016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-83T>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+33T>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-83T>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.183A>C
  hgvsp: ENST00000412307.2:c.183A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.183A>C
  hgvsp: ENST00000409178.1:c.183A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-257T>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-83T>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35789
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro61Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

10-75671718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671718
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671718
    reference: chr 10
allele count: 2
allele frequency: 1.848804747730592e-5
allele num: 108178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.181C>T
  hgvsp: ENSP00000386960.1:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-81G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.181C>T
  hgvsp: ENSP00000409225.2:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+35G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-81G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-81G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-255G>A
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36585
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro61Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-75671721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671721
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671721
    reference: chr 10
allele count: 1
allele frequency: 9.037832366285271e-6
allele num: 110646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.178A>G
  hgvsp: ENSP00000409225.2:p.Ile60Val
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+38T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-78T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-78T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.178A>G
  hgvsp: ENSP00000386960.1:p.Ile60Val
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-252T>C
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-78T>C
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile60Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

10-75671725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671725
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671725
    reference: chr 10
allele count: 3
allele frequency: 2.641682223239759e-5
allele num: 113564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-74G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-74G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-248G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-74G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.174C>T
  hgvsp: ENST00000412307.2:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+42G>A
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.174C>T
  hgvsp: ENST00000409178.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38678
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala58Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-75671728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75671728
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75671728
    reference: chr 10
allele count: 1
allele frequency: 8.666712889135408e-6
allele num: 115384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361850
  ensembl transcript: ENST00000372764
  gene symbol: PLAU
  hgvsc: ENST00000372764.3:c.58-71C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000409225
  ensembl transcript: ENST00000412307
  gene symbol: C10orf55
  hgvsc: ENST00000412307.2:c.171G>C
  hgvsp: ENST00000412307.2:c.171G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl transcript: ENST00000494287
  gene symbol: PLAU
  hgvsc: ENST00000494287.1:n.161-245C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000361848
  ensembl transcript: ENST00000372762
  gene symbol: PLAU
  hgvsc: ENST00000372762.4:c.58-71C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000222047
  ensembl protein: ENSP00000386960
  ensembl transcript: ENST00000409178
  gene symbol: C10orf55
  hgvsc: ENST00000409178.1:c.171G>C
  hgvsp: ENST00000409178.1:c.171G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000388474
  ensembl transcript: ENST00000446342
  gene symbol: PLAU
  hgvsc: ENST00000446342.1:c.34+45C>G
  variant of: http://identifiers.org/hgnc/9052
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122861
  ensembl protein: ENSP00000474318
  ensembl transcript: ENST00000481390
  gene symbol: PLAU
  hgvsc: ENST00000481390.1:c.58-71C>G
  variant of: http://identifiers.org/hgnc/9052
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39111
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu57Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 8021
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.697619936848538e-5
allele num: 58906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.232089e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 1.235e0

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

QD
type: SiteQuality
SIO_000300: 1.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2001
bin: 9.75e1
variant carriers: 612

GenotypeQuality
all individuals: 7770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33102
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3965
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2668
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 4

African
type: Population
allele count: 25
allele frequency: 2.822944896115628e-3
allele num: 8856
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 4.810583283223091e-3
allele num: 9978
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 528
allele frequency: 8.923139322652606e-3
allele num: 59172
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.021678040947411e-4
allele num: 4982
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.128205128205128e-3
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.704158145875937e-3
allele num: 14670
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.302e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.249609e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

GenotypeQuality
all individuals: 37249
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 441
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 505
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 6
allele frequency: 4.045853000674309e-4
allele num: 14830
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.452359750667854e-4
allele num: 8984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.531645569620253e-3
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 2.354788069073783e-3
allele num: 5096
num of homozygotes: 1

Latino
type: Population
allele count: 11
allele frequency: 1.07484854406879e-3
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 300
allele frequency: 4.99001996007984e-3
allele num: 60120
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.29254e6

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.379e1

FS
type: SiteQuality
SIO_000300: 2.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
all individuals: 6875
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.294249e6

QD
type: SiteQuality
SIO_000300: 1.126e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
all individuals: 662
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1691
bin: 9.75e1
variant carriers: 327

GenotypeQuality
all individuals: 515
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 37714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 308
allele frequency: 3.395810363836824e-2
allele num: 9070
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.525252525252525e-3
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.971167230065619e-5
allele num: 60348
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 2.03843913803145e-3
allele num: 10302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.304662e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

FS
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632173402102239e-5
allele num: 61268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.336834e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.098e0

FS
type: SiteQuality
SIO_000300: 7.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeQuality
all individuals: 5143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609735681401114e-5
allele num: 62122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

DP
type: SiteQuality
SIO_000300: 1.363201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586344744439862e-5
allele num: 63038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10878
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.305e1

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.392624e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580877703300873e-5
allele num: 63256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.398895e6

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 8.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.257e0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.471654154801968e-5
allele num: 15452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 6.56e0

QD
type: SiteQuality
SIO_000300: 5.75e0

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.405118e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564406620568818e-5
allele num: 63922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 5.64e0

FS
type: SiteQuality
SIO_000300: 7.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

DP
type: SiteQuality
SIO_000300: 1.422521e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
all individuals: 3314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.691898654989052e-5
allele num: 63940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

DP
type: SiteQuality
SIO_000300: 1.42486e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
all individuals: 3182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560598021161709e-5
allele num: 64078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.429818e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 3.372e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.827e0

GenotypeQuality
all individuals: 1394
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555790652809758e-5
allele num: 64276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.152e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.482e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

DP
type: SiteQuality
SIO_000300: 1.435141e6

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.281722635221738e-4
allele num: 15604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 4.573e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.434383e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566170712607674e-5
allele num: 63850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.0351966873706e-4
allele num: 9660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.425174e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 2.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567054251418184e-5
allele num: 63814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

FS
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
type: SiteQuality
SIO_000300: 1.438036e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 471
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44996
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 794
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2402
bin: 9.75e1
variant carriers: 1302

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 13
allele frequency: 1.536643026004728e-2
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 432
allele frequency: 2.787096774193549e-2
allele num: 15500
num of homozygotes: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.658031088082902e-3
allele num: 9650
num of homozygotes: 0

Latino
type: Population
allele count: 64
allele frequency: 5.817124159243773e-3
allele num: 11002
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 40
allele frequency: 6.93721817551162e-3
allele num: 5766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 763
allele frequency: 1.195662393832075e-2
allele num: 63814
num of homozygotes: 6

FS
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.438036e6

GenotypeQuality
all individuals: 45084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576044129235618e-5
allele num: 63450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

DP
type: SiteQuality
SIO_000300: 1.396004e6

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.741883476116714e-5
allele num: 63266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 5.859e0

DP
type: SiteQuality
SIO_000300: 1.390541e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 3932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15004
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.503896597605019e-5
allele num: 10522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 4.7e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 1.357574e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 3.292e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.912e0

GenotypeQuality
all individuals: 520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.231539828728389e-5
allele num: 61890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.35181e6

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.2605151613955e-5
allele num: 61340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.336503e6

MQ
type: SiteQuality
SIO_000300: 5.862e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

QD
type: SiteQuality
SIO_000300: 1.304e1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 1131
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 952
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.284072249589491e-5
allele num: 60900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.32788e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

FS
type: SiteQuality
SIO_000300: 9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.722e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.128e0

QD
type: SiteQuality
SIO_000300: 3.033e1

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.274859765425803e-4
allele num: 7844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.276252e6

MQRankSum
type: SiteQuality
SIO_000300: -2.27e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 5.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.541e0

QD
type: SiteQuality
SIO_000300: 1.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2894
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2147
bin: 9.75e1
variant carriers: 1254

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.387728984606384e-4
allele num: 54698
num of homozygotes: 0

African
type: Population
allele count: 840
allele frequency: 9.641873278236915e-2
allele num: 8712
num of homozygotes: 35

Latino
type: Population
allele count: 50
allele frequency: 5.674080798910576e-3
allele num: 8812
num of homozygotes: 0

South Asian
type: Population
allele count: 442
allele frequency: 3.157593941991713e-2
allele num: 13998
num of homozygotes: 11

Other
type: Population
allele count: 4
allele frequency: 5.6657223796034e-3
allele num: 706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.158894645941278e-4
allele num: 4632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.355748373101952e-4
allele num: 7376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.73e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.185865e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

GenotypeQuality
all individuals: 282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13698
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.403846153846154e-4
allele num: 8320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 1.12842e6

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

FS
type: SiteQuality
SIO_000300: 6.895e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeQuality
all individuals: 403
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2155
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 919

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20317
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 539
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 685
bin: 5.75e1
variant carriers: 3

Other
type: Population
allele count: 8
allele frequency: 1.219512195121951e-2
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 961
allele frequency: 7.172712345126138e-2
allele num: 13398
num of homozygotes: 34

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.967704636976197e-5
allele num: 50162
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.93513354857646e-4
allele num: 6814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.121638924455825e-4
allele num: 7810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.058207e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.58e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2192
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.256419513515953e-5
allele num: 44318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 9.18442e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.272e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
all individuals: 466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 10505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.25e1
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GenotypeQuality
all individuals: 2117
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.644195988161789e-4
allele num: 6082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 3.619e0

DP
type: SiteQuality
SIO_000300: 8.63735e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.472065658063878e-5
allele num: 40452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.53407e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.73e1

MQ
type: SiteQuality
SIO_000300: 6.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 590
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.685573101299817e-5
allele num: 37236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.11129e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 7820
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.802776275464215e-4
allele num: 11094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.842e1

DP
type: SiteQuality
SIO_000300: 7.70403e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 30567
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.168403501458941e-4
allele num: 4798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.313452617627568e-4
allele num: 3018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.296e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.186e0

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

DP
type: SiteQuality
SIO_000300: 6.8168e5

GenotypeQuality
all individuals: 745
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 1420
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26546
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.184713375796179e-3
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.354524110529167e-4
allele num: 22148
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.020408163265306e-3
allele num: 2940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 2.077562326869806e-3
allele num: 1444
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.081598667776853e-4
allele num: 9608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 6.32897e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2782
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 1

GenotypeQuality
all individuals: 887
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variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 1359
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variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.517623363544814e-4
allele num: 3972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.008233758409479e-4
allele num: 19918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.378378378378379e-3
allele num: 296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

DP
type: SiteQuality
SIO_000300: 6.08632e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 5.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18989
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2470
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variant carriers: 0

GenotypeQuality
all individuals: 871
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GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 638
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variant carriers: 1

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.07397e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 2.5e0
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GenotypeQuality
all individuals: 1584
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.787878787878788e-3
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.806684733514002e-3
allele num: 2214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.78909e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 2.5e0
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 635
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variant carriers: 3

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6097
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variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 23095
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.332814930015552e-3
allele num: 1286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.087e-1

FS
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.436e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

DP
type: SiteQuality
SIO_000300: 5.64554e5

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28742
bin: 7.5e0
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GenotypeQuality
all individuals: 6022
bin: 6.25e1
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GenotypeQuality
all individuals: 67
bin: 5.75e1
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GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 222
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variant carriers: 2

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 8.563899868247694e-3
allele num: 3036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

FS
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

DP
type: SiteQuality
SIO_000300: 5.08784e5

GenotypeQuality
all individuals: 1515
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 507
bin: 2.75e1
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GenotypeQuality
all individuals: 434
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GenotypeQuality
all individuals: 315
bin: 3.25e1
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GenotypeQuality
all individuals: 6090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
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GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.75e1
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GenotypeQuality
all individuals: 1321
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 2.966e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.523e0

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

DP
type: SiteQuality
SIO_000300: 5.07489e5

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1591
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 31058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 650
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 17
allele frequency: 6.33855331841909e-3
allele num: 2682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.76471e5

FS
type: SiteQuality
SIO_000300: 1.111e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.18e-2

QD
type: SiteQuality
SIO_000300: 1.398e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 2.002e0

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.619999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.457e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 4.55215e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.377410468319559e-3
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.02943e5

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.786e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

DP
type: SiteQuality
SIO_000300: 3.74228e5

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.013e0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262626262626263e-4
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.118e0

QD
type: SiteQuality
SIO_000300: 1.121e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.58105e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.017e0

FS
type: SiteQuality
SIO_000300: 9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.07e0

GenotypeQuality
all individuals: 238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.489183531053733e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 3.54724e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.480000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.482e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.554e1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.595588235294118e-4
allele num: 2176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261352169525732e-4
allele num: 7928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.846e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.862e0

DP
type: SiteQuality
SIO_000300: 3.46613e5

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4567
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21416
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.646840148698885e-4
allele num: 2152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.44902e5

VQSLOD
type: SiteQuality
SIO_000300: -2.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1682
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 21797
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 436
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1228
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 2.859778597785978e-2
allele num: 2168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 3.49932e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3647
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24085
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 355
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 2.272727272727273e-3
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 4.117108874656907e-3
allele num: 2186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.049999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

DP
type: SiteQuality
SIO_000300: 3.58763e5

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.522704339051463e-4
allele num: 7928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 3.66288e5

FS
type: SiteQuality
SIO_000300: 1.3665e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

VQSLOD
type: SiteQuality
SIO_000300: -3.883e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 6925
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.027652086475615e-4
allele num: 7956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.90188e5

VQSLOD
type: SiteQuality
SIO_000300: -1.889e0

FS
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 437
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.1001100110011e-4
allele num: 9090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.632e0

FS
type: SiteQuality
SIO_000300: 3.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

DP
type: SiteQuality
SIO_000300: 4.17942e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

QD
type: SiteQuality
SIO_000300: 3.228e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.756574004507889e-4
allele num: 7986
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

DP
type: SiteQuality
SIO_000300: 4.25797e5

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 1.877e0

QD
type: SiteQuality
SIO_000300: 1.089e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.397e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.809999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
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GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 31326
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GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.25e-4
allele num: 8000
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.610000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.373e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

QD
type: SiteQuality
SIO_000300: 1.227e1

DP
type: SiteQuality
SIO_000300: 4.38123e5

FS
type: SiteQuality
SIO_000300: 4.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 1

GenotypeQuality
all individuals: 8181
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.025991792065663e-3
allele num: 2924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.13129e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
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GenotypeQuality
all individuals: 661
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variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.116569897275569e-4
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

FS
type: SiteQuality
SIO_000300: 3.448e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.35e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.412e0

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 6.61438e5

GenotypeQuality
all individuals: 660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1379
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.786367318597385e-5
allele num: 17282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 3.802e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

DP
type: SiteQuality
SIO_000300: 6.94344e5

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.05708245243129e-4
allele num: 9460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18958
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.536e0

FS
type: SiteQuality
SIO_000300: 1.2757e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 7.20271e5

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 211
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GenotypeQuality
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GenotypeQuality
all individuals: 1753
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GenotypeQuality
all individuals: 425
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 696
bin: 3.75e1
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GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.621231979030144e-3
allele num: 1526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.536e0

FS
type: SiteQuality
SIO_000300: 1.2757e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

DP
type: SiteQuality
SIO_000300: 7.20271e5

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.051082615093546e-4
allele num: 9514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.649708532061473e-4
allele num: 3774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 2.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 7.3018e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14153
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.880689084480554e-4
allele num: 26586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 5.781e0

DP
type: SiteQuality
SIO_000300: 8.28415e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
SIO_000300: 1.478e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 1879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.829491401390413e-4
allele num: 5466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.366588145412873e-5
allele num: 31414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.88044e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 2.975e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

GenotypeQuality
all individuals: 1270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 576
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.591647036353218e-4
allele num: 31414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.829491401390413e-4
allele num: 5466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.844141069397042e-4
allele num: 3516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 8.88044e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 2.975e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 744
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16363
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variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 4203
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GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
all individuals: 28747
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variant carriers: 0

GenotypeQuality
all individuals: 341
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variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 143
allele frequency: 1.883561643835616e-2
allele num: 7592
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.258344459279039e-5
allele num: 47936
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.44158356898348e-5
allele num: 13438
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 8.212428141253764e-4
allele num: 7306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.124946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 30930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 493
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GenotypeQuality
all individuals: 381
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variant carriers: 0

GenotypeQuality
all individuals: 266
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GenotypeQuality
all individuals: 1352
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GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.396648044692737e-3
allele num: 716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50222
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.214e1

FS
type: SiteQuality
SIO_000300: 3.188e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.52e-1

DP
type: SiteQuality
SIO_000300: 1.159462e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
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GenotypeQuality
all individuals: 1111
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variant carriers: 0

GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 654
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 1733
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GenotypeQuality
all individuals: 396
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GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718685549291902e-5
allele num: 58184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.042100875364735e-4
allele num: 9596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.648052120728626e-5
allele num: 15042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.294572e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.003e1

FS
type: SiteQuality
SIO_000300: 5.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 412
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GenotypeQuality
all individuals: 792
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GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 2012
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GenotypeQuality
all individuals: 1201
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 37522
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15230
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.022244691607685e-4
allele num: 9890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.405e0

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.469e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.316875e6

GenotypeQuality
all individuals: 474
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 853
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GenotypeQuality
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GenotypeQuality
all individuals: 1323
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GenotypeQuality
all individuals: 576
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GenotypeQuality
all individuals: 454
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GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.041e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.341716e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39784
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.795089828016112e-5
allele num: 62564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.702e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 1.374315e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.413e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.284e1