9-100075585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075585
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075585
    reference: chr 9
allele count: 2
allele frequency: 1.649702228747711e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.966C>T
  hgvsp: ENST00000357054.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.620C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1120C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.549C>T
  hgvsp: ENST00000375202.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1391C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.760C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.549C>T
  hgvsp: ENST00000529487.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.549C>T
  hgvsp: ENST00000411667.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.966C>T
  hgvsp: ENST00000395220.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1901C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1702C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser183Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

9-100075586-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075586
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075586
    reference: chr 9
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1121G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.550G>T
  hgvsp: ENSP00000434727.1:p.Ala184Ser
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.621G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1392G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.967G>T
  hgvsp: ENSP00000378646.1:p.Ala323Ser
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.550G>T
  hgvsp: ENSP00000414000.2:p.Ala184Ser
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.761G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1902G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.550G>T
  hgvsp: ENSP00000364348.2:p.Ala184Ser
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.967G>T
  hgvsp: ENSP00000349562.1:p.Ala323Ser
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1703G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala184Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-100075588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075588
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075588
    reference: chr 9
allele count: 3
allele frequency: 2.474757473767571e-5
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1123T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.763T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.969T>C
  hgvsp: ENST00000395220.1:c.969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.969T>C
  hgvsp: ENST00000357054.1:c.969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1394T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1705T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.552T>C
  hgvsp: ENST00000529487.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.552T>C
  hgvsp: ENST00000375202.2:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.552T>C
  hgvsp: ENST00000411667.2:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1904T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.623T>C
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala184Ala
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

9-100075601-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075601
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075598
    reference: chr 9
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.988_990delGAG
  hgvsp: ENSP00000378646.1:p.Glu330del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.571_573delGAG
  hgvsp: ENSP00000434727.1:p.Glu191del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1413_1415delGAG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1724_1726delGAG
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.571_573delGAG
  hgvsp: ENSP00000364348.2:p.Glu191del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.988_990delGAG
  hgvsp: ENSP00000349562.1:p.Glu330del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.571_573delGAG
  hgvsp: ENSP00000414000.2:p.Glu191del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.782_784delGAG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.642_644delGAG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1142_1144delGAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1923_1925delGAG
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu191del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: CAGG
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-100075614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075614
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075614
    reference: chr 9
allele count: 8
allele frequency: 6.612881893929374e-5
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.578C>T
  hgvsp: ENSP00000414000.2:p.Ala193Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.649C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.578C>T
  hgvsp: ENSP00000364348.2:p.Ala193Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1149C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.789C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.578C>T
  hgvsp: ENSP00000434727.1:p.Ala193Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1420C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.995C>T
  hgvsp: ENSP00000349562.1:p.Ala332Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1731C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1930C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.995C>T
  hgvsp: ENSP00000378646.1:p.Ala332Val
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15748
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala193Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

9-100075617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075617
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075617
    reference: chr 9
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.581A>G
  hgvsp: ENSP00000414000.2:p.Gln194Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.652A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.998A>G
  hgvsp: ENSP00000349562.1:p.Gln333Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.792A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1423A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.581A>G
  hgvsp: ENSP00000364348.2:p.Gln194Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1152A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.581A>G
  hgvsp: ENSP00000434727.1:p.Gln194Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1734A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.998A>G
  hgvsp: ENSP00000378646.1:p.Gln333Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1933A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln194Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-100075618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075618
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075618
    reference: chr 9
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.582G>A
  hgvsp: ENST00000375202.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.999G>A
  hgvsp: ENST00000395220.1:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1735G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.582G>A
  hgvsp: ENST00000411667.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.582G>A
  hgvsp: ENST00000529487.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1153G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1424G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.793G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.653G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.999G>A
  hgvsp: ENST00000357054.1:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1934G>A
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: n.793G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-100075620-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075620
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075619
    reference: chr 9
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1158delG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1740delG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.587delG
  hgvsp: ENSP00000434727.1:p.Gly196GlufsTer16
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.582+5delG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.658delG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.793+5delG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.587delG
  hgvsp: ENSP00000364348.2:p.Gly196GlufsTer16
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1004delG
  hgvsp: ENSP00000378646.1:p.Gly335GlufsTer16
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1939delG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1004delG
  hgvsp: ENSP00000349562.1:p.Gly335GlufsTer16
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1429delG
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly196GlufsTer16
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

9-100075623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075623
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075623
    reference: chr 9
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.587G>A
  hgvsp: ENSP00000434727.1:p.Gly196Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1004G>A
  hgvsp: ENSP00000378646.1:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1740G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1004G>A
  hgvsp: ENSP00000349562.1:p.Gly335Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.587G>A
  hgvsp: ENSP00000364348.2:p.Gly196Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.658G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1158G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.793+5G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.582+5G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1939G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1429G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly196Glu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-100075661-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100075661
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100075660
    reference: chr 9
allele count: 1
allele frequency: 8.793218669761879e-6
allele num: 113724
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1744+35delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1008+35delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.793+44delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1433+35delT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.591+35delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.582+44delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1008+35delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1162+35delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.591+35delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.662+35delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1943+35delT
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: CT
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-100076631-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076631
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076631
    reference: chr 9
allele count: 6
allele frequency: 4.977105315548477e-5
allele num: 120552
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-44A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-44A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-44A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-44A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-269A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-44A>G
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-100076635-GTGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076635
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076632
    reference: chr 9
allele count: 3
allele frequency: 2.482210822439186e-5
allele num: 120860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-37_1163-35delCTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-37_583-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-37_592-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-37_1944-35delCTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-37_1009-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-37_663-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-37_794-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-262_1434-260delCTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-37_1009-35delCTG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-37_1745-35delCTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-37_592-35delCTG
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: GTGC
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

9-100076639-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076639
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076639
    reference: chr 9
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-36T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-36T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-261T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-36T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-36T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-36T>C
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

9-100076660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076660
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076660
    reference: chr 9
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-15C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-15C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-15C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-15C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-240C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-100076662-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076662
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076662
    reference: chr 9
allele count: 3
allele frequency: 2.477250582153887e-5
allele num: 121102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-238T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-13T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-13T>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-13T>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-13T>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-100076665-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076665
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076665
    reference: chr 9
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1745-10C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1163-10C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1009-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1009-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.592-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.663-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1944-10C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.592-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-235C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.583-10C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.794-10C>A
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-100076678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076678
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076678
    reference: chr 9
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.595A>G
  hgvsp: ENSP00000364348.2:p.Met199Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.586A>G
  hgvsp: ENSP00000414000.2:p.Met196Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.797A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1012A>G
  hgvsp: ENSP00000349562.1:p.Met338Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1166A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.666A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1947A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-222A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.595A>G
  hgvsp: ENSP00000434727.1:p.Met199Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1748A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1012A>G
  hgvsp: ENSP00000378646.1:p.Met338Val
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7483
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Met199Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

9-100076679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076679
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076679
    reference: chr 9
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1013T>C
  hgvsp: ENSP00000378646.1:p.Met338Thr
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.596T>C
  hgvsp: ENSP00000434727.1:p.Met199Thr
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.587T>C
  hgvsp: ENSP00000414000.2:p.Met196Thr
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.596T>C
  hgvsp: ENSP00000364348.2:p.Met199Thr
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.798T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-221T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1013T>C
  hgvsp: ENSP00000349562.1:p.Met338Thr
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1749T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.667T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1167T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1948T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met199Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/9-100076685-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076685
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076685
    reference: chr 9
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1954C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.593C>A
  hgvsp: ENSP00000414000.2:p.Pro198His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.673C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-215C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1019C>A
  hgvsp: ENSP00000378646.1:p.Pro340His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1019C>A
  hgvsp: ENSP00000349562.1:p.Pro340His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.602C>A
  hgvsp: ENSP00000364348.2:p.Pro201His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.602C>A
  hgvsp: ENSP00000434727.1:p.Pro201His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1173C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.804C>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1755C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro201His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

9-100076685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076685
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076685
    reference: chr 9
allele count: 2
allele frequency: 1.649049323065253e-5
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1019C>T
  hgvsp: ENSP00000349562.1:p.Pro340Leu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1173C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.602C>T
  hgvsp: ENSP00000434727.1:p.Pro201Leu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-215C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.804C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1019C>T
  hgvsp: ENSP00000378646.1:p.Pro340Leu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.593C>T
  hgvsp: ENSP00000414000.2:p.Pro198Leu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1755C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1954C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.602C>T
  hgvsp: ENSP00000364348.2:p.Pro201Leu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.673C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro201Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-100076690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076690
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076690
    reference: chr 9
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.607A>G
  hgvsp: ENSP00000364348.2:p.Ile203Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1024A>G
  hgvsp: ENSP00000349562.1:p.Ile342Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.809A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1178A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1959A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.607A>G
  hgvsp: ENSP00000434727.1:p.Ile203Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1024A>G
  hgvsp: ENSP00000378646.1:p.Ile342Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.598A>G
  hgvsp: ENSP00000414000.2:p.Ile200Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.678A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-210A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1760A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile203Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-100076692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076692
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076692
    reference: chr 9
allele count: 4
allele frequency: 3.297663605335619e-5
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1762C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-208C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1180C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1026C>T
  hgvsp: ENST00000395220.1:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.609C>T
  hgvsp: ENST00000375202.2:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.680C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1961C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.811C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.609C>T
  hgvsp: ENST00000529487.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1026C>T
  hgvsp: ENST00000357054.1:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.600C>T
  hgvsp: ENST00000411667.2:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8572
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile203Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

9-100076693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076693
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076693
    reference: chr 9
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1181G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1027G>A
  hgvsp: ENSP00000378646.1:p.Val343Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1962G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.812G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1763G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.681G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.601G>A
  hgvsp: ENSP00000414000.2:p.Val201Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1027G>A
  hgvsp: ENSP00000349562.1:p.Val343Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-207G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.610G>A
  hgvsp: ENSP00000434727.1:p.Val204Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.610G>A
  hgvsp: ENSP00000364348.2:p.Val204Met
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val204Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-100076696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076696
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076696
    reference: chr 9
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1030G>A
  hgvsp: ENSP00000378646.1:p.Asp344Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1766G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.613G>A
  hgvsp: ENSP00000434727.1:p.Asp205Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.815G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.613G>A
  hgvsp: ENSP00000364348.2:p.Asp205Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1030G>A
  hgvsp: ENSP00000349562.1:p.Asp344Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.684G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.604G>A
  hgvsp: ENSP00000414000.2:p.Asp202Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1965G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1184G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-204G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp205Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-100076698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076698
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076698
    reference: chr 9
allele count: 13
allele frequency: 1.071581654522075e-4
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1186C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1768C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.615C>T
  hgvsp: ENST00000375202.2:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.606C>T
  hgvsp: ENST00000411667.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1967C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-202C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.615C>T
  hgvsp: ENST00000529487.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1032C>T
  hgvsp: ENST00000395220.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.817C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1032C>T
  hgvsp: ENST00000357054.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.686C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp205Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

9-100076700-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076700
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076698
    reference: chr 9
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1189_1190delAG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1771_1772delAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.689_690delAG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.618_619delAG
  hgvsp: ENSP00000364348.2:p.Gly208ThrfsTer8
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.609_610delAG
  hgvsp: ENSP00000414000.2:p.Gly205ThrfsTer8
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1035_1036delAG
  hgvsp: ENSP00000378646.1:p.Gly347ThrfsTer8
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.618_619delAG
  hgvsp: ENSP00000434727.1:p.Gly208ThrfsTer8
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1035_1036delAG
  hgvsp: ENSP00000349562.1:p.Gly347ThrfsTer8
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-199_1434-198delAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.820_821delAG
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1970_1971delAG
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7479
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly208ThrfsTer8
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CAG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

9-100076703-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076703
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076703
    reference: chr 9
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.691G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1191G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1037G>T
  hgvsp: ENSP00000378646.1:p.Gly346Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.611G>T
  hgvsp: ENSP00000414000.2:p.Gly204Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1037G>T
  hgvsp: ENSP00000349562.1:p.Gly346Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1972G>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1773G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.822G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.620G>T
  hgvsp: ENSP00000434727.1:p.Gly207Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.620G>T
  hgvsp: ENSP00000364348.2:p.Gly207Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-197G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly207Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

9-100076706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076706
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076706
    reference: chr 9
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.623G>A
  hgvsp: ENSP00000434727.1:p.Gly208Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1194G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1975G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.694G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1040G>A
  hgvsp: ENSP00000349562.1:p.Gly347Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.623G>A
  hgvsp: ENSP00000364348.2:p.Gly208Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1776G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.614G>A
  hgvsp: ENSP00000414000.2:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1040G>A
  hgvsp: ENSP00000378646.1:p.Gly347Glu
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.825G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-194G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly208Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

9-100076708-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076708
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076709
    reference: chr 9
allele count: 15
allele frequency: 1.236379222235044e-4
allele num: 121322
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.632dupT
  hgvsp: ENSP00000364348.2:p.Leu211PhefsTer6
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1984dupT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.834dupT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-185dupT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1049dupT
  hgvsp: ENSP00000378646.1:p.Leu350PhefsTer6
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.703dupT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1785dupT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1049dupT
  hgvsp: ENSP00000349562.1:p.Leu350PhefsTer6
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.632dupT
  hgvsp: ENSP00000434727.1:p.Leu211PhefsTer6
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.623dupT
  hgvsp: ENSP00000414000.2:p.Leu208PhefsTer6
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1203dupT
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 9.75e1
  variant carriers: 15
hgvs: p.Leu211PhefsTer6
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

9-100076708-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076708
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076707
    reference: chr 9
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.623delT
  hgvsp: ENSP00000414000.2:p.Leu208Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.632delT
  hgvsp: ENSP00000364348.2:p.Leu211Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1049delT
  hgvsp: ENSP00000349562.1:p.Leu350Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.632delT
  hgvsp: ENSP00000434727.1:p.Leu211Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1049delT
  hgvsp: ENSP00000378646.1:p.Leu350Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.834delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.703delT
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-185delT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1785delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1203delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1984delT
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25897
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33727
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu211Ter
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: CT
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

9-100076715-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076715
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076715
    reference: chr 9
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.632T>G
  hgvsp: ENSP00000364348.2:p.Leu211Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1203T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.834T>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1785T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1049T>G
  hgvsp: ENSP00000349562.1:p.Leu350Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.623T>G
  hgvsp: ENSP00000414000.2:p.Leu208Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.632T>G
  hgvsp: ENSP00000434727.1:p.Leu211Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.703T>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.1984T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1049T>G
  hgvsp: ENSP00000378646.1:p.Leu350Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-185T>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu211Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-100076734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076734
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076734
    reference: chr 9
allele count: 3
allele frequency: 2.472106399459433e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.853T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-166T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1068T>C
  hgvsp: ENST00000357054.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.651T>C
  hgvsp: ENST00000529487.1:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.651T>C
  hgvsp: ENST00000375202.2:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1222T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.642T>C
  hgvsp: ENST00000411667.2:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1804T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2003T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.722T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1068T>C
  hgvsp: ENST00000395220.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser217Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

9-100076740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076740
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076740
    reference: chr 9
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1074A>G
  hgvsp: ENST00000357054.1:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.859A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1074A>G
  hgvsp: ENST00000395220.1:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.657A>G
  hgvsp: ENST00000529487.1:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1810A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.657A>G
  hgvsp: ENST00000375202.2:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.728A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.648A>G
  hgvsp: ENST00000411667.2:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2009A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-160A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1228A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu219Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-100076750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076750
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076750
    reference: chr 9
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.869C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.667C>T
  hgvsp: ENSP00000364348.2:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1084C>T
  hgvsp: ENSP00000349562.1:p.Arg362Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.658C>T
  hgvsp: ENSP00000414000.2:p.Arg220Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1084C>T
  hgvsp: ENSP00000378646.1:p.Arg362Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1820C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1238C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-150C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.667C>T
  hgvsp: ENSP00000434727.1:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2019C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.738C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg223Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

9-100076751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076751
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076751
    reference: chr 9
allele count: 126
allele frequency: 1.038370253164557e-3
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1085G>A
  hgvsp: ENSP00000349562.1:p.Arg362His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2020G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.739G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.659G>A
  hgvsp: ENSP00000414000.2:p.Arg220His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.870G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.668G>A
  hgvsp: ENSP00000364348.2:p.Arg223His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1821G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1085G>A
  hgvsp: ENSP00000378646.1:p.Arg362His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.668G>A
  hgvsp: ENSP00000434727.1:p.Arg223His
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1239G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-149G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25931
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg223His
num of homozygotes: 1
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

9-100076752-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076752
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076752
    reference: chr 9
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.669T>C
  hgvsp: ENST00000375202.2:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.660T>C
  hgvsp: ENST00000411667.2:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.871T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.669T>C
  hgvsp: ENST00000529487.1:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1240T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2021T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1822T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-148T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1086T>C
  hgvsp: ENST00000395220.1:c.1086T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.740T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1086T>C
  hgvsp: ENST00000357054.1:c.1086T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg223Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

9-100076755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076755
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076755
    reference: chr 9
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.743C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.874C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1089C>T
  hgvsp: ENST00000395220.1:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.663C>T
  hgvsp: ENST00000411667.2:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1243C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-145C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2024C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.672C>T
  hgvsp: ENST00000529487.1:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1089C>T
  hgvsp: ENST00000357054.1:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.672C>T
  hgvsp: ENST00000375202.2:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1825C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu224Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

9-100076764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076764
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076764
    reference: chr 9
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.883G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.752G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-136G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.681G>A
  hgvsp: ENST00000375202.2:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1098G>A
  hgvsp: ENST00000357054.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.672G>A
  hgvsp: ENST00000411667.2:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2033G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1834G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1098G>A
  hgvsp: ENST00000395220.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.681G>A
  hgvsp: ENST00000529487.1:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1252G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys227Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-100076765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076765
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076765
    reference: chr 9
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.682G>A
  hgvsp: ENSP00000434727.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2034G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1099G>A
  hgvsp: ENSP00000349562.1:p.Val367Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.673G>A
  hgvsp: ENSP00000414000.2:p.Val225Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1099G>A
  hgvsp: ENSP00000378646.1:p.Val367Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1253G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-135G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.884G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1835G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.682G>A
  hgvsp: ENSP00000364348.2:p.Val228Met
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.753G>A
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val228Met
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-100076768-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076768
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076767
    reference: chr 9
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1106delA
  hgvsp: ENSP00000349562.1:p.Asn369MetfsTer49
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.760delA
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.689delA
  hgvsp: ENSP00000364348.2:p.Asn230MetfsTer49
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2041delA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.689delA
  hgvsp: ENSP00000434727.1:p.Asn230MetfsTer49
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1842delA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1106delA
  hgvsp: ENSP00000378646.1:p.Asn369MetfsTer49
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1260delA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.680delA
  hgvsp: ENSP00000414000.2:p.Asn227MetfsTer49
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.891delA
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-128delA
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn230MetfsTer49
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: GA
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

9-100076782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076782
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076782
    reference: chr 9
allele count: 5
allele frequency: 4.120856478810556e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.901C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.690C>T
  hgvsp: ENST00000411667.2:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1270C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2051C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1116C>T
  hgvsp: ENST00000357054.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.699C>T
  hgvsp: ENST00000375202.2:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1116C>T
  hgvsp: ENST00000395220.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.699C>T
  hgvsp: ENST00000529487.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.770C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1852C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-118C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn233Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

9-100076783-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076783
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076783
    reference: chr 9
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.691C>G
  hgvsp: ENSP00000414000.2:p.Leu231Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.700C>G
  hgvsp: ENSP00000364348.2:p.Leu234Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.771C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1117C>G
  hgvsp: ENSP00000349562.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.700C>G
  hgvsp: ENSP00000434727.1:p.Leu234Val
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1853C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-117C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1271C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.902C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2052C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1117C>G
  hgvsp: ENSP00000378646.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8573
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu234Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

9-100076789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076789
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076789
    reference: chr 9
allele count: 6
allele frequency: 4.945272319662403e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.908G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.706G>A
  hgvsp: ENSP00000364348.2:p.Asp236Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1123G>A
  hgvsp: ENSP00000349562.1:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.706G>A
  hgvsp: ENSP00000434727.1:p.Asp236Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.777G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1277G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.697G>A
  hgvsp: ENSP00000414000.2:p.Asp233Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1859G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1123G>A
  hgvsp: ENSP00000378646.1:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2058G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-111G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp236Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

9-100076793-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076793
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076793
    reference: chr 9
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1127A>G
  hgvsp: ENSP00000378646.1:p.Tyr376Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.701A>G
  hgvsp: ENSP00000414000.2:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.710A>G
  hgvsp: ENSP00000364348.2:p.Tyr237Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1127A>G
  hgvsp: ENSP00000349562.1:p.Tyr376Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-107A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1863A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2062A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.710A>G
  hgvsp: ENSP00000434727.1:p.Tyr237Cys
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.912A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1281A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.781A>G
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr237Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

9-100076801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076801
    reference: chr 9
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-99C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1289C>T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.718C>T
  hgvsp: ENSP00000364348.2:p.Gln240Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.709C>T
  hgvsp: ENSP00000414000.2:p.Gln237Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2070C>T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.718C>T
  hgvsp: ENSP00000434727.1:p.Gln240Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1871C>T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1135C>T
  hgvsp: ENSP00000378646.1:p.Gln379Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.920C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1135C>T
  hgvsp: ENSP00000349562.1:p.Gln379Ter
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.789C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln240Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

9-100076807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076807
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076807
    reference: chr 9
allele count: 4
allele frequency: 3.29733740004946e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-93G>A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+4G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+4G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+4G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: n.1873+4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

9-100076817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076817
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076817
    reference: chr 9
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+14C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+14C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-83C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+14C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+14C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+14C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

9-100076820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076820
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076820
    reference: chr 9
allele count: 15
allele frequency: 1.237052187108267e-4
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+17G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+17G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+17G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+17G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-80G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+17G>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

9-100076829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076829
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076829
    reference: chr 9
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+26T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+26T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-71T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+26T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+26T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+26T>C
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

9-100076833-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076833
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076833
    reference: chr 9
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+30C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-67C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+30C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+30C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+30C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+30C>G
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-100076838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076838
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076838
    reference: chr 9
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+35C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+35C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+35C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-62C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+35C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+35C>G
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-100076841-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076841
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076841
    reference: chr 9
allele count: 8
allele frequency: 6.601640507666154e-5
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+38G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-59G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+38G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+38G>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+38G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+38G>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

9-100076843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076843
    reference: chr 9
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-57C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+40C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+40C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+40C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+40C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

9-100076844-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076844
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076844
    reference: chr 9
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.720+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.720+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-56C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.711+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1137+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1873+41C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.791+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1137+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.922+41C>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1291+41C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2072+41C>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

9-100076866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076866
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076866
    reference: chr 9
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-34C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-34C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-34C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-34C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-34C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-34C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

9-100076867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076867
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076867
    reference: chr 9
allele count: 3
allele frequency: 2.480117722921248e-5
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-33G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-33G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-33G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-33G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-33G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-33G>A
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-100076886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076886
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076886
    reference: chr 9
allele count: 1
allele frequency: 8.272530236098013e-6
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-14A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-14A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-14A>G
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-14A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-14A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-100076892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076892
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076892
    reference: chr 9
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-8C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-8C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-8C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.1874-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

9-100076896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076896
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076896
    reference: chr 9
allele count: 14476
allele frequency: 1.198165836216458e-1
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-4G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-4G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-4G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-4G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-4G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.75e1
  variant carriers: 942
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.75e1
  variant carriers: 1345
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 982
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.75e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 3.25e1
  variant carriers: 745
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.75e1
  variant carriers: 1417
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 743
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.25e1
  variant carriers: 1275
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.25e1
  variant carriers: 1433
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.75e1
  variant carriers: 521
genotype quality: GenotypeQuality
hgvs: n.1874-4G>A
num of homozygotes: 1346
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

9-100076896-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076896
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076896
    reference: chr 9
allele count: 3
allele frequency: 2.483073714181662e-5
allele num: 120818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.923-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1434-4G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.792-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1138-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.712-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.721-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1874-4G>C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.721-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1138-4G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1292-4G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2073-4G>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.1874-4G>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-100076907-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076907
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076907
    reference: chr 9
allele count: 5
allele frequency: 4.139346976620968e-5
allele num: 120792
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1881T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1441T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.799T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.930T>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.728T>C
  hgvsp: ENSP00000434727.1:p.Leu243Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.728T>C
  hgvsp: ENSP00000364348.2:p.Leu243Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2080T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1299T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1145T>C
  hgvsp: ENSP00000378646.1:p.Leu382Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1145T>C
  hgvsp: ENSP00000349562.1:p.Leu382Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.719T>C
  hgvsp: ENSP00000414000.2:p.Leu240Pro
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30109
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39391
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu243Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

9-100076912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076912
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076912
    reference: chr 9
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.733C>T
  hgvsp: ENST00000375202.2:c.733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1150C>T
  hgvsp: ENST00000357054.1:c.1150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.724C>T
  hgvsp: ENST00000411667.2:c.724C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1150C>T
  hgvsp: ENST00000395220.1:c.1150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1886C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.804C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1304C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.935C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.733C>T
  hgvsp: ENST00000529487.1:c.733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2085C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1446C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu245Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-100076924-GTGGCCGGGCGGTTAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076924
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076909
    reference: chr 9
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsp: ENSP00000434727.1:p.Ala250_Leu254del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsp: ENSP00000378646.1:p.Ala389_Leu393del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsp: ENSP00000364348.2:p.Ala250_Leu254del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsp: ENSP00000349562.1:p.Ala389_Leu393del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsp: ENSP00000414000.2:p.Ala247_Leu251del
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 30139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala250_Leu254del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: GTGGCCGGGCGGTTAC
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-100076929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076929
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076929
    reference: chr 9
allele count: 2
allele frequency: 1.657165583985152e-5
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.750C>T
  hgvsp: ENST00000375202.2:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2102C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1167C>T
  hgvsp: ENST00000395220.1:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.750C>T
  hgvsp: ENST00000529487.1:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.741C>T
  hgvsp: ENST00000411667.2:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1903C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1167C>T
  hgvsp: ENST00000357054.1:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.821C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1463C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1321C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.952C>T
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala250Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

9-100076930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076930
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076930
    reference: chr 9
allele count: 3
allele frequency: 2.485954357877989e-5
allele num: 120678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.751G>A
  hgvsp: ENSP00000434727.1:p.Gly251Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.751G>A
  hgvsp: ENSP00000364348.2:p.Gly251Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1904G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.953G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1168G>A
  hgvsp: ENSP00000378646.1:p.Gly390Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.742G>A
  hgvsp: ENSP00000414000.2:p.Gly248Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.822G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1168G>A
  hgvsp: ENSP00000349562.1:p.Gly390Arg
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1464G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1322G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2103G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly251Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

9-100076933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076933
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076933
    reference: chr 9
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.956C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1325C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.754C>T
  hgvsp: ENSP00000364348.2:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.754C>T
  hgvsp: ENSP00000434727.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2106C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1907C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.825C>T
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1171C>T
  hgvsp: ENSP00000378646.1:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1171C>T
  hgvsp: ENSP00000349562.1:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.745C>T
  hgvsp: ENSP00000414000.2:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1467C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg252Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

9-100076934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076934
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076934
    reference: chr 9
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1172G>A
  hgvsp: ENSP00000349562.1:p.Arg391Gln
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.957G>A
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1172G>A
  hgvsp: ENSP00000378646.1:p.Arg391Gln
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1468G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1326G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2107G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.746G>A
  hgvsp: ENSP00000414000.2:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.755G>A
  hgvsp: ENSP00000364348.2:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.755G>A
  hgvsp: ENSP00000434727.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1908G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.826G>A
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg252Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-100076934-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100076934
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 100076934
    reference: chr 9
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000460482
  gene symbol: CCDC180
  hgvsc: ENST00000460482.2:n.957G>C
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000434727
  ensembl transcript: ENST00000529487
  gene symbol: CCDC180
  hgvsc: ENST00000529487.1:c.755G>C
  hgvsp: ENSP00000434727.1:p.Arg252Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000349562
  ensembl transcript: ENST00000357054
  gene symbol: CCDC180
  hgvsc: ENST00000357054.1:c.1172G>C
  hgvsp: ENSP00000349562.1:p.Arg391Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000364348
  ensembl transcript: ENST00000375202
  gene symbol: CCDC180
  hgvsc: ENST00000375202.2:c.755G>C
  hgvsp: ENSP00000364348.2:p.Arg252Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000378646
  ensembl transcript: ENST00000395220
  gene symbol: CCDC180
  hgvsc: ENST00000395220.1:c.1172G>C
  hgvsp: ENSP00000378646.1:p.Arg391Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197816
  ensembl protein: ENSP00000414000
  ensembl transcript: ENST00000411667
  gene symbol: CCDC180
  hgvsc: ENST00000411667.2:c.746G>C
  hgvsp: ENSP00000414000.2:p.Arg249Pro
  variant of: http://identifiers.org/hgnc/29303
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000529787
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000529787.1:n.1326G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000534123
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000534123.1:n.1908G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000375206
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000375206.2:n.2107G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255036
  ensembl transcript: ENST00000532526
  gene symbol: RP11-23J9.4
  hgvsc: ENST00000532526.1:n.1468G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197816
  ensembl transcript: ENST00000494917
  gene symbol: CCDC180
  hgvsc: ENST00000494917.2:n.826G>C
  variant of: http://identifiers.org/hgnc/29303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg252Pro
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933861922258751e-4
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.842e1

VQSLOD
type: SiteQuality
SIO_000300: -2.679e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

DP
type: SiteQuality
SIO_000300: 1.815717e6

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.182e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.547e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e0

DP
type: SiteQuality
SIO_000300: 1.815574e6

VQSLOD
type: SiteQuality
SIO_000300: -1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 10452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.626e0

MQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

DP
type: SiteQuality
SIO_000300: 1.815515e6

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002011347602894e-5
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.887e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.744e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.58e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.363e0

DP
type: SiteQuality
SIO_000300: 1.814681e6

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.052821561785585e-4
allele num: 66488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 1.058e0

DP
type: SiteQuality
SIO_000300: 1.810732e6

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

QD
type: SiteQuality
SIO_000300: 1.395e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 36970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.803345e6

MQ
type: SiteQuality
SIO_000300: 5.904e1

MQRankSum
type: SiteQuality
SIO_000300: -1.588e0

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -1.595e0

MQ
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10916
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.322711178553364e-5
allele num: 15816
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 6.070908207867897e-5
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.040471156750227e-5
allele num: 66220
num of homozygotes: 0

Other
type: Population
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allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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allele frequency: 1.819946614899296e-4
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DP
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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East Asian
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South Asian
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.805282e6

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7482
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: -8.462e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.059e0

FS
type: SiteQuality
SIO_000300: 7.236e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.805876e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 1.832e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.807561e6

QD
type: SiteQuality
SIO_000300: 9.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
all individuals: 8581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 9.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.810129e6

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.491e0

FS
type: SiteQuality
SIO_000300: 2.311e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.81013e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: -1.528e0

QD
type: SiteQuality
SIO_000300: 7.04e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33672
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7485
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 995
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.810879e6

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33672
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7485
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.810879e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.811158e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.367e1

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7483
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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African
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FS
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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DP
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MQ
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MQRankSum
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.874015748031496e-4
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
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MQ
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DP
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

South Asian
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Other
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 6.043e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele num: 16510
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Latino
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Other
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FS
type: SiteQuality
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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QD
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 3142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.008e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.812952e6

FS
type: SiteQuality
SIO_000300: 1.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

FS
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 1.812097e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.47e-1

FS
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 1.812394e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 1.739e0

DP
type: SiteQuality
SIO_000300: 1.812355e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.804e1

VQSLOD
type: SiteQuality
SIO_000300: -9.258999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.785e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 1.812654e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 1.106e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 124

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 51
allele frequency: 3.089036947304664e-3
allele num: 16510
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.123401313515382e-3
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 8.695130726792996e-4
allele num: 66704
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.817756e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.267e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1999
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
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GenotypeQuality
all individuals: 1323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
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SIO_000300: 5.97e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

FS
type: SiteQuality
SIO_000300: 4.528e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.238e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.811879e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 33808
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
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South Asian
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East Asian
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ClippingRankSum
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DP
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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SIO_000300: -1.382e0

ReadPosRankSum
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SIO_000300: 1.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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BaseQRankSum
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FS
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DP
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MQRankSum
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele num: 16510
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Other
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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Latino
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Other
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: 2.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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ClippingRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Latino
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East Asian
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DP
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
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allele num: 10378
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16510
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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MQ
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DP
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.200192030724916e-4
allele num: 66656
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 1.93050193050193e-4
allele num: 10360
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
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allele frequency: 9.658103148541626e-5
allele num: 10354
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South Asian
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Latino
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allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 1.94e-2

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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DP
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
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Other
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South Asian
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 66626
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Latino
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Other
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European (Finnish)
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 3072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7413
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

FS
type: SiteQuality
SIO_000300: 1.5119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

DP
type: SiteQuality
SIO_000300: 1.803981e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 984
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.19e-2

DP
type: SiteQuality
SIO_000300: 1.803963e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.269e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.451e0

FS
type: SiteQuality
SIO_000300: 1.005e0

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

GenotypeQuality
all individuals: 3045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 8117
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32024
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variant carriers: 0

GenotypeQuality
all individuals: 1958
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 1307
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variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.79639e6

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.803e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.56e-2

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.0346e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.795909e6

QD
type: SiteQuality
SIO_000300: 1.464e1

GenotypeQuality
all individuals: 319
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.794688e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

QD
type: SiteQuality
SIO_000300: 2.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 7427
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 1972
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 309
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GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 8113
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 1.794859e6

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 9.6e0

FS
type: SiteQuality
SIO_000300: 4.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 7108
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 46

GenotypeQuality
all individuals: 2366
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 25
bin: 2.5e0
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GenotypeQuality
all individuals: 30975
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2146
bin: 7.75e1
variant carriers: 28

GenotypeQuality
all individuals: 14307
bin: 9.75e1
variant carriers: 12868

GenotypeQuality
all individuals: 208
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 37

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 15

Other
type: Population
allele count: 112
allele frequency: 1.244444444444444e-1
allele num: 900
num of homozygotes: 9

African
type: Population
allele count: 3756
allele frequency: 3.678025851938895e-1
allele num: 10212
num of homozygotes: 701

East Asian
type: Population
allele count: 1661
allele frequency: 1.922898819171104e-1
allele num: 8638
num of homozygotes: 162

Latino
type: Population
allele count: 841
allele frequency: 7.285169785169786e-2
allele num: 11544
num of homozygotes: 31

European (Finnish)
type: Population
allele count: 1106
allele frequency: 1.684948202315661e-1
allele num: 6564
num of homozygotes: 81

European (Non-Finnish)
type: Population
allele count: 6450
allele frequency: 9.701874191510484e-2
allele num: 66482
num of homozygotes: 351

South Asian
type: Population
allele count: 550
allele frequency: 3.337783711615487e-2
allele num: 16478
num of homozygotes: 11

DP
type: SiteQuality
SIO_000300: 2.020555e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.547e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
all individuals: 208
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 7108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 30975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 2146
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variant carriers: 0

GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14307
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.473026163463765e-4
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.020555e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
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SIO_000300: 1.547e1

VQSLOD
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SIO_000300: 5.17e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

Latino
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allele count: 5
allele frequency: 4.329754069968826e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.678456e6

FS
type: SiteQuality
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MQRankSum
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SIO_000300: -4.36e-1

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.221e0

DP
type: SiteQuality
SIO_000300: 1.678739e6

FS
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 8.509e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.145e0

VQSLOD
type: SiteQuality
SIO_000300: -2.162e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.101e0

DP
type: SiteQuality
SIO_000300: 1.676504e6

QD
type: SiteQuality
SIO_000300: 4.3e0

GenotypeQuality
all individuals: 39603
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2717
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
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East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.675485e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.515488124266233e-5
allele num: 66438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.676086e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.833e1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

African
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allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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InbreedingCoeff
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SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
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FS
type: SiteQuality
SIO_000300: 8.255000000000001e0

MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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