http://identifiers.org/exac.variant/9-35090273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090273
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090273
    reference: chr 9
allele count: 3
allele frequency: 2.54569522936714e-5
allele num: 117846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3864T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1608T>G
  hgvsp: ENST00000361778.2:c.1608T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2859T>G
  hgvsp: ENST00000341666.3:c.2859T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5069T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1608T>G
  hgvsp: ENST00000298004.5:c.1608T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+190T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2859T>G
  hgvsp: ENST00000378617.3:c.2859T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38370
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly953Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

9-35090274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090274
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090274
    reference: chr 9
allele count: 1
allele frequency: 8.512087163772557e-6
allele num: 117480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1607G>A
  hgvsp: ENSP00000298004.5:p.Gly536Asp
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1607G>A
  hgvsp: ENSP00000354678.2:p.Gly536Asp
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2858G>A
  hgvsp: ENSP00000367880.3:p.Gly953Asp
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3863G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+189G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5068G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2858G>A
  hgvsp: ENSP00000339382.3:p.Gly953Asp
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly953Asp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-35090291-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090291
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090291
    reference: chr 9
allele count: 1
allele frequency: 8.694140149539211e-6
allele num: 115020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5051C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-14C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+172C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-14C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-10C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-14C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-14C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-35090297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090297
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090297
    reference: chr 9
allele count: 11
allele frequency: 9.611855787210989e-5
allele num: 114442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-20C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5045C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-20C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-20C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-16C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-20C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+166C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23680
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-35090300-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090300
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090300
    reference: chr 9
allele count: 1
allele frequency: 8.769468219447172e-6
allele num: 114032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5042A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-23A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-23A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-23A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+163A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-19A>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-23A>T
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-35090302-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090302
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090302
    reference: chr 9
allele count: 1
allele frequency: 8.811814881392972e-6
allele num: 113484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-25C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-25C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-21C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-25C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5040C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-25C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+161C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-35090309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090309
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090309
    reference: chr 9
allele count: 4
allele frequency: 3.552082408311873e-5
allele num: 112610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-28G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+154G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5033G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-32G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-35090321-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090321
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090321
    reference: chr 9
allele count: 1
allele frequency: 9.089586969168121e-6
allele num: 110016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-44C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-40C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5021C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-44C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+142C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-44C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-44C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6614
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

9-35090328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090328
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090328
    reference: chr 9
allele count: 1
allele frequency: 9.1748169624016e-6
allele num: 108994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-51G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5014G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-51G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-51G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+135G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-51G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-47G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5514
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

9-35090329-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090329
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090329
    reference: chr 9
allele count: 1
allele frequency: 9.197601265589934e-6
allele num: 108724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3856-48T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1604-52T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2855-52T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.5013T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1604-52T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2855-52T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+134T>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7802
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6817
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

9-35090414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090414
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090414
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 80452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+49G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+49G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+49G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+49G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4928G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+49G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+49G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-35090418-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090418
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090418
    reference: chr 9
allele count: 1
allele frequency: 1.226361874862034e-5
allele num: 81542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+45T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+45T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+45T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+45T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+45T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4924T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+45T>C
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

9-35090421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090421
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090421
    reference: chr 9
allele count: 2
allele frequency: 2.452844072702298e-5
allele num: 81538
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+42C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+42C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4921C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+42C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+42C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+42C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+42C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

9-35090422-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090422
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090422
    reference: chr 9
allele count: 1
allele frequency: 1.227054088544223e-5
allele num: 81496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+41G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+41G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+41G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+41G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+41G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4920G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+41G>C
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9238
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5933
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/9-35090439-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090439
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090439
    reference: chr 9
allele count: 1
allele frequency: 1.165528333993799e-5
allele num: 85798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+24T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+24T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+24T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+24T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4903T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+24T>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+24T>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15252
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

9-35090447-AAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090447
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090444
    reference: chr 9
allele count: 1
allele frequency: 1.112025443142139e-5
allele num: 89926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+13_3855+15delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+13_204+15delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+13_1603+15delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+13_2854+15delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4892_4894delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+13_1603+15delCCT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+13_2854+15delCCT
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12995
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22511
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: AAGG
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-35090453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090453
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090453
    reference: chr 9
allele count: 3
allele frequency: 3.192712102507343e-5
allele num: 93964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+10C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+10C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+10C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+10C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+10C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4889C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+10C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26536
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

9-35090454-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090454
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090453
    reference: chr 9
allele count: 1
allele frequency: 1.057798087501058e-5
allele num: 94536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4887delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+8delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+8delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+8delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+8delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+8delC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+8delC
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2854+8delC
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

9-35090456-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090456
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090456
    reference: chr 9
allele count: 3
allele frequency: 3.124544337284146e-5
allele num: 96014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4886C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+7C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+7C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+7C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+7C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+7C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+7C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2854+7C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-35090456-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090456
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090456
    reference: chr 9
allele count: 15
allele frequency: 1.562272168642073e-4
allele num: 96014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.204+7C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3855+7C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1603+7C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2854+7C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4886C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1603+7C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2854+7C>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2854+7C>A
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

9-35090465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090465
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090465
    reference: chr 9
allele count: 1
allele frequency: 9.777847309136421e-6
allele num: 102272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2852C>T
  hgvsp: ENSP00000339382.3:p.Ala951Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2852C>T
  hgvsp: ENSP00000367880.3:p.Ala951Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1601C>T
  hgvsp: ENSP00000354678.2:p.Ala534Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1601C>T
  hgvsp: ENSP00000298004.5:p.Ala534Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3853C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4877C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.202C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32585
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala951Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

9-35090469-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090469
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090466
    reference: chr 9
allele count: 2
allele frequency: 1.889394826836964e-5
allele num: 105854
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2845_2847delCTC
  hgvsp: ENSP00000367880.3:p.Leu949del
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3846_3848delCTC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.195_197delCTC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2845_2847delCTC
  hgvsp: ENSP00000339382.3:p.Leu949del
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1594_1596delCTC
  hgvsp: ENSP00000298004.5:p.Leu532del
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1594_1596delCTC
  hgvsp: ENSP00000354678.2:p.Leu532del
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4870_4872delCTC
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8368
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu949del
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: AGAG
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

9-35090478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090478
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090478
    reference: chr 9
allele count: 3
allele frequency: 2.704164413196322e-5
allele num: 110940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1588C>T
  hgvsp: ENSP00000298004.5:p.His530Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3840C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1588C>T
  hgvsp: ENSP00000354678.2:p.His530Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2839C>T
  hgvsp: ENSP00000339382.3:p.His947Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2839C>T
  hgvsp: ENSP00000367880.3:p.His947Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4864C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.189C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5735
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His947Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

9-35090485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090485
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090485
    reference: chr 9
allele count: 1
allele frequency: 8.76577840112202e-6
allele num: 114080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2832T>C
  hgvsp: ENST00000341666.3:c.2832T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1581T>C
  hgvsp: ENST00000298004.5:c.1581T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3833T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.182T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4857T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2832T>C
  hgvsp: ENST00000378617.3:c.2832T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1581T>C
  hgvsp: ENST00000361778.2:c.1581T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe944Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-35090500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090500
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090500
    reference: chr 9
allele count: 2
allele frequency: 1.696842176709144e-5
allele num: 117866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1566G>A
  hgvsp: ENST00000361778.2:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2817G>A
  hgvsp: ENST00000341666.3:c.2817G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4842G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1566G>A
  hgvsp: ENST00000298004.5:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3818G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.167G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2817G>A
  hgvsp: ENST00000378617.3:c.2817G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val939Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

9-35090510-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090510
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090510
    reference: chr 9
allele count: 4
allele frequency: 3.351094132234175e-5
allele num: 119364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4832C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1556C>G
  hgvsp: ENSP00000298004.5:p.Ala519Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.157C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3808C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2807C>G
  hgvsp: ENSP00000339382.3:p.Ala936Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1556C>G
  hgvsp: ENSP00000354678.2:p.Ala519Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2807C>G
  hgvsp: ENSP00000367880.3:p.Ala936Gly
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala936Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

9-35090517-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090517
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090517
    reference: chr 9
allele count: 1
allele frequency: 8.335278231587371e-6
allele num: 119972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1549C>A
  hgvsp: ENSP00000354678.2:p.Leu517Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.150C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2800C>A
  hgvsp: ENSP00000367880.3:p.Leu934Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1549C>A
  hgvsp: ENSP00000298004.5:p.Leu517Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4825C>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2800C>A
  hgvsp: ENSP00000339382.3:p.Leu934Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3801C>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu934Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

9-35090518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090518
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090518
    reference: chr 9
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2799G>A
  hgvsp: ENSP00000367880.3:p.Trp933Ter
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1548G>A
  hgvsp: ENSP00000298004.5:p.Trp516Ter
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.149G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3800G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2799G>A
  hgvsp: ENSP00000339382.3:p.Trp933Ter
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1548G>A
  hgvsp: ENSP00000354678.2:p.Trp516Ter
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4824G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp933Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

9-35090544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090544
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090544
    reference: chr 9
allele count: 2
allele frequency: 1.655327672112695e-5
allele num: 120822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.123C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2773C>T
  hgvsp: ENSP00000367880.3:p.Pro925Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4798C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2773C>T
  hgvsp: ENSP00000339382.3:p.Pro925Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3774C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1522C>T
  hgvsp: ENSP00000298004.5:p.Pro508Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1522C>T
  hgvsp: ENSP00000354678.2:p.Pro508Ser
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro925Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-35090551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090551
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090551
    reference: chr 9
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4791G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1515G>C
  hgvsp: ENST00000361778.2:c.1515G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1515G>C
  hgvsp: ENST00000298004.5:c.1515G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2766G>C
  hgvsp: ENST00000341666.3:c.2766G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2766G>C
  hgvsp: ENST00000378617.3:c.2766G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3767G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.116G>C
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val922Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS

9-35090553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090553
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090553
    reference: chr 9
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2764G>A
  hgvsp: ENSP00000367880.3:p.Val922Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1513G>A
  hgvsp: ENSP00000298004.5:p.Val505Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2764G>A
  hgvsp: ENSP00000339382.3:p.Val922Met
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3765G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4789G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.114G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1513G>A
  hgvsp: ENSP00000354678.2:p.Val505Met
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val922Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

9-35090554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090554
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090554
    reference: chr 9
allele count: 4
allele frequency: 3.308847859175435e-5
allele num: 120888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4788C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1512C>T
  hgvsp: ENST00000361778.2:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2763C>T
  hgvsp: ENST00000378617.3:c.2763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3764C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.113C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1512C>T
  hgvsp: ENST00000298004.5:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2763C>T
  hgvsp: ENST00000341666.3:c.2763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe921Phe
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-35090563-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090563
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090563
    reference: chr 9
allele count: 2
allele frequency: 1.654204989082247e-5
allele num: 120904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3755T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.104T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1503T>A
  hgvsp: ENSP00000298004.5:p.His501Gln
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4779T>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2754T>A
  hgvsp: ENSP00000339382.3:p.His918Gln
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1503T>A
  hgvsp: ENSP00000354678.2:p.His501Gln
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2754T>A
  hgvsp: ENSP00000367880.3:p.His918Gln
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His918Gln
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

9-35090579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090579
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090579
    reference: chr 9
allele count: 2
allele frequency: 1.654423929587718e-5
allele num: 120888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3739C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2738C>T
  hgvsp: ENSP00000339382.3:p.Pro913Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1487C>T
  hgvsp: ENSP00000354678.2:p.Pro496Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2738C>T
  hgvsp: ENSP00000367880.3:p.Pro913Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4763C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1487C>T
  hgvsp: ENSP00000298004.5:p.Pro496Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.88C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro913Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/9-35090586-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090586
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090586
    reference: chr 9
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1480G>T
  hgvsp: ENSP00000298004.5:p.Val494Phe
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1480G>T
  hgvsp: ENSP00000354678.2:p.Val494Phe
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3732G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2731G>T
  hgvsp: ENSP00000339382.3:p.Val911Phe
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2731G>T
  hgvsp: ENSP00000367880.3:p.Val911Phe
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4756G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.81G>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val911Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

9-35090594-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090594
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090594
    reference: chr 9
allele count: 427
allele frequency: 3.792050015985223e-3
allele num: 112604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2723A>C
  hgvsp: ENSP00000339382.3:p.His908Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1472A>C
  hgvsp: ENSP00000298004.5:p.His491Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1472A>C
  hgvsp: ENSP00000354678.2:p.His491Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.73A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2723A>C
  hgvsp: ENSP00000367880.3:p.His908Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4748A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3724A>C
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 37400
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 6
hgvs: p.His908Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

9-35090595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090595
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090595
    reference: chr 9
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2722C>T
  hgvsp: ENSP00000339382.3:p.His908Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1471C>T
  hgvsp: ENSP00000354678.2:p.His491Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1471C>T
  hgvsp: ENSP00000298004.5:p.His491Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.72C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2722C>T
  hgvsp: ENSP00000367880.3:p.His908Tyr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3723C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4747C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46172
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His908Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

9-35090597-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090597
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090597
    reference: chr 9
allele count: 12
allele frequency: 9.97423323082038e-5
allele num: 120310
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2720G>C
  hgvsp: ENSP00000367880.3:p.Gly907Ala
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2720G>C
  hgvsp: ENSP00000339382.3:p.Gly907Ala
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1469G>C
  hgvsp: ENSP00000354678.2:p.Gly490Ala
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1469G>C
  hgvsp: ENSP00000298004.5:p.Gly490Ala
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.70G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4745G>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3721G>C
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly907Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-35090601-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090601
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090601
    reference: chr 9
allele count: 4
allele frequency: 3.321872871925191e-5
allele num: 120414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.66A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1465A>C
  hgvsp: ENSP00000298004.5:p.Thr489Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4741A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1465A>C
  hgvsp: ENSP00000354678.2:p.Thr489Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2716A>C
  hgvsp: ENSP00000367880.3:p.Thr906Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3717A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2716A>C
  hgvsp: ENSP00000339382.3:p.Thr906Pro
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr906Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-35090612-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090612
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090612
    reference: chr 9
allele count: 7
allele frequency: 5.81588567630442e-5
allele num: 120360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4730C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1454C>G
  hgvsp: ENSP00000354678.2:p.Thr485Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2705C>G
  hgvsp: ENSP00000339382.3:p.Thr902Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.55C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1454C>G
  hgvsp: ENSP00000298004.5:p.Thr485Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2705C>G
  hgvsp: ENSP00000367880.3:p.Thr902Ser
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3706C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37467
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr902Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-35090614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090614
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090614
    reference: chr 9
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2703G>A
  hgvsp: ENST00000341666.3:c.2703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1452G>A
  hgvsp: ENST00000298004.5:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1452G>A
  hgvsp: ENST00000361778.2:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3704G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4728G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2703G>A
  hgvsp: ENST00000378617.3:c.2703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.53G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln901Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

9-35090617-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090617
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090617
    reference: chr 9
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1449A>C
  hgvsp: ENST00000298004.5:c.1449A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2700A>C
  hgvsp: ENST00000378617.3:c.2700A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.50A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3701A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1449A>C
  hgvsp: ENST00000361778.2:c.1449A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4725A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2700A>C
  hgvsp: ENST00000341666.3:c.2700A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr900Thr
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

9-35090618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090618
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090618
    reference: chr 9
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.49C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3700C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2699C>T
  hgvsp: ENSP00000367880.3:p.Thr900Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1448C>T
  hgvsp: ENSP00000298004.5:p.Thr483Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4724C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1448C>T
  hgvsp: ENSP00000354678.2:p.Thr483Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2699C>T
  hgvsp: ENSP00000339382.3:p.Thr900Ile
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr900Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

9-35090621-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090621
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090621
    reference: chr 9
allele count: 4
allele frequency: 3.329892444474044e-5
allele num: 120124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1445C>G
  hgvsp: ENSP00000298004.5:p.Ala482Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1445C>G
  hgvsp: ENSP00000354678.2:p.Ala482Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4721C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3697C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2696C>G
  hgvsp: ENSP00000339382.3:p.Ala899Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2696C>G
  hgvsp: ENSP00000367880.3:p.Ala899Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.46C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala899Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/9-35090623-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090623
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090623
    reference: chr 9
allele count: 7
allele frequency: 5.830903790087464e-5
allele num: 120050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2694G>T
  hgvsp: ENSP00000339382.3:p.Met898Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4719G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2694G>T
  hgvsp: ENSP00000367880.3:p.Met898Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1443G>T
  hgvsp: ENSP00000298004.5:p.Met481Ile
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3695G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.44G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1443G>T
  hgvsp: ENSP00000354678.2:p.Met481Ile
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met898Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-35090625-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090625
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090625
    reference: chr 9
allele count: 35
allele frequency: 2.928135196185058e-4
allele num: 119530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.42A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1441A>C
  hgvsp: ENSP00000354678.2:p.Met481Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2692A>C
  hgvsp: ENSP00000367880.3:p.Met898Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1441A>C
  hgvsp: ENSP00000298004.5:p.Met481Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4717A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3693A>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2692A>C
  hgvsp: ENSP00000339382.3:p.Met898Leu
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43898
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 3
hgvs: p.Met898Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-35090626-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090626
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090625
    reference: chr 9
allele count: 2
allele frequency: 1.668307168715904e-5
allele num: 119882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.40delT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4715delT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2690delT
  hgvsp: ENSP00000367880.3:p.Leu897ProfsTer42
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1439delT
  hgvsp: ENSP00000298004.5:p.Leu480ProfsTer42
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1439delT
  hgvsp: ENSP00000354678.2:p.Leu480ProfsTer42
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3691delT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2690delT
  hgvsp: ENSP00000339382.3:p.Leu897ProfsTer42
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu897ProfsTer42
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GA
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-35090627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090627
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090627
    reference: chr 9
allele count: 74
allele frequency: 6.29412265033597e-4
allele num: 117570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4715T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3691T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.40T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1439T>C
  hgvsp: ENSP00000298004.5:p.Leu480Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2690T>C
  hgvsp: ENSP00000367880.3:p.Leu897Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2690T>C
  hgvsp: ENSP00000339382.3:p.Leu897Pro
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1439T>C
  hgvsp: ENSP00000354678.2:p.Leu480Pro
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.25e1
  variant carriers: 3
hgvs: p.Leu897Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

9-35090630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090630
    reference: chr 9
allele count: 3
allele frequency: 2.526188150493449e-5
allele num: 118756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1436C>T
  hgvsp: ENSP00000298004.5:p.Ala479Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3688C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2687C>T
  hgvsp: ENSP00000339382.3:p.Ala896Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1436C>T
  hgvsp: ENSP00000354678.2:p.Ala479Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2687C>T
  hgvsp: ENSP00000367880.3:p.Ala896Val
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.37C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4712C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala896Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

9-35090630-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090630
    reference: chr 9
allele count: 60
allele frequency: 5.052376300986898e-4
allele num: 118756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1436C>G
  hgvsp: ENSP00000298004.5:p.Ala479Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.37C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2687C>G
  hgvsp: ENSP00000367880.3:p.Ala896Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1436C>G
  hgvsp: ENSP00000354678.2:p.Ala479Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3688C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2687C>G
  hgvsp: ENSP00000339382.3:p.Ala896Gly
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4712C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 35192
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 3
hgvs: p.Ala896Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

9-35090631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090631
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090631
    reference: chr 9
allele count: 1
allele frequency: 8.362043014349267e-6
allele num: 119588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.36G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1435G>A
  hgvsp: ENSP00000298004.5:p.Ala479Thr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1435G>A
  hgvsp: ENSP00000354678.2:p.Ala479Thr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2686G>A
  hgvsp: ENSP00000367880.3:p.Ala896Thr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2686G>A
  hgvsp: ENSP00000339382.3:p.Ala896Thr
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3687G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4711G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala896Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/9-35090633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090633
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090633
    reference: chr 9
allele count: 2369
allele frequency: 2.850644974971121e-2
allele num: 83104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2684G>T
  hgvsp: ENSP00000339382.3:p.Trp895Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3685G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.34G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2684G>T
  hgvsp: ENSP00000367880.3:p.Trp895Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1433G>T
  hgvsp: ENSP00000354678.2:p.Trp478Leu
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4709G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1433G>T
  hgvsp: ENSP00000298004.5:p.Trp478Leu
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 6.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 22937
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 4.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 6.25e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 5.75e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.75e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 5.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 16023
  bin: 2.5e0
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 874
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 1.25e1
  variant carriers: 135
hgvs: p.Trp895Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/9-35090633-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090633
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090634
    reference: chr 9
allele count: 18
allele frequency: 2.165960723912206e-4
allele num: 83104
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1432dupT
  hgvsp: ENSP00000354678.2:p.Trp478LeufsTer71
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.33dupT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4708dupT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1432dupT
  hgvsp: ENSP00000298004.5:p.Trp478LeufsTer71
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3684dupT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2683dupT
  hgvsp: ENSP00000339382.3:p.Trp895LeufsTer71
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2683dupT
  hgvsp: ENSP00000367880.3:p.Trp895LeufsTer71
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28674
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Trp895LeufsTer71
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

9-35090635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090635
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090635
    reference: chr 9
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2682T>C
  hgvsp: ENST00000378617.3:c.2682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2682T>C
  hgvsp: ENST00000341666.3:c.2682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1431T>C
  hgvsp: ENST00000361778.2:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1431T>C
  hgvsp: ENST00000298004.5:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4707T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.32T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3683T>C
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala894Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum

9-35090638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090638
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090638
    reference: chr 9
allele count: 2
allele frequency: 1.657385308936622e-5
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2679G>A
  hgvsp: ENST00000378617.3:c.2679G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3680G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.29G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2679G>A
  hgvsp: ENST00000341666.3:c.2679G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4704G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1428G>A
  hgvsp: ENST00000361778.2:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1428G>A
  hgvsp: ENST00000298004.5:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser893Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

9-35090644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090644
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090644
    reference: chr 9
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3674A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1422A>G
  hgvsp: ENST00000361778.2:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2673A>G
  hgvsp: ENST00000378617.3:c.2673A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2673A>G
  hgvsp: ENST00000341666.3:c.2673A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1422A>G
  hgvsp: ENST00000298004.5:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4698A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.23A>G
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49591
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala891Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

9-35090653-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090653
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090653
    reference: chr 9
allele count: 2
allele frequency: 1.65953068472236e-5
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2664A>G
  hgvsp: ENST00000341666.3:c.2664A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3665A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4689A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.14A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2664A>G
  hgvsp: ENST00000378617.3:c.2664A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1413A>G
  hgvsp: ENST00000361778.2:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1413A>G
  hgvsp: ENST00000298004.5:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro888Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

9-35090659-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090659
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090659
    reference: chr 9
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3659T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1407T>C
  hgvsp: ENST00000298004.5:c.1407T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4683T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2658T>C
  hgvsp: ENST00000378617.3:c.2658T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2658T>C
  hgvsp: ENST00000341666.3:c.2658T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  hgvsc: ENST00000491687.1:n.8T>C
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1407T>C
  hgvsp: ENST00000361778.2:c.1407T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr886Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

9-35090661-TAAAAGGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090661
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090654
    reference: chr 9
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1398_1404delTCCTTTT
  hgvsp: ENSP00000298004.5:p.Pro467LeufsTer53
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000491687
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2649_2655delTCCTTTT
  hgvsp: ENSP00000339382.3:p.Pro884LeufsTer53
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4674_4680delTCCTTTT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3650_3656delTCCTTTT
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2649_2655delTCCTTTT
  hgvsp: ENSP00000367880.3:p.Pro884LeufsTer53
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1398_1404delTCCTTTT
  hgvsp: ENSP00000354678.2:p.Pro467LeufsTer53
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5705
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro884LeufsTer53
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: TAAAAGGA
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

9-35090669-CCTGGAAGAAAAGAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090669
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090655
    reference: chr 9
allele count: 1
allele frequency: 8.351986102295126e-6
allele num: 119732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2648-14_2648-1delATCTTTTCTTCCAG
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: CCTGGAAGAAAAGAT
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-35090670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090670
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090670
    reference: chr 9
allele count: 1
allele frequency: 8.360644772924887e-6
allele num: 119608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-1G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-1G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4672G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-1G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-1G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-1G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2648-1G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-35090676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090676
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090676
    reference: chr 9
allele count: 2
allele frequency: 1.686369078736572e-5
allele num: 118598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-7C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-7C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-7C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-7C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-7C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4666C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21102
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2648-7C>T
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-35090685-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090685
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090685
    reference: chr 9
allele count: 4
allele frequency: 3.438139279022193e-5
allele num: 116342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-16A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-16A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-16A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-16A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4657A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-16A>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21680
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

9-35090686-GCCACGTTACAGTCACTTCTTAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090686
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090664
    reference: chr 9
allele count: 1
allele frequency: 8.612225915910226e-6
allele num: 116114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: GCCACGTTACAGTCACTTCTTAT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

9-35090690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090690
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090690
    reference: chr 9
allele count: 6
allele frequency: 5.217663530271145e-5
allele num: 114994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-21G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-21G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4652G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-21G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-21G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-21G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19398
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

9-35090691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090691
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090691
    reference: chr 9
allele count: 2
allele frequency: 1.744683078318823e-5
allele num: 114634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-22C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-22C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-22C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-22C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-22C>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4651C>T
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

9-35090691-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090691
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090691
    reference: chr 9
allele count: 1
allele frequency: 8.723415391594117e-6
allele num: 114634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-22C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4651C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-22C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-22C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-22C>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-22C>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9907
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

9-35090696-AGTCAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090696
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090691
    reference: chr 9
allele count: 3
allele frequency: 2.632687447346251e-5
allele num: 113952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4641_4645delGTGAC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-32_1397-28delGTGAC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-32_2648-28delGTGAC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-32_1397-28delGTGAC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-32_3649-28delGTGAC
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-32_2648-28delGTGAC
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16745
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: AGTCAC
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

9-35090698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090698
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090698
    reference: chr 9
allele count: 1
allele frequency: 8.818808755313333e-6
allele num: 113394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-29A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-29A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-29A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-29A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-29A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4644A>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

9-35090701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090701
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090701
    reference: chr 9
allele count: 3
allele frequency: 2.66080107851137e-5
allele num: 112748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-32G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4641G>A
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-32G>A
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17034
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-35090720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090720
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35090720
    reference: chr 9
allele count: 1601
allele frequency: 1.53358366220928e-2
allele num: 104396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1397-51A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2648-51A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2648-51A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1397-51A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3649-51A>G
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4622A>G
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 1.75e1
  variant carriers: 544
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.25e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 7.5e0
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 1.25e1
  variant carriers: 482
genotype quality: GenotypeQuality
  all individuals: 7974
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 9035
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 9026
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 16
num of homozygotes: 52
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-35091186-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35091186
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 35091186
    reference: chr 9
allele count: 1
allele frequency: 9.111617312072893e-6
allele num: 109750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000465745
  gene symbol: PIGO
  hgvsc: ENST00000465745.2:n.3648+51G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165282
  ensembl transcript: ENST00000474436
  gene symbol: PIGO
  hgvsc: ENST00000474436.1:n.4156G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000298004
  ensembl transcript: ENST00000298004
  gene symbol: PIGO
  hgvsc: ENST00000298004.5:c.1396+51G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000354678
  ensembl transcript: ENST00000361778
  gene symbol: PIGO
  hgvsc: ENST00000361778.2:c.1396+51G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000339382
  ensembl transcript: ENST00000341666
  gene symbol: PIGO
  hgvsc: ENST00000341666.3:c.2647+51G>T
  variant of: http://identifiers.org/hgnc/23215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165282
  ensembl protein: ENSP00000367880
  ensembl transcript: ENST00000378617
  gene symbol: PIGO
  hgvsc: ENST00000378617.3:c.2647+51G>T
  variant of: http://identifiers.org/hgnc/23215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.64439421618107e-5
allele num: 64594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.036e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.046e1

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.630073e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 2624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552457540286273e-5
allele num: 64414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e0

VQSLOD
type: SiteQuality
SIO_000300: -3.662e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.165e0

DP
type: SiteQuality
SIO_000300: 1.624401e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.836e0

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
all individuals: 800
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63168
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.375924509053813e-5
allele num: 15684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.528322e6

QD
type: SiteQuality
SIO_000300: 1.144e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.878e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 30905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 11
allele frequency: 7.055805003207184e-4
allele num: 15590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.488669e6

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

GenotypeQuality
all individuals: 1904
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6268
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595812587769692e-5
allele num: 62664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.453445e6

QD
type: SiteQuality
SIO_000300: 4.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

FS
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
all individuals: 1092
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 917
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26393
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.124353496739375e-4
allele num: 8894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62380
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

QD
type: SiteQuality
SIO_000300: 1.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.423e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 3.933e0

DP
type: SiteQuality
SIO_000300: 1.413457e6

GenotypeQuality
all individuals: 1336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4903
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.963607802068334e-4
allele num: 15278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.141813199360585e-4
allele num: 8758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 1.34892e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.052e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 1557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7324
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.749460043196545e-5
allele num: 14816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

FS
type: SiteQuality
SIO_000300: 3.388e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.21756e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
all individuals: 549
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6801
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.225092250922509e-5
allele num: 10840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.091e0

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

QD
type: SiteQuality
SIO_000300: 7.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.198294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.085e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.898e0

GenotypeQuality
all individuals: 3359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6846
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5605
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.276437847866419e-5
allele num: 10780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.769e0

VQSLOD
type: SiteQuality
SIO_000300: -7.17e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.999e0

DP
type: SiteQuality
SIO_000300: 1.197029e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 7.9684e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 1167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2684
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.089305937550558e-5
allele num: 12362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45106
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.0728e5

VQSLOD
type: SiteQuality
SIO_000300: -3.531e-1

FS
type: SiteQuality
SIO_000300: 7.402e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.088e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.635e0

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.598976654940838e-4
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.216508555723025e-5
allele num: 45116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.17429e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1912
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7422
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.219066216935913e-5
allele num: 45064
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.318e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

QD
type: SiteQuality
SIO_000300: 1.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.412e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 8.2155e5

GenotypeQuality
all individuals: 1306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.326963906581741e-4
allele num: 7536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

DP
type: SiteQuality
SIO_000300: 9.17213e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 963
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.497375918428549e-5
allele num: 13338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 1.003633e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.34e-2

QD
type: SiteQuality
SIO_000300: 1.612e1

MQ
type: SiteQuality
SIO_000300: 5.485e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.424e0

GenotypeQuality
all individuals: 27192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51860
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.678727386150967e-4
allele num: 6412
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 2.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

DP
type: SiteQuality
SIO_000300: 1.066506e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 14533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.915488641152358e-5
allele num: 52206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.07904e6

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29316
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13984
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.711034141514102e-4
allele num: 8084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53032
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.358e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.100649e6

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 1.181e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 158
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13747
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.451350128224468e-4
allele num: 53032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.151029748283753e-5
allele num: 13984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

DP
type: SiteQuality
SIO_000300: 1.100649e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.358e0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.844626967830253e-5
allele num: 14610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

DP
type: SiteQuality
SIO_000300: 1.188185e6

QD
type: SiteQuality
SIO_000300: 1.346e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.008e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.42383675146369e-5
allele num: 58414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

DP
type: SiteQuality
SIO_000300: 1.233662e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.521e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.845e1

FS
type: SiteQuality
SIO_000300: 4.447e0

MQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.941747572815534e-4
allele num: 15450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.015e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

DP
type: SiteQuality
SIO_000300: 1.303732e6

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591647036353218e-5
allele num: 62828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.346356e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.149e1

FS
type: SiteQuality
SIO_000300: 5.798e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.195e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 1622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.971220185294697e-4
allele num: 10146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.287e0

DP
type: SiteQuality
SIO_000300: 1.404728e6

FS
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.961e-1

GenotypeQuality
all individuals: 5415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47233
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.103888176768602e-5
allele num: 65532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.622e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

DP
type: SiteQuality
SIO_000300: 1.427272e6

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518695137138171e-5
allele num: 65846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.939e0

VQSLOD
type: SiteQuality
SIO_000300: -3.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e0

DP
type: SiteQuality
SIO_000300: 1.439464e6

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.08e0

FS
type: SiteQuality
SIO_000300: 3.939e0

DP
type: SiteQuality
SIO_000300: 1.441006e6

QD
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.201e0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 2.113e0

QD
type: SiteQuality
SIO_000300: 1.251e1

DP
type: SiteQuality
SIO_000300: 1.45611e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
all individuals: 5741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.409e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.457487e6

FS
type: SiteQuality
SIO_000300: 1.047e0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.218e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e0

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 1.457595e6

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5749
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.932740626207963e-4
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012864933265042e-5
allele num: 66382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 5.865e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.089e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.457906e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5755
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.324e0

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.836e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

FS
type: SiteQuality
SIO_000300: 9.615e0

DP
type: SiteQuality
SIO_000300: 1.458055e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506387081224391e-5
allele num: 66384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.449e1

VQSLOD
type: SiteQuality
SIO_000300: -8.550000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.457476e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.405e0

FS
type: SiteQuality
SIO_000300: 3.129e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.456352e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.432e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.347e0

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1524
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 338

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1542
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 924
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 43986
bin: 6.25e1
variant carriers: 2

Latino
type: Population
allele count: 8
allele frequency: 7.075888908544136e-4
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 90
allele frequency: 1.69045830202855e-2
allele num: 5324
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.275510204081633e-3
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.915250179554704e-3
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 254
allele frequency: 4.13775127879321e-3
allele num: 61386
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 5.989352262644188e-3
allele num: 9016
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433978337592795e-4
allele num: 16434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.16649e2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e0

VQSLOD
type: SiteQuality
SIO_000300: -2.227e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.598e0

DP
type: SiteQuality
SIO_000300: 1.590922e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512447442451375e-5
allele num: 66118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.48256e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.686e0

FS
type: SiteQuality
SIO_000300: 3.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.005e1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.088705768298594e-5
allele num: 66016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.664009809932557e-4
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.9379e1

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.502e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.004e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.767e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 4.02e0

DP
type: SiteQuality
SIO_000300: 1.477314e6

GenotypeQuality
all individuals: 46195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1073
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1796
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-5
allele num: 66060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.922837100545596e-4
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 4.88e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

DP
type: SiteQuality
SIO_000300: 1.475301e6

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.060381131275184e-4
allele num: 66014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 9.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.471143e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

GenotypeQuality
all individuals: 5726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-5
allele num: 66000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.891e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.470231e6

VQSLOD
type: SiteQuality
SIO_000300: -6.755e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.18e0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515335192144502e-5
allele num: 65992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

VQSLOD
type: SiteQuality
SIO_000300: -3.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.468998e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

DP
type: SiteQuality
SIO_000300: 1.467826e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
SIO_000300: 9.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 6.866e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: -1.57e0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518141794443601e-5
allele num: 65870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.467215e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.339e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 2.0e1

QD
type: SiteQuality
SIO_000300: 7.07e0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 302
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 792
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44115
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 772
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.798157946306095e-5
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518971959777622e-5
allele num: 65834
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.330459100442787e-4
allele num: 8582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: -1.981e0

FS
type: SiteQuality
SIO_000300: 2.292e0

QD
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 1.467982e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 776
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 730
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1048
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.128306476132563e-4
allele num: 65780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.626016260162602e-4
allele num: 6150
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.924646781789639e-4
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.566881196729866e-4
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.838393274170948e-4
allele num: 8564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.343e1

DP
type: SiteQuality
SIO_000300: 1.476763e6

QD
type: SiteQuality
SIO_000300: 2.13e0

FS
type: SiteQuality
SIO_000300: 6.976900000000001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529051987767584e-4
allele num: 6540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 2.3802e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: -3.208e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.47763e6

GenotypeQuality
all individuals: 1523
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 307
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 827
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 935
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1574
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42087
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 6.970722963553077e-4
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.998523622047244e-4
allele num: 65024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.555478741790529e-3
allele num: 5786
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.450024142926122e-4
allele num: 8284
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.961133891959351e-3
allele num: 11218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.833740831295844e-4
allele num: 16360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

DP
type: SiteQuality
SIO_000300: 1.517162e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 4.4933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.02e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41656
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.221649484536082e-4
allele num: 6208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530362389813908e-5
allele num: 65344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e0

DP
type: SiteQuality
SIO_000300: 1.544735e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: -2.25e1

FS
type: SiteQuality
SIO_000300: 6.3312e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 1139
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 403
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 677
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 41656
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 2

South Asian
type: Population
allele count: 4
allele frequency: 2.438132390588809e-4
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.411432604093155e-3
allele num: 11336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.221649484536082e-4
allele num: 6208
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.961018297533811e-4
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.290776812954705e-3
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.060724779627816e-4
allele num: 65344
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.544735e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 6.3312e1

QD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 4.41e0

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.554832e6

GenotypeQuality
all individuals: 977
bin: 7.5e0
variant carriers: 149

GenotypeQuality
all individuals: 1078
bin: 3.75e1
variant carriers: 126

GenotypeQuality
all individuals: 970
bin: 4.75e1
variant carriers: 113

GenotypeQuality
all individuals: 956
bin: 4.25e1
variant carriers: 131

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 77

GenotypeQuality
all individuals: 538
bin: 7.25e1
variant carriers: 91

GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 65

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 64

GenotypeQuality
all individuals: 1013
bin: 3.25e1
variant carriers: 107

GenotypeQuality
all individuals: 1000
bin: 1.75e1
variant carriers: 154

GenotypeQuality
all individuals: 28674
bin: 6.25e1
variant carriers: 89

European (Non-Finnish)
type: Population
allele count: 950
allele frequency: 1.93522102261153e-2
allele num: 49090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 160
allele frequency: 6.980802792321117e-2
allele num: 2292
num of homozygotes: 0

Latino
type: Population
allele count: 532
allele frequency: 8.93516963385959e-2
allele num: 5954
num of homozygotes: 0

South Asian
type: Population
allele count: 76
allele frequency: 5.383198753364499e-3
allele num: 14118
num of homozygotes: 0

African
type: Population
allele count: 276
allele frequency: 4.560475875743556e-2
allele num: 6052
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 2.702702702702703e-2
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 359
allele frequency: 7.171394326807831e-2
allele num: 5006
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 2.341114e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.019e1

QD
type: SiteQuality
SIO_000300: 9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.344e0

VQSLOD
type: SiteQuality
SIO_000300: -6.385e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 8.1806e1

GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1000
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 903
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16023
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1262
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 970
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 4.957038995373431e-4
allele num: 6052
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.175680214981525e-3
allele num: 5954
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.997602876548142e-4
allele num: 5006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.148299042574862e-5
allele num: 49090
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.083156254426973e-5
allele num: 14118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 8.726003490401396e-4
allele num: 2292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.341114e6

MQ
type: SiteQuality
SIO_000300: 6.019e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.344e0

QD
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.385e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 8.1806e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.999e0

GenotypeQuality
all individuals: 248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508887346470713e-5
allele num: 66274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 1.569134e6

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.149e1

QD
type: SiteQuality
SIO_000300: 1.82e1

FS
type: SiteQuality
SIO_000300: 2.928e0

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.578e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 6.029e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

DP
type: SiteQuality
SIO_000300: 1.571515e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

FS
type: SiteQuality
SIO_000300: 1.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.942e-1

MQ
type: SiteQuality
SIO_000300: 6.047e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 1.571268e6

QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 1.569162e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.654e0

FS
type: SiteQuality
SIO_000300: 4.307e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

GenotypeQuality
all individuals: 1148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511898642315019e-5
allele num: 66142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.56496e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 7.01e0

QD
type: SiteQuality
SIO_000300: 9.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49197
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513821187441339e-5
allele num: 66058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

DP
type: SiteQuality
SIO_000300: 1.561432e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.111e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.061e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e0

DP
type: SiteQuality
SIO_000300: 1.547766e6

MQ
type: SiteQuality
SIO_000300: 6.127e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 4.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 1742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.545262e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.361e0

VQSLOD
type: SiteQuality
SIO_000300: -3.059e0

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 3.792e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 3.034e1

GenotypeQuality
all individuals: 443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.838646202282565e-5
allele num: 10164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532097441397273e-5
allele num: 65270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 6.155e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

DP
type: SiteQuality
SIO_000300: 1.515023e6

QD
type: SiteQuality
SIO_000300: 1.034e1

FS
type: SiteQuality
SIO_000300: 2.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeQuality
all individuals: 421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.408477842003854e-4
allele num: 8304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.118470701967755e-5
allele num: 64134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.42274e6

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.487e0

FS
type: SiteQuality
SIO_000300: 2.762e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562158277876714e-5
allele num: 64014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.407806e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.145e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.817e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 3.03e0

MQ
type: SiteQuality
SIO_000300: 5.152e1

GenotypeQuality
all individuals: 35567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575944778894947e-5
allele num: 63454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.119095385737735e-5
allele num: 10966
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.020100502512563e-4
allele num: 9950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 1.354e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.337112e6

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.229709788489916e-4
allele num: 8132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581177661122004e-5
allele num: 63244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.516e0

QD
type: SiteQuality
SIO_000300: 8.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

VQSLOD
type: SiteQuality
SIO_000300: -6.55e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.318855e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeQuality
all individuals: 34289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581177661122004e-5
allele num: 63244
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 1.516e0

DP
type: SiteQuality
SIO_000300: 1.318855e6

QD
type: SiteQuality
SIO_000300: 8.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

VQSLOD
type: SiteQuality
SIO_000300: -6.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 2
allele frequency: 2.48015873015873e-4
allele num: 8064
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.583278472679394e-5
allele num: 15190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.146e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.852e0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e0

DP
type: SiteQuality
SIO_000300: 1.242642e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

GenotypeQuality
all individuals: 12362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597648261758691e-5
allele num: 62592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.19598e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

QD
type: SiteQuality
SIO_000300: 2.591e1

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7107
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.816801001894608e-5
allele num: 62282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.778e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

FS
type: SiteQuality
SIO_000300: 2.063e0

DP
type: SiteQuality
SIO_000300: 1.159849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

QD
type: SiteQuality
SIO_000300: 1.594e1

GenotypeQuality
all individuals: 3367
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1265
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1286
bin: 6.75e1
variant carriers: 17

GenotypeQuality
all individuals: 5310
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4319
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2103
bin: 9.75e1
variant carriers: 1453

Other
type: Population
allele count: 4
allele frequency: 5.076142131979695e-3
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 676
allele frequency: 5.020050497549384e-2
allele num: 13466
num of homozygotes: 22

African
type: Population
allele count: 722
allele frequency: 7.698869695030923e-2
allele num: 9378
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

East Asian
type: Population
allele count: 74
allele frequency: 1.024363233665559e-2
allele num: 7224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.345709257789586e-3
allele num: 57962
num of homozygotes: 0

Latino
type: Population
allele count: 47
allele frequency: 4.802779480891069e-3
allele num: 9786
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

DP
type: SiteQuality
SIO_000300: 1.049824e6

QD
type: SiteQuality
SIO_000300: 1.616e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1