4-169611765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611765
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611765
    reference: chr 4
allele count: 1409
allele frequency: 1.162023520873538e-2
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.201C>T
  hgvsp: ENST00000504519.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1347C>T
  hgvsp: ENST00000261509.6:c.1347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000422016
  ensembl transcript: ENST00000513245
  gene symbol: PALLD
  hgvsc: ENST00000513245.1:c.201C>T
  hgvsp: ENST00000513245.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1284C>T
  hgvsp: ENST00000508898.1:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.201C>T
  hgvsp: ENST00000503457.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1347C>T
  hgvsp: ENST00000505667.1:c.1347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.201C>T
  hgvsp: ENST00000335742.7:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.201C>T
  hgvsp: ENST00000512127.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.978C>T
  hgvsp: ENST00000333488.4:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 9.75e1
  variant carriers: 981
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn449Asn
num of homozygotes: 85
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

4-169611771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611771
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611771
    reference: chr 4
allele count: 4
allele frequency: 3.297881111385935e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1353C>T
  hgvsp: ENST00000261509.6:c.1353C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.984C>T
  hgvsp: ENST00000333488.4:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.207C>T
  hgvsp: ENST00000504519.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.207C>T
  hgvsp: ENST00000335742.7:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000422016
  ensembl transcript: ENST00000513245
  gene symbol: PALLD
  hgvsc: ENST00000513245.1:c.207C>T
  hgvsp: ENST00000513245.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1290C>T
  hgvsp: ENST00000508898.1:c.1290C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1353C>T
  hgvsp: ENST00000505667.1:c.1353C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.207C>T
  hgvsp: ENST00000512127.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.207C>T
  hgvsp: ENST00000503457.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala451Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-169611772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611772
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611772
    reference: chr 4
allele count: 4
allele frequency: 3.297065611605671e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1354G>A
  hgvsp: ENSP00000425556.1:p.Val452Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.208G>A
  hgvsp: ENSP00000424121.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.208G>A
  hgvsp: ENSP00000424288.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.208G>A
  hgvsp: ENSP00000426947.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1354G>A
  hgvsp: ENSP00000261509.6:p.Val452Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1291G>A
  hgvsp: ENSP00000423063.1:p.Val431Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000422016
  ensembl transcript: ENST00000513245
  gene symbol: PALLD
  hgvsc: ENST00000513245.1:c.208G>A
  hgvsp: ENSP00000422016.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.208G>A
  hgvsp: ENSP00000336735.7:p.Val70Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.985G>A
  hgvsp: ENSP00000328945.4:p.Val329Met
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val452Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-169611776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611776
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611776
    reference: chr 4
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000422016
  ensembl transcript: ENST00000513245
  gene symbol: PALLD
  hgvsc: ENST00000513245.1:c.212C>T
  hgvsp: ENSP00000422016.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.212C>T
  hgvsp: ENSP00000424121.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1358C>T
  hgvsp: ENSP00000261509.6:p.Ala453Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1358C>T
  hgvsp: ENSP00000425556.1:p.Ala453Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1295C>T
  hgvsp: ENSP00000423063.1:p.Ala432Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.212C>T
  hgvsp: ENSP00000424288.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.989C>T
  hgvsp: ENSP00000328945.4:p.Ala330Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.212C>T
  hgvsp: ENSP00000336735.7:p.Ala71Val
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.212C>T
  hgvsp: ENSP00000426947.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala453Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

4-169611777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611777
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611777
    reference: chr 4
allele count: 4
allele frequency: 3.296250515039143e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.990G>A
  hgvsp: ENST00000333488.4:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000422016
  ensembl transcript: ENST00000513245
  gene symbol: PALLD
  hgvsc: ENST00000513245.1:c.213G>A
  hgvsp: ENST00000513245.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.213G>A
  hgvsp: ENST00000503457.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.213G>A
  hgvsp: ENST00000504519.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.213G>A
  hgvsp: ENST00000335742.7:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1359G>A
  hgvsp: ENST00000505667.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1359G>A
  hgvsp: ENST00000261509.6:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.213G>A
  hgvsp: ENST00000512127.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1296G>A
  hgvsp: ENST00000508898.1:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51078
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala453Ala
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

4-169611781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611781
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611781
    reference: chr 4
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1300G>A
  hgvsp: ENSP00000423063.1:p.Gly434Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.217G>A
  hgvsp: ENSP00000426947.1:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1363G>A
  hgvsp: ENSP00000425556.1:p.Gly455Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.994G>A
  hgvsp: ENSP00000328945.4:p.Gly332Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1363G>A
  hgvsp: ENSP00000261509.6:p.Gly455Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.217G>A
  hgvsp: ENSP00000424288.1:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.217G>A
  hgvsp: ENSP00000424121.1:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.217G>A
  hgvsp: ENSP00000336735.7:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly455Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

4-169611782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611782
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611782
    reference: chr 4
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1364G>A
  hgvsp: ENSP00000425556.1:p.Gly455Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.218G>A
  hgvsp: ENSP00000426947.1:p.Gly73Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.218G>A
  hgvsp: ENSP00000424121.1:p.Gly73Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.218G>A
  hgvsp: ENSP00000336735.7:p.Gly73Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1301G>A
  hgvsp: ENSP00000423063.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.218G>A
  hgvsp: ENSP00000424288.1:p.Gly73Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1364G>A
  hgvsp: ENSP00000261509.6:p.Gly455Asp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.995G>A
  hgvsp: ENSP00000328945.4:p.Gly332Asp
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly455Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

4-169611790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611790
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611790
    reference: chr 4
allele count: 9
allele frequency: 7.413386929375134e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.226G>A
  hgvsp: ENSP00000424121.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1309G>A
  hgvsp: ENSP00000423063.1:p.Val437Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.226G>A
  hgvsp: ENSP00000336735.7:p.Val76Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1003G>A
  hgvsp: ENSP00000328945.4:p.Val335Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1372G>A
  hgvsp: ENSP00000261509.6:p.Val458Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.226G>A
  hgvsp: ENSP00000424288.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.226G>A
  hgvsp: ENSP00000426947.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1372G>A
  hgvsp: ENSP00000425556.1:p.Val458Met
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val458Met
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

4-169611804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611804
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611804
    reference: chr 4
allele count: 8
allele frequency: 6.589351607801793e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1386C>T
  hgvsp: ENST00000261509.6:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1323C>T
  hgvsp: ENST00000508898.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.240C>T
  hgvsp: ENST00000512127.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1017C>T
  hgvsp: ENST00000333488.4:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.240C>T
  hgvsp: ENST00000504519.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.240C>T
  hgvsp: ENST00000335742.7:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1386C>T
  hgvsp: ENST00000505667.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.240C>T
  hgvsp: ENST00000503457.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys462Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

4-169611805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611805
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611805
    reference: chr 4
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1387C>T
  hgvsp: ENSP00000261509.6:p.Arg463Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.241C>T
  hgvsp: ENSP00000426947.1:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1387C>T
  hgvsp: ENSP00000425556.1:p.Arg463Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.241C>T
  hgvsp: ENSP00000424288.1:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1018C>T
  hgvsp: ENSP00000328945.4:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.241C>T
  hgvsp: ENSP00000336735.7:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.241C>T
  hgvsp: ENSP00000424121.1:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1324C>T
  hgvsp: ENSP00000423063.1:p.Arg442Trp
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg463Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

4-169611806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611806
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611806
    reference: chr 4
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.242G>A
  hgvsp: ENSP00000424121.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1019G>A
  hgvsp: ENSP00000328945.4:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1388G>A
  hgvsp: ENSP00000425556.1:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.242G>A
  hgvsp: ENSP00000336735.7:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.242G>A
  hgvsp: ENSP00000424288.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1388G>A
  hgvsp: ENSP00000261509.6:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.242G>A
  hgvsp: ENSP00000426947.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1325G>A
  hgvsp: ENSP00000423063.1:p.Arg442Gln
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg463Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

4-169611812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611812
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611812
    reference: chr 4
allele count: 153
allele frequency: 1.260234255308634e-3
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.248G>A
  hgvsp: ENSP00000336735.7:p.Arg83His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.248G>A
  hgvsp: ENSP00000424288.1:p.Arg83His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1025G>A
  hgvsp: ENSP00000328945.4:p.Arg342His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.248G>A
  hgvsp: ENSP00000426947.1:p.Arg83His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1394G>A
  hgvsp: ENSP00000425556.1:p.Arg465His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1331G>A
  hgvsp: ENSP00000423063.1:p.Arg444His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.248G>A
  hgvsp: ENSP00000424121.1:p.Arg83His
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1394G>A
  hgvsp: ENSP00000261509.6:p.Arg465His
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 9.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg465His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

4-169611812-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611812
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611812
    reference: chr 4
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.248G>T
  hgvsp: ENSP00000336735.7:p.Arg83Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.248G>T
  hgvsp: ENSP00000426947.1:p.Arg83Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.248G>T
  hgvsp: ENSP00000424288.1:p.Arg83Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424121
  ensembl transcript: ENST00000504519
  gene symbol: PALLD
  hgvsc: ENST00000504519.1:c.248G>T
  hgvsp: ENSP00000424121.1:p.Arg83Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1331G>T
  hgvsp: ENSP00000423063.1:p.Arg444Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1025G>T
  hgvsp: ENSP00000328945.4:p.Arg342Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1394G>T
  hgvsp: ENSP00000425556.1:p.Arg465Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1394G>T
  hgvsp: ENSP00000261509.6:p.Arg465Leu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg465Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-169611817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611817
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611817
    reference: chr 4
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.253G>A
  hgvsp: ENSP00000426947.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.253G>A
  hgvsp: ENSP00000336735.7:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1399G>A
  hgvsp: ENSP00000425556.1:p.Ala467Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.253G>A
  hgvsp: ENSP00000424288.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1399G>A
  hgvsp: ENSP00000261509.6:p.Ala467Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1336G>A
  hgvsp: ENSP00000423063.1:p.Ala446Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1030G>A
  hgvsp: ENSP00000328945.4:p.Ala344Thr
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51059
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala467Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-169611824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611824
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611824
    reference: chr 4
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1037C>T
  hgvsp: ENSP00000328945.4:p.Pro346Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1343C>T
  hgvsp: ENSP00000423063.1:p.Pro448Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1406C>T
  hgvsp: ENSP00000425556.1:p.Pro469Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.260C>T
  hgvsp: ENSP00000336735.7:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.260C>T
  hgvsp: ENSP00000426947.1:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.260C>T
  hgvsp: ENSP00000424288.1:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1406C>T
  hgvsp: ENSP00000261509.6:p.Pro469Leu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro469Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

4-169611831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611831
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611831
    reference: chr 4
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.267G>A
  hgvsp: ENST00000503457.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1413G>A
  hgvsp: ENST00000505667.1:c.1413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.267G>A
  hgvsp: ENST00000335742.7:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1044G>A
  hgvsp: ENST00000333488.4:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1413G>A
  hgvsp: ENST00000261509.6:c.1413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1350G>A
  hgvsp: ENST00000508898.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.267G>A
  hgvsp: ENST00000512127.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51057
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln471Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-169611840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611840
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611840
    reference: chr 4
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.276G>T
  hgvsp: ENSP00000336735.7:p.Trp92Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1053G>T
  hgvsp: ENSP00000328945.4:p.Trp351Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1422G>T
  hgvsp: ENSP00000425556.1:p.Trp474Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.276G>T
  hgvsp: ENSP00000424288.1:p.Trp92Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.276G>T
  hgvsp: ENSP00000426947.1:p.Trp92Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1422G>T
  hgvsp: ENSP00000261509.6:p.Trp474Cys
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1359G>T
  hgvsp: ENSP00000423063.1:p.Trp453Cys
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51058
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp474Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

4-169611844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611844
    reference: chr 4
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1426C>T
  hgvsp: ENSP00000261509.6:p.Arg476Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.280C>T
  hgvsp: ENSP00000424288.1:p.Arg94Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1057C>T
  hgvsp: ENSP00000328945.4:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.280C>T
  hgvsp: ENSP00000336735.7:p.Arg94Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1363C>T
  hgvsp: ENSP00000423063.1:p.Arg455Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1426C>T
  hgvsp: ENSP00000425556.1:p.Arg476Trp
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.280C>T
  hgvsp: ENSP00000426947.1:p.Arg94Trp
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg476Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

4-169611845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611845
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611845
    reference: chr 4
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.281G>A
  hgvsp: ENSP00000426947.1:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.281G>A
  hgvsp: ENSP00000424288.1:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1364G>A
  hgvsp: ENSP00000423063.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1427G>A
  hgvsp: ENSP00000425556.1:p.Arg476Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1427G>A
  hgvsp: ENSP00000261509.6:p.Arg476Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1058G>A
  hgvsp: ENSP00000328945.4:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.281G>A
  hgvsp: ENSP00000336735.7:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg476Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

4-169611848-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611848
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611848
    reference: chr 4
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.284A>G
  hgvsp: ENSP00000424288.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1061A>G
  hgvsp: ENSP00000328945.4:p.Gln354Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1367A>G
  hgvsp: ENSP00000423063.1:p.Gln456Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.284A>G
  hgvsp: ENSP00000426947.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1430A>G
  hgvsp: ENSP00000425556.1:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1430A>G
  hgvsp: ENSP00000261509.6:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.284A>G
  hgvsp: ENSP00000336735.7:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln477Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

4-169611851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611851
    reference: chr 4
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.287G>A
  hgvsp: ENSP00000426947.1:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1370G>A
  hgvsp: ENSP00000423063.1:p.Gly457Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.287G>A
  hgvsp: ENSP00000336735.7:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1433G>A
  hgvsp: ENSP00000425556.1:p.Gly478Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000424288
  ensembl transcript: ENST00000503457
  gene symbol: PALLD
  hgvsc: ENST00000503457.1:c.287G>A
  hgvsp: ENSP00000424288.1:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1433G>A
  hgvsp: ENSP00000261509.6:p.Gly478Glu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1064G>A
  hgvsp: ENSP00000328945.4:p.Gly355Glu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51055
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly478Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-169611872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611872
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611872
    reference: chr 4
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.308C>T
  hgvsp: ENSP00000336735.7:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1454C>T
  hgvsp: ENSP00000425556.1:p.Pro485Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1391C>T
  hgvsp: ENSP00000423063.1:p.Pro464Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1454C>T
  hgvsp: ENSP00000261509.6:p.Pro485Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.308C>T
  hgvsp: ENSP00000426947.1:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1085C>T
  hgvsp: ENSP00000328945.4:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro485Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

4-169611875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611875
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611875
    reference: chr 4
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.311A>G
  hgvsp: ENSP00000336735.7:p.Asp104Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1457A>G
  hgvsp: ENSP00000425556.1:p.Asp486Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1394A>G
  hgvsp: ENSP00000423063.1:p.Asp465Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1457A>G
  hgvsp: ENSP00000261509.6:p.Asp486Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1088A>G
  hgvsp: ENSP00000328945.4:p.Asp363Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.311A>G
  hgvsp: ENSP00000426947.1:p.Asp104Gly
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp486Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

4-169611877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611877
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611877
    reference: chr 4
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.313T>C
  hgvsp: ENSP00000336735.7:p.Phe105Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1459T>C
  hgvsp: ENSP00000425556.1:p.Phe487Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1090T>C
  hgvsp: ENSP00000328945.4:p.Phe364Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1459T>C
  hgvsp: ENSP00000261509.6:p.Phe487Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1396T>C
  hgvsp: ENSP00000423063.1:p.Phe466Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.313T>C
  hgvsp: ENSP00000426947.1:p.Phe105Leu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe487Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

4-169611880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611880
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611880
    reference: chr 4
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1399C>T
  hgvsp: ENSP00000423063.1:p.Arg467Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1462C>T
  hgvsp: ENSP00000261509.6:p.Arg488Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1462C>T
  hgvsp: ENSP00000425556.1:p.Arg488Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.316C>T
  hgvsp: ENSP00000336735.7:p.Arg106Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1093C>T
  hgvsp: ENSP00000328945.4:p.Arg365Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.316C>T
  hgvsp: ENSP00000426947.1:p.Arg106Ter
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg488Ter
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-169611881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611881
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611881
    reference: chr 4
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.317G>A
  hgvsp: ENSP00000336735.7:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1463G>A
  hgvsp: ENSP00000425556.1:p.Arg488Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1094G>A
  hgvsp: ENSP00000328945.4:p.Arg365Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1463G>A
  hgvsp: ENSP00000261509.6:p.Arg488Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1400G>A
  hgvsp: ENSP00000423063.1:p.Arg467Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.317G>A
  hgvsp: ENSP00000426947.1:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg488Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

4-169611881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611881
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611881
    reference: chr 4
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1400G>T
  hgvsp: ENSP00000423063.1:p.Arg467Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1463G>T
  hgvsp: ENSP00000425556.1:p.Arg488Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1463G>T
  hgvsp: ENSP00000261509.6:p.Arg488Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.317G>T
  hgvsp: ENSP00000336735.7:p.Arg106Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1094G>T
  hgvsp: ENSP00000328945.4:p.Arg365Leu
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.317G>T
  hgvsp: ENSP00000426947.1:p.Arg106Leu
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg488Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

4-169611911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611911
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611911
    reference: chr 4
allele count: 286
allele frequency: 2.359229868180093e-3
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+16C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+16C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+16C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+16C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+16C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+16C>T
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 9.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51064
  bin: 9.75e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 7
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-169611921-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611921
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611921
    reference: chr 4
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+26A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+26A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+26A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+26A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+26A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+26A>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8475
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

4-169611924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611924
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611924
    reference: chr 4
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+29C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+29C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+29C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+29C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+29C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+29C>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

4-169611926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611926
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611926
    reference: chr 4
allele count: 10
allele frequency: 8.253549026081215e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+31G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

4-169611930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611930
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611930
    reference: chr 4
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+35A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+35A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+35A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+35A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+35A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+35A>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-169611933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169611933
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169611933
    reference: chr 4
allele count: 397
allele frequency: 3.278336553865465e-3
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1477+38T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1477+38T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.331+38T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.331+38T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1414+38T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1108+38T>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 9.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 7.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51028
  bin: 9.75e1
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 4
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

4-169612373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612373
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612373
    reference: chr 4
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-47C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-47C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-47C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-47C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-47C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-47C>T
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

4-169612384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612384
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612384
    reference: chr 4
allele count: 1
allele frequency: 8.317806760713336e-6
allele num: 120224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-36C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-36C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-36C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-36C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-36C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-36C>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-169612393-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612393
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612393
    reference: chr 4
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-27A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-27A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-27A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-27A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-27A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-27A>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

4-169612396-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612396
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612396
    reference: chr 4
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-24T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-24T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-24T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-24T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-24T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-24T>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14585
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-169612398-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612398
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612399
    reference: chr 4
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-15dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-15dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-15dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-15dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-15dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-15dupT
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

4-169612403-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612403
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612403
    reference: chr 4
allele count: 3
allele frequency: 2.484513201046808e-5
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-17T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-17T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-17T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-17T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-17T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-17T>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23056
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

4-169612409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612409
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612409
    reference: chr 4
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-11G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-11G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-11G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-11G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-11G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-11G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 52
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23055
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-169612412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612412
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612412
    reference: chr 4
allele count: 1
allele frequency: 8.269793751343841e-6
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-8G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-8G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-8G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-8G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-8G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-8G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1478-8G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

4-169612413-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612413
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612413
    reference: chr 4
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-7C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-7C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-7C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-7C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-7C>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-7C>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1478-7C>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-169612415-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612415
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612415
    reference: chr 4
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1478-5A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.332-5A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.332-5A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1415-5A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1109-5A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1478-5A>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1478-5A>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

4-169612434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612434
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612434
    reference: chr 4
allele count: 4
allele frequency: 3.306331625061994e-5
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.346G>A
  hgvsp: ENSP00000336735.7:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.346G>A
  hgvsp: ENSP00000426947.1:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1123G>A
  hgvsp: ENSP00000328945.4:p.Ala375Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1492G>A
  hgvsp: ENSP00000261509.6:p.Ala498Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1429G>A
  hgvsp: ENSP00000423063.1:p.Ala477Thr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1492G>A
  hgvsp: ENSP00000425556.1:p.Ala498Thr
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14548
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23055
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ala498Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

4-169612435-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612435
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612435
    reference: chr 4
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1124C>G
  hgvsp: ENSP00000328945.4:p.Ala375Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1430C>G
  hgvsp: ENSP00000423063.1:p.Ala477Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1493C>G
  hgvsp: ENSP00000425556.1:p.Ala498Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.347C>G
  hgvsp: ENSP00000336735.7:p.Ala116Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.347C>G
  hgvsp: ENSP00000426947.1:p.Ala116Gly
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1493C>G
  hgvsp: ENSP00000261509.6:p.Ala498Gly
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala498Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

4-169612457-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612457
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612456
    reference: chr 4
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+15delA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+15delA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+15delA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+15delA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+15delA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+15delA
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: TA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-169612461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
allele count: 2
allele frequency: 2.449959575667001e-5
allele num: 81634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+18G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+18G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+18G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+18G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+18G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+18G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

4-169612461-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612462
    reference: chr 4
allele count: 14691
allele frequency: 1.799617806306196e-1
allele num: 81634
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+29dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+29dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+29dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+29dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+29dupT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+29dupT
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 2280
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.75e1
  variant carriers: 2319
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.25e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 3.25e1
  variant carriers: 2712
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.75e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 1594
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 655
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 1284
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 536
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 1982
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 944
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 753
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 983
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 1042
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 1129
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 1097
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 2.5e0
  variant carriers: 873
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.75e1
  variant carriers: 919
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 9.75e1
  variant carriers: 3923
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 807
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 554
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.75e1
  variant carriers: 477
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 445
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 627
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 5.75e1
  variant carriers: 692
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

4-169612461-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612463
    reference: chr 4
allele count: 142
allele frequency: 1.739471298723571e-3
allele num: 81634
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+28_1438+29dupTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+28_1132+29dupTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+28_355+29dupTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+28_355+29dupTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+28_1501+29dupTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+28_1501+29dupTT
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 3.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 5.75e1
  variant carriers: 11
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

4-169612461-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612460
    reference: chr 4
allele count: 16543
allele frequency: 2.02648406301296e-1
allele num: 81634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+29delT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+29delT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+29delT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+29delT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+29delT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+29delT
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 1639
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 1154
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 2230
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 1616
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.75e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.25e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.75e1
  variant carriers: 2972
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 564
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 2816
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 3.25e1
  variant carriers: 3156
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 918
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 1124
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 296
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 877
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 1155
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 631
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.25e1
  variant carriers: 448
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.75e1
  variant carriers: 1048
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 2.5e0
  variant carriers: 1014
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 1211
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 1189
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 1219
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 1137
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 519
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 5.75e1
  variant carriers: 905
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 6.75e1
  variant carriers: 687
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GT
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-169612461-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612459
    reference: chr 4
allele count: 137
allele frequency: 1.678222309331896e-3
allele num: 81634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+28_1501+29delTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+28_1501+29delTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+28_355+29delTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+28_355+29delTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+28_1438+29delTT
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+28_1132+29delTT
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 2.5e0
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 31
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: GTT
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-169612462-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612462
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612462
    reference: chr 4
allele count: 1
allele frequency: 1.068147831659902e-4
allele num: 9362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+19T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+19T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+19T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+19T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+19T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+19T>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-169612462-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612462
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612462
    reference: chr 4
allele count: 1
allele frequency: 1.068147831659902e-4
allele num: 9362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+19T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+19T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+19T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+19T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+19T>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+19T>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

4-169612474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612474
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612474
    reference: chr 4
allele count: 2
allele frequency: 1.6839836316791e-5
allele num: 118766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+31G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+31G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14026
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-169612476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612476
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612476
    reference: chr 4
allele count: 33
allele frequency: 2.762245957076372e-4
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+33G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+33G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+33G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+33G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+33G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+33G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13980
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14032
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-169612478-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612479
    reference: chr 4
allele count: 218
allele frequency: 1.827479252242434e-3
allele num: 119290
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+40dupG
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+40dupG
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+40dupG
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+40dupG
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+40dupG
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+40dupG
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13477
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6395
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14181
  bin: 9.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-169612479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612479
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612479
    reference: chr 4
allele count: 2
allele frequency: 1.682255568265931e-5
allele num: 118888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+36G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+36G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+36G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+36G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+36G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+36G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

4-169612479-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612479
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612479
    reference: chr 4
allele count: 2
allele frequency: 1.682255568265931e-5
allele num: 118888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+36G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+36G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+36G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+36G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+36G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+36G>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13276
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/4-169612486-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612486
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612486
    reference: chr 4
allele count: 1
allele frequency: 8.419776370739593e-6
allele num: 118768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+43C>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+43C>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+43C>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+43C>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+43C>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+43C>A
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

4-169612487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612487
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612487
    reference: chr 4
allele count: 2
allele frequency: 1.682850074886828e-5
allele num: 118846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+44A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+44A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+44A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+44A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+44A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+44A>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-169612488-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169612488
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169612488
    reference: chr 4
allele count: 2
allele frequency: 1.683756798168073e-5
allele num: 118782
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+45G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1438+45G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+45G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+45G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+45G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1132+45G>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-169621150-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621150
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621151
    reference: chr 4
allele count: 1
allele frequency: 2.279981760145919e-4
allele num: 4386
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8708dupA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1439-19dupA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8708dupA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8708dupA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1133-19dupA
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8708dupA
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

4-169621181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621181
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621181
    reference: chr 4
allele count: 19
allele frequency: 2.790834312573443e-3
allele num: 6808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1450G>A
  hgvsp: ENSP00000423063.1:p.Val484Ile
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1144G>A
  hgvsp: ENSP00000328945.4:p.Val382Ile
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8738G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8738G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8738G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8738G>A
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val382Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-169621190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621190
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621190
    reference: chr 4
allele count: 4
allele frequency: 4.965243296921549e-4
allele num: 8056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8747C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1459C>T
  hgvsp: ENSP00000423063.1:p.Arg487Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1153C>T
  hgvsp: ENSP00000328945.4:p.Arg385Ter
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8747C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8747C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8747C>T
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg385Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

4-169621191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621191
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621191
    reference: chr 4
allele count: 2098
allele frequency: 2.139942880456956e-1
allele num: 9804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8748G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8748G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1154G>A
  hgvsp: ENSP00000328945.4:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8748G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8748G>A
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1460G>A
  hgvsp: ENSP00000423063.1:p.Arg487Gln
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.5e0
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 2.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 1631
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 27
hgvs: p.Arg385Gln
num of homozygotes: 208
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

4-169621230-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621230
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621230
    reference: chr 4
allele count: 10
allele frequency: 9.752291788570314e-4
allele num: 10254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8787T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1193T>C
  hgvsp: ENSP00000328945.4:p.Leu398Pro
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8787T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1499T>C
  hgvsp: ENSP00000423063.1:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8787T>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8787T>C
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu398Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-169621235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621235
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621235
    reference: chr 4
allele count: 1
allele frequency: 1.004016064257028e-4
allele num: 9960
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8792C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8792C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1198C>T
  hgvsp: ENSP00000328945.4:p.His400Tyr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8792C>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1504C>T
  hgvsp: ENSP00000423063.1:p.His502Tyr
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8792C>T
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His400Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

4-169621261-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169621261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169621261
    reference: chr 4
allele count: 7
allele frequency: 8.951406649616369e-4
allele num: 7820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1501+8818A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1501+8818A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000423063
  ensembl transcript: ENST00000508898
  gene symbol: PALLD
  hgvsc: ENST00000508898.1:c.1530A>G
  hgvsp: ENST00000508898.1:c.1530A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000328945
  ensembl transcript: ENST00000333488
  gene symbol: PALLD
  hgvsc: ENST00000333488.4:c.1224A>G
  hgvsp: ENST00000333488.4:c.1224A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.355+8818A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.355+8818A>G
  variant of: http://identifiers.org/hgnc/17068
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser408Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

4-169630128-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169630128
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169630128
    reference: chr 4
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.356-51G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.356-51G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1502-51G>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1502-51G>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-169630136-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169630136
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169630136
    reference: chr 4
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.356-43A>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1502-43A>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1502-43A>T
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.356-43A>T
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8090
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

4-169630150-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169630150
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169630150
    reference: chr 4
allele count: 6
allele frequency: 4.943561011782154e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.356-29A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1502-29A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1502-29A>G
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.356-29A>G
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/4-169630154-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169630154
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 169630154
    reference: chr 4
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000425556
  ensembl transcript: ENST00000505667
  gene symbol: PALLD
  hgvsc: ENST00000505667.1:c.1502-25A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000426947
  ensembl transcript: ENST00000512127
  gene symbol: PALLD
  hgvsc: ENST00000512127.1:c.356-25A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000261509
  ensembl transcript: ENST00000261509
  gene symbol: PALLD
  hgvsc: ENST00000261509.6:c.1502-25A>C
  variant of: http://identifiers.org/hgnc/17068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129116
  ensembl protein: ENSP00000336735
  ensembl transcript: ENST00000335742
  gene symbol: PALLD
  hgvsc: ENST00000335742.7:c.356-25A>C
  variant of: http://identifiers.org/hgnc/17068
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

4-169630157-A-T
type: Variant
allele count: 6
allele frequency: 4.943398091848337e-5
allele num: 121374
alternate allele: T
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51432
bin: 9.75e1
variant carriers: 1314

GenotypeQuality
all individuals: 1027
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1517
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 784
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1053
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 101
allele frequency: 8.723441008809812e-3
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.709251101321586e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1252
allele frequency: 1.209194514197412e-1
allele num: 10354
num of homozygotes: 85

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 6.453162049404208e-4
allele num: 66634
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.063e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.679e0

DP
type: SiteQuality
SIO_000300: 4.129701e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000780101413184e-5
allele num: 66658
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 4.041791e6

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: 3.1e0

QD
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SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.041943e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 593
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

FS
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 4.041931e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1115
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 4.042073e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.76e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.845e0

MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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East Asian
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African
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allele frequency: 8.655510675129833e-4
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.19871737241152e-4
allele num: 66738
num of homozygotes: 0

Other
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 1130
bin: 6.75e1
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GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.041903e6

FS
type: SiteQuality
SIO_000300: 1.135e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

FS
type: SiteQuality
SIO_000300: 1.104e0

DP
type: SiteQuality
SIO_000300: 4.041612e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 24
allele frequency: 3.628666465074085e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.858067609685927e-3
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 3.258e0

DP
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SIO_000300: 4.043572e6

QD
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SIO_000300: 1.299e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 3.258e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
SIO_000300: 4.043572e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -3.114e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 4.032328e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.66e0

FS
type: SiteQuality
SIO_000300: 7.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.954e0

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.304e0

QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.032263e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.824e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.95e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
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Latino
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European (Non-Finnish)
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allele count: 0
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Other
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European (Finnish)
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DP
type: SiteQuality
SIO_000300: 4.032139e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.76e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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South Asian
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allele num: 16512
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
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Other
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

QD
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 4.031833e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 4.667e0

DP
type: SiteQuality
SIO_000300: 4.031548e6

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.03153e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e0

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.901e0

DP
type: SiteQuality
SIO_000300: 4.030584e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: -8.214e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.061e0

FS
type: SiteQuality
SIO_000300: 6.217e0

QD
type: SiteQuality
SIO_000300: 1.049e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 1090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 7.98e-1

DP
type: SiteQuality
SIO_000300: 4.03035e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

VQSLOD
type: SiteQuality
SIO_000300: -2.596e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.77e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.562e1

DP
type: SiteQuality
SIO_000300: 4.030091e6

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e0

FS
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 58
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.034e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.818e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 4.029949e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 16510
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.029845e6

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.109e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.109e0

DP
type: SiteQuality
SIO_000300: 4.029845e6

FS
type: SiteQuality
SIO_000300: 1.981e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2947
bin: 6.25e1
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 3.326277592984578e-3
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 204
allele frequency: 2.363299351251158e-2
allele num: 8632
num of homozygotes: 7

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.872216844143272e-4
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 7.650076500765007e-4
allele num: 66666
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 1.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.06e-2

DP
type: SiteQuality
SIO_000300: 4.025255e6

QD
type: SiteQuality
SIO_000300: 1.214e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.333e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51012
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.673e1

DP
type: SiteQuality
SIO_000300: 4.012021e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

FS
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.654e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.501e-1

GenotypeQuality
all individuals: 51012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.011098e6

QD
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.716e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

GenotypeQuality
all individuals: 51011
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.500510173458976e-4
allele num: 66644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.010188e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.823e0

QD
type: SiteQuality
SIO_000300: 1.137e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.397e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51006
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.008353e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
SIO_000300: 2.856e0

QD
type: SiteQuality
SIO_000300: 1.437e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.263e0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 390
allele frequency: 2.363636363636364e-2
allele num: 16500
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 4.007343e6

QD
type: SiteQuality
SIO_000300: 1.468e1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 9.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 6.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

DP
type: SiteQuality
SIO_000300: 2.646508e6

GenotypeQuality
all individuals: 2896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 588
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.684e0

QD
type: SiteQuality
SIO_000300: 1.646e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.672578e6

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.808e1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23054
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 2.687322e6

GenotypeQuality
all individuals: 2975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -1.686e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.862e0

DP
type: SiteQuality
SIO_000300: 2.690085e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.76e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

FS
type: SiteQuality
SIO_000300: 2.586e0

QD
type: SiteQuality
SIO_000300: 2.154e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 1.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

DP
type: SiteQuality
SIO_000300: 2.692382e6

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 3.37e0

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.24e-1

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213444970270598e-4
allele num: 16482
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: -5.134e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.567e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.694965e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.185e-1

DP
type: SiteQuality
SIO_000300: 2.697562e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 8.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.523e0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.91e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.505e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.18e-1

DP
type: SiteQuality
SIO_000300: 2.698924e6

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5994
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.311e0

DP
type: SiteQuality
SIO_000300: 2.699213e6

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.038e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 1964
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.699404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.010337780983292e-5
allele num: 66552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 3.446e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 2.699875e6

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23054
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.572e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.429e0

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

DP
type: SiteQuality
SIO_000300: 2.700007e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.551e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 3.6e0

GenotypeQuality
all individuals: 3836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23063
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 11672
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 3.4363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.864e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 2.717923e6

MQ
type: SiteQuality
SIO_000300: 4.148e1

VQSLOD
type: SiteQuality
SIO_000300: -2.012e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

GenotypeQuality
all individuals: 2513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.492766645700422e-5
allele num: 44516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.167e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 2.894317e6

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
all individuals: 3161
bin: 3.25e1
variant carriers: 1008

GenotypeQuality
all individuals: 3509
bin: 1.75e1
variant carriers: 1041

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 416

GenotypeQuality
all individuals: 1744
bin: 6.75e1
variant carriers: 598

GenotypeQuality
all individuals: 2426
bin: 4.75e1
variant carriers: 858

GenotypeQuality
all individuals: 2513
bin: 4.25e1
variant carriers: 879

GenotypeQuality
all individuals: 997
bin: 9.25e1
variant carriers: 391

African
type: Population
allele count: 1153
allele frequency: 1.676359406804304e-1
allele num: 6878
num of homozygotes: 0

South Asian
type: Population
allele count: 3170
allele frequency: 2.655831099195711e-1
allele num: 11936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 574
allele frequency: 1.29981884057971e-1
allele num: 4416
num of homozygotes: 0

East Asian
type: Population
allele count: 971
allele frequency: 1.690459610027855e-1
allele num: 5744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7270
allele frequency: 1.633120675712104e-1
allele num: 44516
num of homozygotes: 0

Latino
type: Population
allele count: 1441
allele frequency: 1.911647651897055e-1
allele num: 7538
num of homozygotes: 0

Other
type: Population
allele count: 112
allele frequency: 1.848184818481848e-1
allele num: 606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.167e-1

QD
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 2.894317e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeQuality
all individuals: 3769
bin: 1.25e1
variant carriers: 23

GenotypeQuality
all individuals: 2426
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2513
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1478
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3161
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.675603217158177e-3
allele num: 11936
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 2.918546033430618e-3
allele num: 7538
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.308519918580983e-3
allele num: 6878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 74
allele frequency: 1.662323658909156e-3
allele num: 44516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.811594202898551e-3
allele num: 4416
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.044568245125348e-3
allele num: 5744
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.950495049504951e-3
allele num: 606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.167e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 2.894317e6

GenotypeQuality
all individuals: 3161
bin: 3.25e1
variant carriers: 1163

GenotypeQuality
all individuals: 8737
bin: 9.75e1
variant carriers: 4205

GenotypeQuality
all individuals: 2280
bin: 6.25e1
variant carriers: 775

GenotypeQuality
all individuals: 2426
bin: 4.75e1
variant carriers: 982

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 582

GenotypeQuality
all individuals: 2513
bin: 4.25e1
variant carriers: 983

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 460

East Asian
type: Population
allele count: 1308
allele frequency: 2.277158774373259e-1
allele num: 5744
num of homozygotes: 0

South Asian
type: Population
allele count: 2100
allele frequency: 1.759383378016086e-1
allele num: 11936
num of homozygotes: 0

African
type: Population
allele count: 1266
allele frequency: 1.840651352137249e-1
allele num: 6878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 719
allele frequency: 1.628170289855072e-1
allele num: 4416
num of homozygotes: 0

Latino
type: Population
allele count: 1669
allele frequency: 2.214115149907137e-1
allele num: 7538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9367
allele frequency: 2.104187258513793e-1
allele num: 44516
num of homozygotes: 0

Other
type: Population
allele count: 114
allele frequency: 1.881188118811881e-1
allele num: 606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

QD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.167e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.894317e6

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2513
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 997
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1971
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2426
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3509
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1188
bin: 8.25e1
variant carriers: 2

African
type: Population
allele count: 6
allele frequency: 8.723466123873219e-4
allele num: 6878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 9.057971014492754e-4
allele num: 4416
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 2.255240116741841e-3
allele num: 7538
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.915041782729805e-3
allele num: 5744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 87
allele frequency: 1.954353490879684e-3
allele num: 44516
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.005361930294906e-3
allele num: 11936
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 2.894317e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.167e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 506
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.886792452830189e-3
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.981e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.279999999999999e-2

DP
type: SiteQuality
SIO_000300: 9.03017e5

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 5.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
all individuals: 13379
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794043774668102e-4
allele num: 5574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: -1.981e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.279999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.15e0

DP
type: SiteQuality
SIO_000300: 9.03017e5

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
all individuals: 2062
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.308425e6

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.563e0

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 4.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
all individuals: 1193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3288
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65852
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.009254749147589e-3
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.292374e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.261e1

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 165
allele frequency: 2.509658382258997e-3
allele num: 65746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.217285453438831e-3
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.163103237629811e-4
allele num: 9822
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 1.706068730197416e-3
allele num: 16412
num of homozygotes: 1

Latino
type: Population
allele count: 7
allele frequency: 6.127450980392157e-4
allele num: 11424
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.68e0

DP
type: SiteQuality
SIO_000300: 2.278668e6

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 1.09e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 13975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221597849987784e-4
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.275597e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 1983
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527883880825057e-5
allele num: 65450
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

DP
type: SiteQuality
SIO_000300: 2.275597e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

GenotypeQuality
all individuals: 2151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14022
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-5
allele num: 65480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.239091e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: 4.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 2247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14023
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044153720359771e-4
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.236362e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

GenotypeQuality
all individuals: 1366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14022
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221597849987784e-4
allele num: 16372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.234185e6

MQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 353
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.564102564102564e-3
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQ
type: SiteQuality
SIO_000300: 6.031e1

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.09e-2

FS
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.329e1

DP
type: SiteQuality
SIO_000300: 1.23091e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 96
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 9.75e1
variant carriers: 15

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 8.347978910369069e-3
allele num: 2276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.46077e5

FS
type: SiteQuality
SIO_000300: 6.198e0

QD
type: SiteQuality
SIO_000300: 1.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.142677561282213e-4
allele num: 3182
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.437768240343348e-3
allele num: 466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.573e5

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 3.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 30

GenotypeQuality
all individuals: 1346
bin: 6.25e1
variant carriers: 36

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 23

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 36

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 36

GenotypeQuality
all individuals: 127
bin: 6.75e1
variant carriers: 26

European (Non-Finnish)
type: Population
allele count: 449
allele frequency: 1.631540697674419e-1
allele num: 2752
num of homozygotes: 36

Other
type: Population
allele count: 27
allele frequency: 1.985294117647059e-1
allele num: 136
num of homozygotes: 3

African
type: Population
allele count: 175
allele frequency: 3.378378378378378e-1
allele num: 518
num of homozygotes: 28

Latino
type: Population
allele count: 22
allele frequency: 1.341463414634146e-1
allele num: 164
num of homozygotes: 1

East Asian
type: Population
allele count: 55
allele frequency: 3.055555555555556e-1
allele num: 180
num of homozygotes: 8

South Asian
type: Population
allele count: 1152
allele frequency: 2.5794894760412e-1
allele num: 4466
num of homozygotes: 115

European (Finnish)
type: Population
allele count: 218
allele frequency: 1.3727959697733e-1
allele num: 1588
num of homozygotes: 17

DP
type: SiteQuality
SIO_000300: 1.76653e5

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.62e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 2.102607232968881e-3
allele num: 4756
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

FS
type: SiteQuality
SIO_000300: 2.726e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.70085e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.937984496124031e-3
allele num: 516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

DP
type: SiteQuality
SIO_000300: 1.66224e5

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.276e0

QD
type: SiteQuality
SIO_000300: 1.106e1

MQRankSum
type: SiteQuality
SIO_000300: -1.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.042e0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.944444444444444e-3
allele num: 144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 2.029769959404601e-3
allele num: 2956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 1.40935e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

FS
type: SiteQuality
SIO_000300: 5.955e0

GenotypeQuality
all individuals: 24188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.603e0

DP
type: SiteQuality
SIO_000300: 2.183883e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 1.981e0

VQSLOD
type: SiteQuality
SIO_000300: -6.248e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.826e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.276e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 2.632e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.428e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

DP
type: SiteQuality
SIO_000300: 2.184433e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 12884
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.994693131052679e-5
allele num: 66706
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.318e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.185577e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

GenotypeQuality
all individuals: 12878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 2.185341e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.401999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e0

QD
type: SiteQuality
SIO_000300: 1.627e1

MQ
type: SiteQuality
SIO_000300: 5.979e1