7-139102490-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102490
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102490
    reference: chr 7
allele count: 33023
allele frequency: 2.789481686714421e-1
allele num: 118384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+15A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+15A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+15A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+15A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+15A>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+15A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+15A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 2303
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 3162
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 3.25e1
  variant carriers: 4790
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 1.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 801
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.75e1
  variant carriers: 4257
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 2.75e1
  variant carriers: 4081
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.25e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 939
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 2125
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 1369
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 523
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 575
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 6.75e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 208
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.75e1
  variant carriers: 327
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 10
num of homozygotes: 6097
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

7-139102493-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102493
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102493
    reference: chr 7
allele count: 1
allele frequency: 8.516581784734879e-6
allele num: 117418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+18A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+18A>G
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

7-139102496-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102496
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102496
    reference: chr 7
allele count: 7
allele frequency: 5.993150684931507e-5
allele num: 116800
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+21G>C
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+21G>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+21G>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+21G>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+21G>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+21G>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+21G>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-139102498-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102498
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102498
    reference: chr 7
allele count: 2893
allele frequency: 2.488859065021766e-2
allele num: 116238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+23A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+23A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+23A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+23A>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+23A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+23A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+23A>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 3.25e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 2.25e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 1.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 21121
  bin: 2.75e1
  variant carriers: 555
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9060
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 9.75e1
  variant carriers: 2818
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 57
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-139102508-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102508
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102508
    reference: chr 7
allele count: 1
allele frequency: 8.733624454148471e-6
allele num: 114500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+33A>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+33A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+33A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+33A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+33A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+33A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+33A>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

7-139102509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102509
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102509
    reference: chr 7
allele count: 43
allele frequency: 3.767765452219477e-4
allele num: 114126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+34C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+34C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+34C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+34C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+34C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+34C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+34C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-139102510-C-CAGACAAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102510
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102518
    reference: chr 7
allele count: 1
allele frequency: 8.781018949438892e-6
allele num: 113882
alternate allele: CAGACAAGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7034
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-139102520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102520
    reference: chr 7
allele count: 13
allele frequency: 1.199660403824148e-4
allele num: 108364
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+45T>C
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+45T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15950
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

7-139102524-GTTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139102524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139102520
    reference: chr 7
allele count: 1
allele frequency: 9.53034461726136e-6
allele num: 104928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*820+52_*820+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.992+52_992+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1001+52_1001+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.998+52_998+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1605+52_1605+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1199+52_1199+55delGTTT
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1798+52_1798+55delGTTT
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15614
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8888
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: GTTGT
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

7-139106864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106864
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106864
    reference: chr 7
allele count: 2
allele frequency: 1.93232981005198e-5
allele num: 103502
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-45T>C
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-45T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-45T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-139106871-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106871
    reference: chr 7
allele count: 1
allele frequency: 9.603011504407782e-6
allele num: 104134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-38T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-38T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-38T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-38T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-38T>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-38T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-38T>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-139106878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106878
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106878
    reference: chr 7
allele count: 4
allele frequency: 3.786086133459536e-5
allele num: 105650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-31A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-31A>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-31A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-31A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-31A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-31A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-31A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

7-139106884-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106884
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106884
    reference: chr 7
allele count: 2
allele frequency: 1.866402881726049e-5
allele num: 107158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-25T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-25T>C
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6045
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

7-139106885-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106885
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106885
    reference: chr 7
allele count: 2
allele frequency: 1.861538747929038e-5
allele num: 107438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-24G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-24G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-24G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-24G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-24G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-24G>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-24G>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-139106888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106888
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106888
    reference: chr 7
allele count: 2
allele frequency: 1.836985873578632e-5
allele num: 108874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.993-21C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1799-21C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.999-21C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1002-21C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1200-21C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1606-21C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*821-21C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-139106912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106912
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106912
    reference: chr 7
allele count: 2
allele frequency: 1.70587332184712e-5
allele num: 117242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1002C>T
  hgvsp: ENST00000263545.6:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1802C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1203C>T
  hgvsp: ENST00000541515.3:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1609C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*824C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1005C>T
  hgvsp: ENST00000354926.4:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.996C>T
  hgvsp: ENST00000541170.3:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser401Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

7-139106925-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106925
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106925
    reference: chr 7
allele count: 177
allele frequency: 1.482387229694645e-3
allele num: 119402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1018T>G
  hgvsp: ENSP00000347005.4:p.Phe340Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1009T>G
  hgvsp: ENSP00000441604.1:p.Phe337Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*837T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1015T>G
  hgvsp: ENSP00000263545.6:p.Phe339Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1216T>G
  hgvsp: ENSP00000440222.1:p.Phe406Val
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1815T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1622T>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36156
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe406Val
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-139106933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106933
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106933
    reference: chr 7
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*845C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1630C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1026C>T
  hgvsp: ENST00000354926.4:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1017C>T
  hgvsp: ENST00000541170.3:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1023C>T
  hgvsp: ENST00000263545.6:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1224C>T
  hgvsp: ENST00000541515.3:c.1224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1823C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp408Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

7-139106938-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106938
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106938
    reference: chr 7
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1028A>T
  hgvsp: ENSP00000263545.6:p.Asp343Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*850A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1229A>T
  hgvsp: ENSP00000440222.1:p.Asp410Val
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1022A>T
  hgvsp: ENSP00000441604.1:p.Asp341Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1031A>T
  hgvsp: ENSP00000347005.4:p.Asp344Val
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1828A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1635A>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp410Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

7-139106940-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106940
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106940
    reference: chr 7
allele count: 8
allele frequency: 6.645511787476533e-5
allele num: 120382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*852T>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1231T>A
  hgvsp: ENSP00000440222.1:p.Leu411Ile
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1033T>A
  hgvsp: ENSP00000347005.4:p.Leu345Ile
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1024T>A
  hgvsp: ENSP00000441604.1:p.Leu342Ile
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1030T>A
  hgvsp: ENSP00000263545.6:p.Leu344Ile
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1637T>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1830T>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu411Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-139106949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106949
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106949
    reference: chr 7
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1039T>C
  hgvsp: ENSP00000263545.6:p.Cys347Arg
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1033T>C
  hgvsp: ENSP00000441604.1:p.Cys345Arg
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1042T>C
  hgvsp: ENSP00000347005.4:p.Cys348Arg
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1240T>C
  hgvsp: ENSP00000440222.1:p.Cys414Arg
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1646T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*861T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1839T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys414Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-139106953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106953
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106953
    reference: chr 7
allele count: 3
allele frequency: 2.486861083939851e-5
allele num: 120634
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1046A>G
  hgvsp: ENSP00000347005.4:p.Asp349Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1244A>G
  hgvsp: ENSP00000440222.1:p.Asp415Gly
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*865A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1043A>G
  hgvsp: ENSP00000263545.6:p.Asp348Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1037A>G
  hgvsp: ENSP00000441604.1:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1843A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1650A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4704
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp415Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

7-139106960-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106960
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106960
    reference: chr 7
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1044C>G
  hgvsp: ENSP00000441604.1:p.Asp348Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1850C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*872C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1251C>G
  hgvsp: ENSP00000440222.1:p.Asp417Glu
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1053C>G
  hgvsp: ENSP00000347005.4:p.Asp351Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1657C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1050C>G
  hgvsp: ENSP00000263545.6:p.Asp350Glu
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp351Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-139106960-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106960
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106957
    reference: chr 7
allele count: 3
allele frequency: 2.486036760196894e-5
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1056_1058delGAG
  hgvsp: ENSP00000347005.4:p.Arg352del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1254_1256delGAG
  hgvsp: ENSP00000440222.1:p.Arg418del
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1660_1662delGAG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*875_*877delGAG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1053_1055delGAG
  hgvsp: ENSP00000263545.6:p.Arg351del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1047_1049delGAG
  hgvsp: ENSP00000441604.1:p.Arg349del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1853_1855delGAG
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg418del
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: CAGG
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

7-139106964-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106964
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106964
    reference: chr 7
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1057A>G
  hgvsp: ENSP00000347005.4:p.Ser353Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1048A>G
  hgvsp: ENSP00000441604.1:p.Ser350Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1255A>G
  hgvsp: ENSP00000440222.1:p.Ser419Gly
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*876A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1054A>G
  hgvsp: ENSP00000263545.6:p.Ser352Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1854A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1661A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser419Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-139106985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106985
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106985
    reference: chr 7
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1069C>T
  hgvsp: ENSP00000441604.1:p.Arg357Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1078C>T
  hgvsp: ENSP00000347005.4:p.Arg360Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*897C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1276C>T
  hgvsp: ENSP00000440222.1:p.Arg426Cys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1682C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1075C>T
  hgvsp: ENSP00000263545.6:p.Arg359Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1875C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg426Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-139106990-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106990
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106990
    reference: chr 7
allele count: 347
allele frequency: 2.874134446542756e-3
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1281C>A
  hgvsp: ENSP00000440222.1:p.Asp427Glu
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*902C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1083C>A
  hgvsp: ENSP00000347005.4:p.Asp361Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1687C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1074C>A
  hgvsp: ENSP00000441604.1:p.Asp358Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1880C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1080C>A
  hgvsp: ENSP00000263545.6:p.Asp360Glu
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 35917
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp427Glu
num of homozygotes: 6
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

7-139106990-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106990
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106988
    reference: chr 7
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1084_1085delGA
  hgvsp: ENSP00000263545.6:p.Asp362SerfsTer4
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1884_1885delGA
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*906_*907delGA
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1087_1088delGA
  hgvsp: ENSP00000347005.4:p.Asp363SerfsTer4
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1285_1286delGA
  hgvsp: ENSP00000440222.1:p.Asp429SerfsTer4
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1078_1079delGA
  hgvsp: ENSP00000441604.1:p.Asp360SerfsTer4
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1691_1692delGA
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp363SerfsTer4
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: CAG
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

7-139106997-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106997
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106997
    reference: chr 7
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1887C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1090C>G
  hgvsp: ENSP00000347005.4:p.Arg364Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*909C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1081C>G
  hgvsp: ENSP00000441604.1:p.Arg361Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1087C>G
  hgvsp: ENSP00000263545.6:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1288C>G
  hgvsp: ENSP00000440222.1:p.Arg430Gly
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1694C>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg430Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

7-139106997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106997
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106997
    reference: chr 7
allele count: 4
allele frequency: 3.312958637711408e-5
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*909C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1090C>T
  hgvsp: ENSP00000347005.4:p.Arg364Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1288C>T
  hgvsp: ENSP00000440222.1:p.Arg430Trp
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1087C>T
  hgvsp: ENSP00000263545.6:p.Arg363Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1694C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1081C>T
  hgvsp: ENSP00000441604.1:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1887C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg430Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-139106998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106998
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106998
    reference: chr 7
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1082G>A
  hgvsp: ENSP00000441604.1:p.Arg361Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1289G>A
  hgvsp: ENSP00000440222.1:p.Arg430Gln
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1888G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1091G>A
  hgvsp: ENSP00000347005.4:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*910G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1088G>A
  hgvsp: ENSP00000263545.6:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1695G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg430Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

7-139106998-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139106998
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139106998
    reference: chr 7
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1088G>T
  hgvsp: ENSP00000263545.6:p.Arg363Leu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1289G>T
  hgvsp: ENSP00000440222.1:p.Arg430Leu
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1091G>T
  hgvsp: ENSP00000347005.4:p.Arg364Leu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1082G>T
  hgvsp: ENSP00000441604.1:p.Arg361Leu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*910G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1695G>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1888G>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg430Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-139107005-TAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107005
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107002
    reference: chr 7
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1300_1302delAAG
  hgvsp: ENSP00000440222.1:p.Lys434del
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1093_1095delAAG
  hgvsp: ENSP00000441604.1:p.Lys365del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1706_1708delAAG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1099_1101delAAG
  hgvsp: ENSP00000263545.6:p.Lys367del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1102_1104delAAG
  hgvsp: ENSP00000347005.4:p.Lys368del
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*921_*923delAAG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1899_1901delAAG
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 35910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys434del
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: TAAG
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/7-139107009-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107009
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107009
    reference: chr 7
allele count: 297
allele frequency: 2.459994036378094e-3
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*921A>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1102A>C
  hgvsp: ENSP00000347005.4:p.Lys368Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1093A>C
  hgvsp: ENSP00000441604.1:p.Lys365Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1899A>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1706A>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1300A>C
  hgvsp: ENSP00000440222.1:p.Lys434Gln
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1099A>C
  hgvsp: ENSP00000263545.6:p.Lys367Gln
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35732
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys434Gln
num of homozygotes: 2
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-139107012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107012
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107012
    reference: chr 7
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*924C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1709C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1096C>T
  hgvsp: ENSP00000441604.1:p.Arg366Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1303C>T
  hgvsp: ENSP00000440222.1:p.Arg435Trp
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1102C>T
  hgvsp: ENSP00000263545.6:p.Arg368Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1105C>T
  hgvsp: ENSP00000347005.4:p.Arg369Trp
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1902C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg435Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

7-139107013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107013
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107013
    reference: chr 7
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1710G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1304G>A
  hgvsp: ENSP00000440222.1:p.Arg435Gln
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1097G>A
  hgvsp: ENSP00000441604.1:p.Arg366Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*925G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1903G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1103G>A
  hgvsp: ENSP00000263545.6:p.Arg368Gln
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1106G>A
  hgvsp: ENSP00000347005.4:p.Arg369Gln
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg435Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-139107018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107018
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107018
    reference: chr 7
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1102T>C
  hgvsp: ENSP00000441604.1:p.Tyr368His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1108T>C
  hgvsp: ENSP00000263545.6:p.Tyr370His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*930T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1309T>C
  hgvsp: ENSP00000440222.1:p.Tyr437His
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1111T>C
  hgvsp: ENSP00000347005.4:p.Tyr371His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1908T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1715T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr437His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

7-139107019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107019
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107019
    reference: chr 7
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1310A>G
  hgvsp: ENSP00000440222.1:p.Tyr437Cys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1716A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1909A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*931A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1109A>G
  hgvsp: ENSP00000263545.6:p.Tyr370Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1103A>G
  hgvsp: ENSP00000441604.1:p.Tyr368Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1112A>G
  hgvsp: ENSP00000347005.4:p.Tyr371Cys
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr437Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-139107024-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107024
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107024
    reference: chr 7
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1914A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1108A>T
  hgvsp: ENSP00000441604.1:p.Ser370Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1114A>T
  hgvsp: ENSP00000263545.6:p.Ser372Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1315A>T
  hgvsp: ENSP00000440222.1:p.Ser439Cys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1117A>T
  hgvsp: ENSP00000347005.4:p.Ser373Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1721A>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*936A>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser439Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

7-139107026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107026
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107026
    reference: chr 7
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1119T>C
  hgvsp: ENST00000354926.4:c.1119T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1317T>C
  hgvsp: ENST00000541515.3:c.1317T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1110T>C
  hgvsp: ENST00000541170.3:c.1110T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1723T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1916T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1116T>C
  hgvsp: ENST00000263545.6:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*938T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7469
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser439Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-139107027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107027
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107027
    reference: chr 7
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1318G>A
  hgvsp: ENSP00000440222.1:p.Ala440Thr
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*939G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1120G>A
  hgvsp: ENSP00000347005.4:p.Ala374Thr
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1111G>A
  hgvsp: ENSP00000441604.1:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1917G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1117G>A
  hgvsp: ENSP00000263545.6:p.Ala373Thr
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1724G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala440Thr
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

7-139107047-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107047
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107047
    reference: chr 7
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1937C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1744C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1140C>G
  hgvsp: ENSP00000347005.4:p.Asp380Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1131C>G
  hgvsp: ENSP00000441604.1:p.Asp377Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1137C>G
  hgvsp: ENSP00000263545.6:p.Asp379Glu
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*959C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1338C>G
  hgvsp: ENSP00000440222.1:p.Asp446Glu
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp446Glu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

7-139107057-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107057
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107057
    reference: chr 7
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1754T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1348T>G
  hgvsp: ENSP00000440222.1:p.Ser450Ala
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1141T>G
  hgvsp: ENSP00000441604.1:p.Ser381Ala
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1147T>G
  hgvsp: ENSP00000263545.6:p.Ser383Ala
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1947T>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1150T>G
  hgvsp: ENSP00000347005.4:p.Ser384Ala
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*969T>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser450Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

7-139107062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107062
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107062
    reference: chr 7
allele count: 1
allele frequency: 8.324731111185109e-6
allele num: 120124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1952A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1353A>G
  hgvsp: ENST00000541515.3:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1759A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1146A>G
  hgvsp: ENST00000541170.3:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*974A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1152A>G
  hgvsp: ENST00000263545.6:c.1152A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1155A>G
  hgvsp: ENST00000354926.4:c.1155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu451Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

7-139107063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107063
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107063
    reference: chr 7
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*975G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1147G>A
  hgvsp: ENSP00000441604.1:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1156G>A
  hgvsp: ENSP00000347005.4:p.Glu386Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1354G>A
  hgvsp: ENSP00000440222.1:p.Glu452Lys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1153G>A
  hgvsp: ENSP00000263545.6:p.Glu385Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1760G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1953G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu452Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-139107066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107066
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107066
    reference: chr 7
allele count: 2
allele frequency: 1.668446342765617e-5
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*978C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1763C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1357C>T
  hgvsp: ENSP00000440222.1:p.Arg453Cys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1956C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1156C>T
  hgvsp: ENSP00000263545.6:p.Arg386Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1150C>T
  hgvsp: ENSP00000441604.1:p.Arg384Cys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1159C>T
  hgvsp: ENSP00000347005.4:p.Arg387Cys
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg453Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

7-139107067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107067
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107067
    reference: chr 7
allele count: 3
allele frequency: 2.504549932377152e-5
allele num: 119782
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1358G>A
  hgvsp: ENSP00000440222.1:p.Arg453His
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1151G>A
  hgvsp: ENSP00000441604.1:p.Arg384His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1160G>A
  hgvsp: ENSP00000347005.4:p.Arg387His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1957G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1157G>A
  hgvsp: ENSP00000263545.6:p.Arg386His
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1764G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*979G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg453His
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

7-139107068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107068
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107068
    reference: chr 7
allele count: 5
allele frequency: 4.174807541372343e-5
allele num: 119766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1158C>T
  hgvsp: ENST00000263545.6:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1359C>T
  hgvsp: ENST00000541515.3:c.1359C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1161C>T
  hgvsp: ENST00000354926.4:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1765C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*980C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1152C>T
  hgvsp: ENST00000541170.3:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1958C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34576
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg453Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

7-139107069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107069
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107069
    reference: chr 7
allele count: 2
allele frequency: 1.671793500066872e-5
allele num: 119632
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1360G>A
  hgvsp: ENSP00000440222.1:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1153G>A
  hgvsp: ENSP00000441604.1:p.Glu385Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*981G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1159G>A
  hgvsp: ENSP00000263545.6:p.Glu387Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1766G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1162G>A
  hgvsp: ENSP00000347005.4:p.Glu388Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1959G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu454Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

7-139107074-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107074
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107075
    reference: chr 7
allele count: 1
allele frequency: 8.370302167908262e-6
allele num: 119470
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1171dupG
  hgvsp: ENSP00000347005.4:p.Glu391GlyfsTer13
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1162dupG
  hgvsp: ENSP00000441604.1:p.Glu388GlyfsTer13
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1369dupG
  hgvsp: ENSP00000440222.1:p.Glu457GlyfsTer13
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1775dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1968dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1168dupG
  hgvsp: ENSP00000263545.6:p.Glu390GlyfsTer13
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*990dupG
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu457GlyfsTer13
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-139107075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107075
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107075
    reference: chr 7
allele count: 1
allele frequency: 8.372825158665037e-6
allele num: 119434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1965G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*987G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1159G>A
  hgvsp: ENSP00000441604.1:p.Gly387Arg
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1168G>A
  hgvsp: ENSP00000347005.4:p.Gly390Arg
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1366G>A
  hgvsp: ENSP00000440222.1:p.Gly456Arg
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1772G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1165G>A
  hgvsp: ENSP00000263545.6:p.Gly389Arg
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly456Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

7-139107078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107078
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107078
    reference: chr 7
allele count: 1
allele frequency: 8.389120987902887e-6
allele num: 119202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1968G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.1168G>A
  hgvsp: ENSP00000263545.6:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.1369G>A
  hgvsp: ENSP00000440222.1:p.Glu457Lys
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.1171G>A
  hgvsp: ENSP00000347005.4:p.Glu391Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*990G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.1162G>A
  hgvsp: ENSP00000441604.1:p.Glu388Lys
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1775G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34062
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34613
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu457Lys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

7-139107089-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107089
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107090
    reference: chr 7
allele count: 1
allele frequency: 8.445232666159953e-6
allele num: 118410
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*4dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1787dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*4dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1980dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*4dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1002dupG
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*4dupG
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-139107093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107093
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107093
    reference: chr 7
allele count: 1
allele frequency: 8.464533604198409e-6
allele num: 118140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*7G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1790G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*7G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1005G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*7G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1983G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*7G>A
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

7-139107094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107094
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107094
    reference: chr 7
allele count: 1
allele frequency: 8.470986869970351e-6
allele num: 118050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*8T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1791T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*8T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*8T>C
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*8T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1006T>C
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1984T>C
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4921
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

7-139107095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107095
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107095
    reference: chr 7
allele count: 3
allele frequency: 2.546473134708429e-5
allele num: 117810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1007G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1985G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1792G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*9G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*9G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/21608
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

7-139107098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107098
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107098
    reference: chr 7
allele count: 2
allele frequency: 1.700882758151481e-5
allele num: 117586
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*12C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1795C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*12C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*12C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1988C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1010C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*12C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-139107106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107106
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107106
    reference: chr 7
allele count: 1
allele frequency: 8.55431993156544e-6
allele num: 116900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.1996C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*20C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*20C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1018C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1803C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*20C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*20C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32141
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

7-139107117-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107117
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107117
    reference: chr 7
allele count: 1
allele frequency: 8.651267410675664e-6
allele num: 115590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1814C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*31C>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1029C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*31C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*31C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*31C>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2007C>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-139107123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107123
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107123
    reference: chr 7
allele count: 1
allele frequency: 8.7415643903633e-6
allele num: 114396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*37A>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1820A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*37A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*37A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1035A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*37A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2013A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-139107124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107124
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107124
    reference: chr 7
allele count: 20
allele frequency: 1.749720044792833e-4
allele num: 114304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*38C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1036C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*38C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*38C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1821C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2014C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*38C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11313
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

7-139107125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107125
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107125
    reference: chr 7
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*39G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1037G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1822G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*39G>A
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*39G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*39G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2015G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-139107132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107132
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107132
    reference: chr 7
allele count: 8
allele frequency: 7.065889418830595e-5
allele num: 113220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*46C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1829C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*46C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1044C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2022C>T
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*46C>T
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*46C>T
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

7-139107133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107133
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107133
    reference: chr 7
allele count: 1
allele frequency: 8.841889334913084e-6
allele num: 113098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*47G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*47G>A
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1830G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1045G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2023G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*47G>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*47G>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/7-139107136-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107136
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107136
    reference: chr 7
allele count: 13
allele frequency: 1.153075162760994e-4
allele num: 112742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1048C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*50C>A
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*50C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1833C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*50C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2026C>A
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*50C>A
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29563
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4948
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 26765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

7-139107138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139107138
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139107138
    reference: chr 7
allele count: 2
allele frequency: 1.775000887500444e-5
allele num: 112676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000441604
  ensembl transcript: ENST00000541170
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000541170.3:c.*52A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000498518
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000498518.1:n.2028A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000393012
  ensembl transcript: ENST00000456182
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000456182.1:c.*1050A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146963
  ensembl transcript: ENST00000482860
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000482860.1:n.1835A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000347005
  ensembl transcript: ENST00000354926
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000354926.4:c.*52A>G
  variant of: http://identifiers.org/hgnc/44671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000269955
  ensembl protein: ENSP00000440222
  ensembl transcript: ENST00000541515
  gene symbol: LUC7L2
  hgvsc: ENST00000541515.3:c.*52A>G
  variant of: http://identifiers.org/hgnc/21608
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000146963
  ensembl protein: ENSP00000263545
  ensembl transcript: ENST00000263545
  gene symbol: C7orf55-LUC7L2
  hgvsc: ENST00000263545.6:c.*52A>G
  variant of: http://identifiers.org/hgnc/44671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12410
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

7-139138239-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138239
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138239
    reference: chr 7
allele count: 1
allele frequency: 8.997660608241857e-5
allele num: 11114
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*94C>G
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.*27C>G
  variant of: http://identifiers.org/hgnc/24778
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 256
  num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-139138243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138243
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138243
    reference: chr 7
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.*23G>A
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*90G>A
  variant of: http://identifiers.org/hgnc/24778
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5059
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 372
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 31720
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 702
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genotype quality: GenotypeQuality
  all individuals: 446
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 262
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

7-139138246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138246
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138246
    reference: chr 7
allele count: 1
allele frequency: 8.41609156707625e-5
allele num: 11882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*87C>T
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.*20C>T
  variant of: http://identifiers.org/hgnc/24778
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 2682
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 118
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5942
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

7-139138247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138247
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138247
    reference: chr 7
allele count: 1
allele frequency: 8.325008325008325e-5
allele num: 12012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*86C>T
  variant of: http://identifiers.org/hgnc/24778
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1361
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 349
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16
  num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-139138266-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138266
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138266
    reference: chr 7
allele count: 1
allele frequency: 6.709608158883521e-5
allele num: 14904
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*67A>G
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.945A>G
  hgvsp: ENSP00000376759.2:p.Ter315TrpextTer23
  variant of: http://identifiers.org/hgnc/24778
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 83
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ter315TrpextTer23
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5272
  num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-139138274-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139138274
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 139138274
    reference: chr 7
allele count: 1
allele frequency: 6.252344629235963e-5
allele num: 15994
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000339356
  ensembl transcript: ENST00000340940
  gene symbol: KLRG2
  hgvsc: ENST00000340940.4:c.*59G>T
  variant of: http://identifiers.org/hgnc/24778
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188883
  ensembl protein: ENSP00000376759
  ensembl transcript: ENST00000393039
  gene symbol: KLRG2
  hgvsc: ENST00000393039.2:c.937G>T
  hgvsp: ENSP00000376759.2:p.Ala313Ser
  variant of: http://identifiers.org/hgnc/24778
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33747
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala313Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7636
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C

GenotypeQuality
all individuals: 777
bin: 3.25e1
variant carriers: 37

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 365

GenotypeQuality
all individuals: 962
bin: 7.25e1
variant carriers: 173

GenotypeQuality
all individuals: 3152
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 420

GenotypeQuality
all individuals: 20287
bin: 6.25e1
variant carriers: 190

GenotypeQuality
all individuals: 25194
bin: 9.75e1
variant carriers: 24609

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 50

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 46

GenotypeQuality
all individuals: 596
bin: 5.75e1
variant carriers: 84

South Asian
type: Population
allele count: 4171
allele frequency: 2.55983797716951e-1
allele num: 16294
num of homozygotes: 563

European (Finnish)
type: Population
allele count: 1103
allele frequency: 1.692236882479288e-1
allele num: 6518
num of homozygotes: 97

African
type: Population
allele count: 7568
allele frequency: 7.755687640910023e-1
allele num: 9758
num of homozygotes: 2932

East Asian
type: Population
allele count: 1868
allele frequency: 2.229116945107399e-1
allele num: 8380
num of homozygotes: 214

European (Non-Finnish)
type: Population
allele count: 16039
allele frequency: 2.454623366288145e-1
allele num: 65342
num of homozygotes: 2064

Other
type: Population
allele count: 226
allele frequency: 2.533632286995516e-1
allele num: 892
num of homozygotes: 28

Latino
type: Population
allele count: 2048
allele frequency: 1.828571428571429e-1
allele num: 11200
num of homozygotes: 199

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.29e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 2.112e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.948788e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.257e-1

GenotypeQuality
all individuals: 5996
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.60859e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -9.667e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.545e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.174e1

GenotypeQuality
all individuals: 6402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2014
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.084565089399151e-4
allele num: 64542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.374e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.433e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.889e1

DP
type: SiteQuality
SIO_000300: 1.562125e6

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1209
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 28580
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 426
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5599
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 157
allele frequency: 1.656817222456733e-2
allele num: 9476
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.439024390243902e-4
allele num: 8200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1632
allele frequency: 2.541106128550075e-2
allele num: 64224
num of homozygotes: 20

South Asian
type: Population
allele count: 835
allele frequency: 5.207683672196582e-2
allele num: 16034
num of homozygotes: 33

European (Finnish)
type: Population
allele count: 145
allele frequency: 2.239036442248301e-2
allele num: 6476
num of homozygotes: 3

Latino
type: Population
allele count: 109
allele frequency: 9.948886454910551e-3
allele num: 10956
num of homozygotes: 1

Other
type: Population
allele count: 13
allele frequency: 1.490825688073395e-2
allele num: 872
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.509696e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

QD
type: SiteQuality
SIO_000300: 1.994e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578880889225717e-5
allele num: 63336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.239e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.324687e6

GenotypeQuality
all individuals: 1031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 33
allele frequency: 3.524134985049124e-3
allele num: 9364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.732039559619332e-4
allele num: 10718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.505101070908054e-5
allele num: 63124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

DP
type: SiteQuality
SIO_000300: 1.308614e6

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
all individuals: 4813
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587351979427918e-5
allele num: 62998
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.292367e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.717e1

MQRankSum
type: SiteQuality
SIO_000300: -2.171e0

FS
type: SiteQuality
SIO_000300: 4.372e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.169e0

VQSLOD
type: SiteQuality
SIO_000300: -9.333e-1

QD
type: SiteQuality
SIO_000300: 2.8e-1

GenotypeQuality
all individuals: 1053
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8928
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.832966739985336e-4
allele num: 60012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.005429318318922e-4
allele num: 9946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.600512163892446e-4
allele num: 6248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

QD
type: SiteQuality
SIO_000300: 1.694e1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.158315e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4418
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718449271377509e-5
allele num: 58192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.253e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.688e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.144062e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 5006
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1675
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variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.408548639989093e-5
allele num: 58676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.471e1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.256679e6

GenotypeQuality
all individuals: 1491
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.329080276448698e-4
allele num: 7524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.408e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.305725e6

QD
type: SiteQuality
SIO_000300: 1.947e1

MQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.68e-1

GenotypeQuality
all individuals: 1969
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variant carriers: 0

GenotypeQuality
all individuals: 6818
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.120071684587814e-4
allele num: 8928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.540357362908195e-4
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.833852924995415e-4
allele num: 10906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 2.138e0

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.370831e6

GenotypeQuality
all individuals: 6290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
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variant carriers: 0

GenotypeQuality
all individuals: 4583
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.793400286944046e-4
allele num: 11152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 1.41071e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644574548564286e-5
allele num: 60806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.419085e6

FS
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.435e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
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GenotypeQuality
all individuals: 217
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4603
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6271
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GenotypeQuality
all individuals: 1315
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61554
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780626780626781e-4
allele num: 11232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

DP
type: SiteQuality
SIO_000300: 1.444536e6

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

FS
type: SiteQuality
SIO_000300: 4.148e0

VQSLOD
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2704
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1226
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GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740038280842179e-4
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.553291e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 5.779e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

FS
type: SiteQuality
SIO_000300: 1.789e0

GenotypeQuality
all individuals: 2381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 102
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 176

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3553
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 175
allele frequency: 1.112948359196133e-2
allele num: 15724
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

DP
type: SiteQuality
SIO_000300: 1.580911e6

QD
type: SiteQuality
SIO_000300: 1.455e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
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GenotypeQuality
all individuals: 4693
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1254
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7337
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.586851e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.613e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.41e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e0

DP
type: SiteQuality
SIO_000300: 1.590481e6

VQSLOD
type: SiteQuality
SIO_000300: -7.504e-1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
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variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201742526663662e-4
allele num: 66570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.591826e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.555e0

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.176e0

QD
type: SiteQuality
SIO_000300: 1.301e1

FS
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 2428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

FS
type: SiteQuality
SIO_000300: 1.757e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

DP
type: SiteQuality
SIO_000300: 1.59537e6

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.061849357011635e-4
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.595885e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7473
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.596813e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.859e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.618e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 4704
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variant carriers: 1

GenotypeQuality
all individuals: 1260
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819063788503517e-4
allele num: 16492
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.596813e6

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-2

MQ
type: SiteQuality
SIO_000300: 5.618e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.859e1

GenotypeQuality
all individuals: 2426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.597071e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.099e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 2.164e0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

GenotypeQuality
all individuals: 7503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.286e0

FS
type: SiteQuality
SIO_000300: 1.743e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 1.598365e6

QD
type: SiteQuality
SIO_000300: 2.492e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 3603
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
bin: 2.25e1
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GenotypeQuality
all individuals: 5024
bin: 9.75e1
variant carriers: 341

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 1.332848661092936e-3
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.147670723664488e-4
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 299
allele frequency: 3.466264780894969e-2
allele num: 8626
num of homozygotes: 6

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

FS
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.620315e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.631e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5024
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.631e0

DP
type: SiteQuality
SIO_000300: 1.620315e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 1.604796e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

FS
type: SiteQuality
SIO_000300: 1.802e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

FS
type: SiteQuality
SIO_000300: 1.802e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

DP
type: SiteQuality
SIO_000300: 1.604796e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.604887e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.604887e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4837
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 2.079e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.466e1

DP
type: SiteQuality
SIO_000300: 1.6047e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -1.841e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 295

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 102
allele frequency: 6.181068961338019e-3
allele num: 16502
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.454342984409799e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.048038707447727e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 181
allele frequency: 2.712992385634631e-3
allele num: 66716
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.625732e6

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 3.305e0

DP
type: SiteQuality
SIO_000300: 1.609001e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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MQRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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SIO_000300: 1.609003e6

ClippingRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele num: 16492
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9800
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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MQRankSum
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MQ
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Other
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Latino
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European (Finnish)
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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QD
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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Latino
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66474
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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Other
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.148e0

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeQuality
all individuals: 986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4922
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e0

DP
type: SiteQuality
SIO_000300: 1.595055e6

FS
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4924
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.896573523833607e-4
allele num: 15818
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.594957e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4920
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505525277769414e-5
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.322e0

DP
type: SiteQuality
SIO_000300: 1.592109e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 7250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
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GenotypeQuality
all individuals: 34950
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02124183006536e-4
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9444e1

MQ
type: SiteQuality
SIO_000300: 6.02e1

QD
type: SiteQuality
SIO_000300: 1.068e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.345e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 1.586987e6

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.414368184733804e-5
allele num: 15590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.585758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

QD
type: SiteQuality
SIO_000300: 1.631e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 7238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.485925541574782e-5
allele num: 15418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 1.581997e6

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.04e1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.566486e6

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.185e0

FS
type: SiteQuality
SIO_000300: 1.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.407e0

DP
type: SiteQuality
SIO_000300: 1.562741e6

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 2.528e1

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1291
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.854949273375377e-5
allele num: 14588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.560576e6

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.644e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4924
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.545867806164197e-5
allele num: 65994
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

DP
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.798e0

FS
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SIO_000300: 1.527e0

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.400560224089636e-4
allele num: 14280
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9744
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65728
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Other
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allele frequency: 0.0e0
allele num: 860
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 7.233796296296296e-5
allele num: 13824
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.530175052025952e-5
allele num: 65352
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
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BaseQRankSum
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SIO_000300: -3.41e0

QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65052
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.99e-1

DP
type: SiteQuality
SIO_000300: 1.525451e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.817e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.117e0

QD
type: SiteQuality
SIO_000300: 1.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12068
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.092783505154639e-4
allele num: 9700
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.334267040149393e-4
allele num: 8568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 2.306840551181102e-4
allele num: 65024
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.096e0

DP
type: SiteQuality
SIO_000300: 1.526062e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539361472861057e-5
allele num: 64962
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.235139725181411e-4
allele num: 64770
num of homozygotes: 0

South Asian
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East Asian
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Other
type: Population
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African
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8548
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.544258447093706e-5
allele num: 64756
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Latino
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South Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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QD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 9.109127345600292e-4
allele num: 10978
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Latino
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allele frequency: 1.743375174337517e-4
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64652
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
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allele frequency: 1.21654501216545e-3
allele num: 822
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BaseQRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 1.528534e6

QD
type: SiteQuality
SIO_000300: 1.553e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.815541031227306e-4
allele num: 5508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.877e1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.160000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.23526e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.5e-4
allele num: 4000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.244e1

DP
type: SiteQuality
SIO_000300: 2.34652e5

VQSLOD
type: SiteQuality
SIO_000300: -3.864e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.427184466019417e-4
allele num: 4120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

QD
type: SiteQuality
SIO_000300: 7.28e0

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.47373e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.99e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.363295880149813e-4
allele num: 1068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.50855e5

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.920000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.369e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.360544217687075e-4
allele num: 7350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.166e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 3.26307e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.603e0

QD
type: SiteQuality
SIO_000300: 1.165e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.724137931034483e-4
allele num: 5800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0