6-32610534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610534
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610534
    reference: chr 6
allele count: 1
allele frequency: 8.695500947809604e-6
allele num: 115002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-195C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.761C>T
  hgvsp: ENSP00000378767.1:p.Pro254Leu
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.761C>T
  hgvsp: ENSP00000339398.5:p.Pro254Leu
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1145C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.761C>T
  hgvsp: ENSP00000364087.2:p.Pro254Leu
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1593C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro254Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-32610535-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610535
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610535
    reference: chr 6
allele count: 67942
allele frequency: 6.281039105112323e-1
allele num: 108170
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.762A>C
  hgvsp: ENST00000343139.5:c.762A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.762A>C
  hgvsp: ENST00000374949.2:c.762A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1594A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-194A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.762A>C
  hgvsp: ENST00000395363.1:c.762A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1146A>C
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.75e1
  variant carriers: 2283
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 8.25e1
  variant carriers: 1284
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.75e1
  variant carriers: 1567
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 1923
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 1389
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 6.75e1
  variant carriers: 1291
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 1277
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.5e0
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 5.25e1
  variant carriers: 1582
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 1037
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 1455
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 4.75e1
  variant carriers: 1696
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 9.25e1
  variant carriers: 1340
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 2.75e1
  variant carriers: 2283
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.25e1
  variant carriers: 1315
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 9.75e1
  variant carriers: 17283
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.75e1
  variant carriers: 1362
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 2264
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 2064
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
  variant carriers: 560
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.75e1
  variant carriers: 562
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 1.25e1
  variant carriers: 397
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.5e0
  variant carriers: 404
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 414
genotype quality: GenotypeQuality
  all individuals: 6248
  bin: 6.25e1
  variant carriers: 785
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.75e1
  variant carriers: 666
genotype quality: GenotypeQuality
  all individuals: 35073
  bin: 9.75e1
  variant carriers: 34009
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.25e1
  variant carriers: 465
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 783
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 308
hgvs: p.Pro254Pro
num of homozygotes: 24490
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

6-32610535-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610535
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610535
    reference: chr 6
allele count: 1
allele frequency: 9.244707405010632e-6
allele num: 108170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1146A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.762A>G
  hgvsp: ENST00000343139.5:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1594A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.762A>G
  hgvsp: ENST00000395363.1:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.762A>G
  hgvsp: ENST00000374949.2:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-194A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35073
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro254Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

6-32610538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610538
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610538
    reference: chr 6
allele count: 1
allele frequency: 8.757180888328429e-6
allele num: 114192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.765G>A
  hgvsp: ENST00000374949.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.765G>A
  hgvsp: ENST00000343139.5:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1149G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-191G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.765G>A
  hgvsp: ENST00000395363.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1597G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu255Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-32610545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610545
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610545
    reference: chr 6
allele count: 1
allele frequency: 8.83033396323049e-6
allele num: 113246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1156C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1604C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-184C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*4C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*4C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-32610546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610546
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610546
    reference: chr 6
allele count: 3
allele frequency: 2.653786953983334e-5
allele num: 113046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1157C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*5C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*5C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1605C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-183C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-32610551-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610551
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610550
    reference: chr 6
allele count: 1
allele frequency: 8.993938085730218e-6
allele num: 111186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1164delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-176delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*12delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*12delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*12delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1612delG
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24843
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: TG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-32610553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610553
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610553
    reference: chr 6
allele count: 18558
allele frequency: 1.705479074383811e-1
allele num: 108814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*12G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1164G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1612G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-176G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.5e0
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 1753
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 1151
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 2038
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 1054
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 677
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 1841
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.75e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 7.75e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 6.25e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 5.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 9.75e1
  variant carriers: 2398
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 1452
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 8.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 2.75e1
  variant carriers: 1859
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.25e1
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 6.75e1
  variant carriers: 358
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 291
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 9.25e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 506
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 28695
  bin: 9.75e1
  variant carriers: 11780
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 4.75e1
  variant carriers: 444
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 379
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.25e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 8.75e1
  variant carriers: 259
num of homozygotes: 2232
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

6-32610555-AGGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610552
    reference: chr 6
allele count: 4
allele frequency: 3.628710356339357e-5
allele num: 110232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1615_*1617delGGG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*15_*17delGGG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-173_614-171delGGG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*15_*17delGGG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1167_1169delGGG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*15_*17delGGG
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24570
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 1.25e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: AGGG
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

6-32610556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610556
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610556
    reference: chr 6
allele count: 18002
allele frequency: 1.703218725755483e-1
allele num: 105694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*15G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-173G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1615G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1167G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 800
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 2.75e1
  variant carriers: 1759
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 1385
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.75e1
  variant carriers: 2140
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 2.25e1
  variant carriers: 2160
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.25e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 6.25e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.5e0
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.25e1
  variant carriers: 1978
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 1263
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 6.75e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 9.75e1
  variant carriers: 2229
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 427
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 6.75e1
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.25e1
  variant carriers: 409
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.25e1
  variant carriers: 486
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.75e1
  variant carriers: 486
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 1.75e1
  variant carriers: 381
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 269
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 9.25e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 5.75e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 452
genotype quality: GenotypeQuality
  all individuals: 8241
  bin: 6.25e1
  variant carriers: 376
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 177
num of homozygotes: 2066
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

6-32610556-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610556
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610556
    reference: chr 6
allele count: 25168
allele frequency: 2.381213692357182e-1
allele num: 105694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1167G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1615G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-173G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 1049
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 6.75e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 1368
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 2.25e1
  variant carriers: 2199
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 693
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 6.25e1
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 2.75e1
  variant carriers: 2089
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 602
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 557
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 9.75e1
  variant carriers: 4797
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.75e1
  variant carriers: 1680
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.25e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.25e1
  variant carriers: 854
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 637
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 1693
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.25e1
  variant carriers: 575
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.75e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 1.75e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.25e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.75e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 316
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 6.75e1
  variant carriers: 328
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.75e1
  variant carriers: 299
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 216
num of homozygotes: 3967
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

6-32610557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610557
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610557
    reference: chr 6
allele count: 9738
allele frequency: 8.93476465730801e-2
allele num: 108990
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*16G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1616G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-172G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*16G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1168G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 2.75e1
  variant carriers: 867
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 6.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 3.75e1
  variant carriers: 402
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 9.75e1
  variant carriers: 1543
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.5e0
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 3.25e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 4.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 1.25e1
  variant carriers: 935
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 1.75e1
  variant carriers: 1178
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.75e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 7.5e0
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 5.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 4.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 8.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.25e1
  variant carriers: 1098
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.25e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 12973
  bin: 6.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 2.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 9.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.25e1
  variant carriers: 90
num of homozygotes: 664
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-32610564-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610564
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610564
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 99020
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+3A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+3A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*23A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+3A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-165A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1175A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: c.*20+3A>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

6-32610567-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610567
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610567
    reference: chr 6
allele count: 9043
allele frequency: 9.414103978846114e-2
allele num: 96058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*26A>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+6A>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-162A>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+6A>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+6A>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1178A>T
  variant of: http://identifiers.org/hgnc/4942
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 6.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 1.25e1
  variant carriers: 1619
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 2.25e1
  variant carriers: 898
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 4.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 5.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 8.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.5e0
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 5.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 6.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 7.5e0
  variant carriers: 883
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.75e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 9.75e1
  variant carriers: 1157
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 1.75e1
  variant carriers: 1570
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 4.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 9944
  bin: 6.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 9.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 2.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 22647
  bin: 9.75e1
  variant carriers: 8136
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 106
hgvs: c.*20+6A>T
num of homozygotes: 572
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-32610570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610570
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 91970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+9G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+9G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*29G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-159G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+9G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-32610573-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610573
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610573
    reference: chr 6
allele count: 2
allele frequency: 2.251745102454402e-5
allele num: 88820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+12A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1184A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-156A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+12A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*32A>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+12A>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

6-32610574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610574
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610574
    reference: chr 6
allele count: 23767
allele frequency: 2.699507053451762e-1
allele num: 88042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1185C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-155C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+13C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+13C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+13C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 1.25e1
  variant carriers: 5791
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.25e1
  variant carriers: 914
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 479
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 2.75e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 4.25e1
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 726
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.75e1
  variant carriers: 676
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 5.25e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 6.25e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 7.75e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 7.5e0
  variant carriers: 7538
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 2452
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 2.5e0
  variant carriers: 2425
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 9.75e1
  variant carriers: 2007
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.25e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 8.25e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 777
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 6.75e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 17610
  bin: 9.75e1
  variant carriers: 13329
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 961
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 1289
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 671
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 362
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 9.25e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 803
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 1228
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 7.5e0
  variant carriers: 614
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 1509
num of homozygotes: 5758
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

6-32610576-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610576
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610576
    reference: chr 6
allele count: 21023
allele frequency: 2.44396651941409e-1
allele num: 86020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-153G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+15G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*35G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1187G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.25e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 9.25e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 9.75e1
  variant carriers: 1802
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.25e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 7.5e0
  variant carriers: 8131
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 5.75e1
  variant carriers: 720
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.75e1
  variant carriers: 1946
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.75e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 6.25e1
  variant carriers: 776
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 437
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 8.25e1
  variant carriers: 509
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 608
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 5.25e1
  variant carriers: 635
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.5e0
  variant carriers: 3240
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 2.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 1.25e1
  variant carriers: 5190
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.75e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 8.75e1
  variant carriers: 444
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 1641
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 812
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 964
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 8.75e1
  variant carriers: 360
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.25e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 6.75e1
  variant carriers: 491
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 1.75e1
  variant carriers: 1463
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 428
genotype quality: GenotypeQuality
  all individuals: 17370
  bin: 9.75e1
  variant carriers: 13144
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 1225
num of homozygotes: 4743
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

6-32610577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610577
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610577
    reference: chr 6
allele count: 14
allele frequency: 1.614838054812217e-4
allele num: 86696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-152G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*36G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+16G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+16G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1188G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+16G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6623
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-32610581-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610581
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610581
    reference: chr 6
allele count: 18765
allele frequency: 2.271736761821748e-1
allele num: 82602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+20C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+20C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1192C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-148C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*40C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+20C>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 434
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.75e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.75e1
  variant carriers: 550
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 716
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 2.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 5.25e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 7.5e0
  variant carriers: 8724
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.75e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 1.25e1
  variant carriers: 4729
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 2.5e0
  variant carriers: 3824
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 6.25e1
  variant carriers: 809
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 838
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.75e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 9.75e1
  variant carriers: 1324
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 814
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 5.75e1
  variant carriers: 628
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 1283
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 955
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 1620
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 791
genotype quality: GenotypeQuality
  all individuals: 10749
  bin: 6.25e1
  variant carriers: 558
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 1206
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.25e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 6.75e1
  variant carriers: 492
num of homozygotes: 3936
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

6-32610584-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610584
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610584
    reference: chr 6
allele count: 17843
allele frequency: 2.193793493495955e-1
allele num: 81334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+23T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*43T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+23T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+23T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-145T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1195T>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 901
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 1.25e1
  variant carriers: 4498
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 806
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.75e1
  variant carriers: 1213
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 2.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.5e0
  variant carriers: 4131
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.75e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 4.75e1
  variant carriers: 715
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 9.75e1
  variant carriers: 1118
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 633
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.25e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 7.5e0
  variant carriers: 8869
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 8.75e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 6.75e1
  variant carriers: 696
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 6.25e1
  variant carriers: 792
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 8.25e1
  variant carriers: 415
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 789
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.5e0
  variant carriers: 656
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 1203
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 3.75e1
  variant carriers: 1278
genotype quality: GenotypeQuality
  all individuals: 16947
  bin: 9.75e1
  variant carriers: 12952
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 631
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 9.25e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.75e1
  variant carriers: 353
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 785
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 2.5e0
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 2.25e1
  variant carriers: 1616
num of homozygotes: 3634
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

6-32610586-G-GAAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610586
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610590
    reference: chr 6
allele count: 1
allele frequency: 1.287166945552838e-5
allele num: 77690
alternate allele: GAAGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1198_1201dupAAGC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*46_*49dupAAGC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+26_*1620+29dupAAGC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+26_*20+29dupAAGC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-142_614-139dupAAGC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+26_*20+29dupAAGC
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-32610589-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610589
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610589
    reference: chr 6
allele count: 7008
allele frequency: 8.895884637843053e-2
allele num: 78778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-140G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+28G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1200G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*48G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+28G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+28G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 5.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 5.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.5e0
  variant carriers: 2455
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 1.25e1
  variant carriers: 2432
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 7.5e0
  variant carriers: 5357
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 2.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 3.75e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 9.75e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 6.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.75e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.25e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.25e1
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.25e1
  variant carriers: 455
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 869
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 2.25e1
  variant carriers: 882
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.75e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 7.5e0
  variant carriers: 448
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 2.5e0
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 515
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 346
genotype quality: GenotypeQuality
  all individuals: 11038
  bin: 6.25e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.75e1
  variant carriers: 201
num of homozygotes: 580
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-32610590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610590
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610590
    reference: chr 6
allele count: 1
allele frequency: 1.297016861219196e-5
allele num: 77100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+29C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+29C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-139C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*49C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1201C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+29C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

6-32610591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
allele count: 8
allele frequency: 1.00185342884336e-4
allele num: 79852
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+30G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-138G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+30G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+30G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*50G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1202G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17692
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 3
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-32610591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
allele count: 6260
allele frequency: 7.839503080699294e-2
allele num: 79852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*50G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1202G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-138G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+30G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+30G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+30G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 383
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.25e1
  variant carriers: 1981
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 7.5e0
  variant carriers: 5051
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.5e0
  variant carriers: 2637
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.75e1
  variant carriers: 395
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 8.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 6.25e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.75e1
  variant carriers: 368
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 400
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 492
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 733
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.25e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 491
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 7.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 852
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 592
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 9.25e1
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 313
num of homozygotes: 521
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-32610591-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610591
    reference: chr 6
allele count: 9609
allele frequency: 1.203351199719481e-1
allele num: 79852
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+30G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1202G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*50G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+30G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-138G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+30G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 462
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.75e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 7.5e0
  variant carriers: 5289
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 8.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 783
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.5e0
  variant carriers: 2219
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.75e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.25e1
  variant carriers: 2915
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 6.25e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.25e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 554
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 565
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 8.75e1
  variant carriers: 227
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 7.75e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 438
genotype quality: GenotypeQuality
  all individuals: 10933
  bin: 6.25e1
  variant carriers: 295
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 455
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 285
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 447
num of homozygotes: 1392
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-32610592-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610592
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610592
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 76502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1203G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+31G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+31G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+31G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*51G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-137G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10982
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

6-32610593-CAGTATGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610593
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610585
    reference: chr 6
allele count: 9601
allele frequency: 1.169427527405603e-1
allele num: 82100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*55_*62delTATGAAAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.75e1
  variant carriers: 458
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.75e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 4.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 2955
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 794
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 5.75e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 7.5e0
  variant carriers: 5357
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 2.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.5e0
  variant carriers: 2242
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 6.25e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 432
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 5.25e1
  variant carriers: 487
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 3.25e1
  variant carriers: 559
genotype quality: GenotypeQuality
  all individuals: 12378
  bin: 6.25e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.75e1
  variant carriers: 491
genotype quality: GenotypeQuality
  all individuals: 4535
  bin: 6.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 16291
  bin: 9.75e1
  variant carriers: 9855
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.5e0
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 5653
  bin: 7.5e0
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 434
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 290
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.75e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 580
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 313
num of homozygotes: 1392
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CAGTATGAA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-32610595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610595
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610595
    reference: chr 6
allele count: 2
allele frequency: 3.139421718519449e-5
allele num: 63706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*54G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-134G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+34G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+34G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1206G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+34G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-32610595-GTAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610595
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610592
    reference: chr 6
allele count: 11
allele frequency: 1.726681945185697e-4
allele num: 63706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+35_*20+37delTAT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1207_1209delTAT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*55_*57delTAT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-133_614-131delTAT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+35_*1620+37delTAT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+35_*20+37delTAT
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12060
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: GTAT
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-32610595-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610595
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610595
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 63706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1206G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+34G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*54G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+34G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+34G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-134G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6167
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-32610596-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610596
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610596
    reference: chr 6
allele count: 8
allele frequency: 1.28563622922894e-4
allele num: 62226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-133T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+35T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*55T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1207T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+35T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+35T>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

6-32610596-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610596
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610596
    reference: chr 6
allele count: 20
allele frequency: 3.214090573072349e-4
allele num: 62226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+35T>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+35T>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+35T>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*55T>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1207T>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-133T>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5443
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-32610598-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610598
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610598
    reference: chr 6
allele count: 12
allele frequency: 1.947482878379694e-4
allele num: 61618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*57T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+37T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1209T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+37T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+37T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-131T>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

6-32610601-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610601
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610601
    reference: chr 6
allele count: 3506
allele frequency: 5.827598816528706e-2
allele num: 60162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+40A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+40A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*60A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+40A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1212A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-128A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 2.5e0
  variant carriers: 4035
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 7.5e0
  variant carriers: 4879
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 2.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 3.75e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.25e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 5.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 1209
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 3.25e1
  variant carriers: 669
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 4.75e1
  variant carriers: 342
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 463
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.25e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 5.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 513
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 1.25e1
  variant carriers: 334
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 4.25e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 710
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 2.25e1
  variant carriers: 775
num of homozygotes: 237
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-32610606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610606
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610606
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 77736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*65A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+45A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-123A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+45A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+45A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1217A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

6-32610608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610608
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610608
    reference: chr 6
allele count: 1
allele frequency: 1.292991983449703e-5
allele num: 77340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-121G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+47G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1219G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+47G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+47G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*67G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6133
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS

6-32610611-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610611
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610611
    reference: chr 6
allele count: 1
allele frequency: 1.302693971132302e-5
allele num: 76764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*70A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1222A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+50A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+50A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-118A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+50A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5335
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-32610612-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610612
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610611
    reference: chr 6
allele count: 6
allele frequency: 7.854431208273334e-5
allele num: 76390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1224delT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*72delT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-116delT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+52delT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+52delT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+52delT
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6139
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: GT
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

6-32610613-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610613
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610612
    reference: chr 6
allele count: 1251
allele frequency: 1.650874924120457e-2
allele num: 75778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+55delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+55delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-113delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*75delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+55delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1227delG
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.25e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 2.5e0
  variant carriers: 2206
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 7.5e0
  variant carriers: 2011
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 2.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 3.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 3.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 2.25e1
  variant carriers: 294
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 5667
  bin: 7.5e0
  variant carriers: 500
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 7.75e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 12786
  bin: 6.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 1.75e1
  variant carriers: 661
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 2.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 9.25e1
  variant carriers: 45
num of homozygotes: 43
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: TG
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

6-32610614-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610614
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610614
    reference: chr 6
allele count: 6
allele frequency: 8.258092931072451e-5
allele num: 72656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1225G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+53G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+53G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*73G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+53G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-115G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

6-32610614-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610614
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610616
    reference: chr 6
allele count: 163
allele frequency: 2.243448579608016e-3
allele num: 72656
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+54_*1620+55insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-114_614-113insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*74_*75insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1226_1227insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+54_*20+55insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+54_*20+55insAG
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.5e0
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 9.75e1
  variant carriers: 172
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 6
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-32610615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610615
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610615
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 73844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1226G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+54G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-114G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+54G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*74G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+54G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

6-32610616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610616
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610616
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 73582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1227G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+55G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+55G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-113G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+55G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*75G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5702
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-32610618-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 75452
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-111_614-110insAA
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*77_*78insAA
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+57_*20+58insAA
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1229_1230insAA
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+57_*1620+58insAA
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+57_*20+58insAA
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10077
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-32610618-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
allele count: 9352
allele frequency: 1.239463499973493e-1
allele num: 75452
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*78_*79insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1230_1231insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+58_*1620+59insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-110_614-109insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+58_*20+59insAG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+58_*20+59insAG
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 1031
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 2.75e1
  variant carriers: 944
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 1165
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 1455
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 7.5e0
  variant carriers: 6652
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 2.5e0
  variant carriers: 5301
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.75e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 831
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 576
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 1.75e1
  variant carriers: 2607
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 5.25e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 7.5e0
  variant carriers: 1478
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 2037
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 2.25e1
  variant carriers: 1772
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 953
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.25e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.75e1
  variant carriers: 425
num of homozygotes: 1215
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

6-32610620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
allele count: 6
allele frequency: 1.131179065646092e-4
allele num: 53042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1231G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+59G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*79G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+59G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-109G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+59G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9012
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

6-32610620-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610620
    reference: chr 6
allele count: 62
allele frequency: 1.168885034500961e-3
allele num: 53042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1231G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+59G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+59G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*79G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+59G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-109G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9012
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 4.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

6-32610621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
allele count: 62
allele frequency: 9.539048556834267e-4
allele num: 64996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+60C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+60C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-108C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*80C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1232C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+60C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.5e0
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9318
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-32610621-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610619
    reference: chr 6
allele count: 9677
allele frequency: 1.488860852975568e-1
allele num: 64996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*81_*82delGT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+61_*20+62delGT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-107_614-106delGT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+61_*1620+62delGT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1233_1234delGT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+61_*20+62delGT
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.25e1
  variant carriers: 1593
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 864
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.75e1
  variant carriers: 992
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 635
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.5e0
  variant carriers: 5172
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 1114
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 997
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 7.5e0
  variant carriers: 6612
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 385
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.25e1
  variant carriers: 335
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 426
genotype quality: GenotypeQuality
  all individuals: 9422
  bin: 6.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 642
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 895
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 2.5e0
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 5.25e1
  variant carriers: 303
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 2041
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 6.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 9318
  bin: 9.75e1
  variant carriers: 6286
num of homozygotes: 1375
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CGT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

6-32610621-C-CTTTTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610627
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 64996
alternate allele: CTTTTCT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+60_*20+61insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-108_614-107insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+60_*1620+61insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1232_1233insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*80_*81insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+60_*20+61insTTTTCT
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

6-32610621-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610621
    reference: chr 6
allele count: 4
allele frequency: 6.154224875376947e-5
allele num: 64996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-108C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+60C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+60C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+60C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*80C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1232C>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-32610623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610623
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610623
    reference: chr 6
allele count: 1
allele frequency: 2.111843216759588e-5
allele num: 47352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-106T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+62T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1234T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+62T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+62T>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*82T>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-32610632-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610632
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610632
    reference: chr 6
allele count: 144
allele frequency: 2.160086403456138e-3
allele num: 66664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*91T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1243T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+71T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+71T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-97T>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+71T>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 2.5e0
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 7.5e0
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 11874
  bin: 6.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 10387
  bin: 2.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 7775
  bin: 7.5e0
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

6-32610635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610635
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610635
    reference: chr 6
allele count: 29
allele frequency: 4.446761530912659e-4
allele num: 65216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1246A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+74A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+74A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+74A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*94A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-94A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 8
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-32610635-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610635
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610633
    reference: chr 6
allele count: 270
allele frequency: 4.1400883218842e-3
allele num: 65216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+77_*20+78delTG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-91_614-90delTG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+77_*1620+78delTG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*97_*98delTG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1249_1250delTG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+77_*20+78delTG
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 1.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 7.5e0
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.5e0
  variant carriers: 880
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 9.75e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 12072
  bin: 6.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 6.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 10700
  bin: 2.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 7.5e0
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.5e0
  variant carriers: 76
num of homozygotes: 5
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: ATG
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-32610639-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610639
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610639
    reference: chr 6
allele count: 2
allele frequency: 3.10539718029936e-5
allele num: 64404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-90G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*98G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+78G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+78G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1250G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+78G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

6-32610643-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610643
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610643
    reference: chr 6
allele count: 12392
allele frequency: 2.001744580493006e-1
allele num: 61906
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*20+82G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1254G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+82G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-86G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*102G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1620+82G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.25e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 1417
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 1.25e1
  variant carriers: 1084
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 678
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 2.75e1
  variant carriers: 1098
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 1324
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 7.5e0
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 2.75e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 11086
  bin: 7.5e0
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 1.75e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.75e1
  variant carriers: 347
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.75e1
  variant carriers: 390
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.25e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 13282
  bin: 2.25e1
  variant carriers: 263
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.5e0
  variant carriers: 183
num of homozygotes: 3654
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

6-32610647-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610647
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610647
    reference: chr 6
allele count: 1
allele frequency: 1.688219603606037e-5
allele num: 59234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+86G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1258G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*106G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-82G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-82G>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-82G>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-32610652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610652
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610652
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 57184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-77A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-77A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-77A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+91A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1263A>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*111A>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-32610663-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610663
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 51558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+102G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-66G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1274G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-66G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*122G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-66G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18590
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-32610670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610670
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610670
    reference: chr 6
allele count: 1
allele frequency: 2.050188617352796e-5
allele num: 48776
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-59C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1281C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-59C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*129C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-59C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+109C>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16697
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-32610679-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610679
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610679
    reference: chr 6
allele count: 2
allele frequency: 4.625560849252972e-5
allele num: 43238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-50G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*138G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1290G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+118G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-50G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-50G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

6-32610683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610683
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610683
    reference: chr 6
allele count: 659
allele frequency: 1.818834179730625e-2
allele num: 36232
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-46C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+122C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*142C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-46C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1294C>T
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-46C>T
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14186
  bin: 7.5e0
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 1.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 2.5e0
  variant carriers: 1331
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 1.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 1.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 14008
  bin: 7.5e0
  variant carriers: 719
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 7023
  bin: 2.5e0
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 10539
  bin: 2.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 75
num of homozygotes: 6
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-32610687-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610687
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610686
    reference: chr 6
allele count: 1
allele frequency: 2.819124943617501e-5
allele num: 35472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-41delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*147delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-41delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+127delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1299delG
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-41delG
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9505
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: AG
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

6-32610688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610688
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610688
    reference: chr 6
allele count: 1
allele frequency: 2.938410907381288e-5
allele num: 34032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*147G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-41G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-41G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+127G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-41G>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1299G>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13846
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-32610688-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610688
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610688
    reference: chr 6
allele count: 7269
allele frequency: 2.135930888575458e-1
allele num: 34032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-41G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+127G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*147G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-41G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1299G>C
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-41G>C
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.25e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 470
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 7.5e0
  variant carriers: 2660
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 1117
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.5e0
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 1.25e1
  variant carriers: 1934
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 2.25e1
  variant carriers: 695
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 1.25e1
  variant carriers: 407
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 9.75e1
  variant carriers: 4784
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 4854
  bin: 1.75e1
  variant carriers: 841
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 13846
  bin: 7.5e0
  variant carriers: 343
num of homozygotes: 1817
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-32610688-GCCCCCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610688
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610682
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 34032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1301_1306delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-39_614-34delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*149_*154delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-39_*21-34delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-39_*1621-34delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+129_*20+134delCCCCTC
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4854
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: GCCCCCT
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-32610689-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610689
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610689
    reference: chr 6
allele count: 11378
allele frequency: 3.409853752097818e-1
allele num: 33368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*148C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-40C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1300C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-40C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-40C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+128C>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.75e1
  variant carriers: 1997
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 2.5e0
  variant carriers: 1401
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 7.5e0
  variant carriers: 4533
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.25e1
  variant carriers: 858
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 1.25e1
  variant carriers: 3564
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.75e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 12909
  bin: 7.5e0
  variant carriers: 772
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 610
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 3.25e1
  variant carriers: 784
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 289
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 2.25e1
  variant carriers: 1280
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 2.5e0
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 1.75e1
  variant carriers: 1458
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 4.75e1
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 6.25e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 1.25e1
  variant carriers: 769
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 142
num of homozygotes: 3036
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-32610690-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610690
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610690
    reference: chr 6
allele count: 555
allele frequency: 1.953262476244105e-2
allele num: 28414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*149C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1301C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+129C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-39C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-39C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-39C>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 1.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 2.5e0
  variant carriers: 1306
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 7.5e0
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 1.25e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 6.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 1.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 9.75e1
  variant carriers: 571
genotype quality: GenotypeQuality
  all individuals: 12683
  bin: 7.5e0
  variant carriers: 673
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 2.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 1.25e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 7141
  bin: 2.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 2.5e0
  variant carriers: 82
num of homozygotes: 6
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

6-32610691-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610691
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610691
    reference: chr 6
allele count: 532
allele frequency: 1.870867913911943e-2
allele num: 28436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1302C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-38C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*150C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+130C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-38C>G
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-38C>G
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.5e0
  variant carriers: 1335
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 7.5e0
  variant carriers: 563
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 1.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 1.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 12793
  bin: 7.5e0
  variant carriers: 674
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 1.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 1.25e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 9.75e1
  variant carriers: 571
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 6.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 2.25e1
  variant carriers: 68
num of homozygotes: 5
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-32610692-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32610692
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32610692
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 30650
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000339398
  ensembl transcript: ENST00000343139
  gene symbol: HLA-DQA1
  hgvsc: ENST00000343139.5:c.*21-37C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000378767
  ensembl transcript: ENST00000395363
  gene symbol: HLA-DQA1
  hgvsc: ENST00000395363.1:c.*20+131C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000364087
  ensembl transcript: ENST00000374949
  gene symbol: HLA-DQA1
  hgvsc: ENST00000374949.2:c.*151C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196735
  ensembl transcript: ENST00000460633
  gene symbol: HLA-DQA1
  hgvsc: ENST00000460633.1:n.1303C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000437302
  ensembl transcript: ENST00000496318
  gene symbol: HLA-DQA1
  hgvsc: ENST00000496318.1:c.614-37C>A
  variant of: http://identifiers.org/hgnc/4942
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196735
  ensembl protein: ENSP00000436546
  ensembl transcript: ENST00000482745
  gene symbol: HLA-DQA1
  hgvsc: ENST00000482745.1:c.*1621-37C>A
  variant of: http://identifiers.org/hgnc/4942
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 652
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-4
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 4.513611e6

FS
type: SiteQuality
SIO_000300: 3.51e0

MQ
type: SiteQuality
SIO_000300: 3.701e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

MQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.124e0

GenotypeQuality
all individuals: 663
bin: 4.25e1
variant carriers: 506

GenotypeQuality
all individuals: 2097
bin: 6.75e1
variant carriers: 752

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 615

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 810

GenotypeQuality
all individuals: 1104
bin: 8.25e1
variant carriers: 853

GenotypeQuality
all individuals: 775
bin: 8.75e1
variant carriers: 606

GenotypeQuality
all individuals: 1041
bin: 7.25e1
variant carriers: 586

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 830

East Asian
type: Population
allele count: 4976
allele frequency: 6.43392810964572e-1
allele num: 7734
num of homozygotes: 1895

European (Non-Finnish)
type: Population
allele count: 35164
allele frequency: 6.012995896032832e-1
allele num: 58480
num of homozygotes: 12219

Latino
type: Population
allele count: 8257
allele frequency: 7.772025602409639e-1
allele num: 10624
num of homozygotes: 3505

South Asian
type: Population
allele count: 11228
allele frequency: 7.102732793522267e-1
allele num: 15808
num of homozygotes: 4275

Other
type: Population
allele count: 485
allele frequency: 5.914634146341463e-1
allele num: 820
num of homozygotes: 165

African
type: Population
allele count: 4529
allele frequency: 5.208141674333027e-1
allele num: 8696
num of homozygotes: 1367

European (Finnish)
type: Population
allele count: 3303
allele frequency: 5.497669773635153e-1
allele num: 6008
num of homozygotes: 1064

FS
type: SiteQuality
SIO_000300: 6.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 4.661846e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.03e1

VQSLOD
type: SiteQuality
SIO_000300: 2.309e1

QD
type: SiteQuality
SIO_000300: 1.852e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.703e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-1

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.325910931174089e-5
allele num: 15808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

FS
type: SiteQuality
SIO_000300: 6.023e0

QD
type: SiteQuality
SIO_000300: 1.852e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.703e0

VQSLOD
type: SiteQuality
SIO_000300: 2.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.03e1

DP
type: SiteQuality
SIO_000300: 4.661846e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

GenotypeQuality
all individuals: 15626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-4
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.285e0

MQRankSum
type: SiteQuality
SIO_000300: -3.819e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

DP
type: SiteQuality
SIO_000300: 3.372115e6

QD
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 3.396e0

MQ
type: SiteQuality
SIO_000300: 5.207e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 1357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.548946716232962e-4
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.52e-1

DP
type: SiteQuality
SIO_000300: 3.354952e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.206e1

FS
type: SiteQuality
SIO_000300: 5.334e0

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

QD
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.276e0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12876
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.861448711716091e-5
allele num: 61710
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.545e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

QD
type: SiteQuality
SIO_000300: 2.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

DP
type: SiteQuality
SIO_000300: 3.351028e6

MQ
type: SiteQuality
SIO_000300: 5.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.632e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
all individuals: 1614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.57035175879397e-4
allele num: 6368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.273e-1

FS
type: SiteQuality
SIO_000300: 5.063e0

QD
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 5.188e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 3.328247e6

GenotypeQuality
all individuals: 1428
bin: 2.25e1
variant carriers: 461

GenotypeQuality
all individuals: 769
bin: 2.5e0
variant carriers: 165

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 275

GenotypeQuality
all individuals: 1201
bin: 3.25e1
variant carriers: 525

GenotypeQuality
all individuals: 813
bin: 4.25e1
variant carriers: 372

GenotypeQuality
all individuals: 558
bin: 5.75e1
variant carriers: 345

GenotypeQuality
all individuals: 8883
bin: 6.25e1
variant carriers: 399

GenotypeQuality
all individuals: 1661
bin: 7.75e1
variant carriers: 318

European (Finnish)
type: Population
allele count: 852
allele frequency: 1.382219338092148e-1
allele num: 6164
num of homozygotes: 67

East Asian
type: Population
allele count: 1273
allele frequency: 1.634146341463415e-1
allele num: 7790
num of homozygotes: 192

Latino
type: Population
allele count: 1942
allele frequency: 1.918593163406442e-1
allele num: 10122
num of homozygotes: 183

European (Non-Finnish)
type: Population
allele count: 10356
allele frequency: 1.741850842668281e-1
allele num: 59454
num of homozygotes: 1277

Other
type: Population
allele count: 144
allele frequency: 1.734939759036145e-1
allele num: 830
num of homozygotes: 15

African
type: Population
allele count: 1133
allele frequency: 1.296932234432235e-1
allele num: 8736
num of homozygotes: 108

South Asian
type: Population
allele count: 2858
allele frequency: 1.818297493319761e-1
allele num: 15718
num of homozygotes: 390

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.403e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

MQ
type: SiteQuality
SIO_000300: 3.81e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

MQRankSum
type: SiteQuality
SIO_000300: -2.859e0

FS
type: SiteQuality
SIO_000300: 2.1615e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

DP
type: SiteQuality
SIO_000300: 3.32063e6

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1083
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1066
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3403
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.979583706802111e-5
allele num: 60246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.130965844831486e-4
allele num: 8842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQ
type: SiteQuality
SIO_000300: 3.863e1

DP
type: SiteQuality
SIO_000300: 3.271285e6

FS
type: SiteQuality
SIO_000300: 1.9136e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.585e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.658e0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 266

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 366

GenotypeQuality
all individuals: 1133
bin: 2.25e1
variant carriers: 424

GenotypeQuality
all individuals: 1299
bin: 8.25e1
variant carriers: 267

GenotypeQuality
all individuals: 952
bin: 8.75e1
variant carriers: 249

GenotypeQuality
all individuals: 749
bin: 2.75e1
variant carriers: 324

GenotypeQuality
all individuals: 1500
bin: 7.25e1
variant carriers: 242

GenotypeQuality
all individuals: 29755
bin: 9.75e1
variant carriers: 12066

Latino
type: Population
allele count: 1872
allele frequency: 1.894353369763206e-1
allele num: 9882
num of homozygotes: 168

African
type: Population
allele count: 1111
allele frequency: 1.300936768149883e-1
allele num: 8540
num of homozygotes: 100

East Asian
type: Population
allele count: 1211
allele frequency: 1.614236203679019e-1
allele num: 7502
num of homozygotes: 174

South Asian
type: Population
allele count: 2811
allele frequency: 1.821775761503565e-1
allele num: 15430
num of homozygotes: 372

European (Finnish)
type: Population
allele count: 815
allele frequency: 1.36151019044437e-1
allele num: 5986
num of homozygotes: 60

Other
type: Population
allele count: 142
allele frequency: 1.744471744471744e-1
allele num: 814
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 10040
allele frequency: 1.744873131734446e-1
allele num: 57540
num of homozygotes: 1177

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.196e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.49e0

QD
type: SiteQuality
SIO_000300: 1.042e1

DP
type: SiteQuality
SIO_000300: 3.240936e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.669e-1

FS
type: SiteQuality
SIO_000300: 4.159e0

MQ
type: SiteQuality
SIO_000300: 4.271e1

VQSLOD
type: SiteQuality
SIO_000300: 7.126000000000001e1

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 237

GenotypeQuality
all individuals: 8241
bin: 6.25e1
variant carriers: 316

GenotypeQuality
all individuals: 1500
bin: 7.25e1
variant carriers: 249

GenotypeQuality
all individuals: 29755
bin: 9.75e1
variant carriers: 17079

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 217

GenotypeQuality
all individuals: 718
bin: 5.75e1
variant carriers: 248

GenotypeQuality
all individuals: 1133
bin: 2.25e1
variant carriers: 234

GenotypeQuality
all individuals: 1038
bin: 9.25e1
variant carriers: 331

Other
type: Population
allele count: 170
allele frequency: 2.088452088452089e-1
allele num: 814
num of homozygotes: 29

East Asian
type: Population
allele count: 1372
allele frequency: 1.828845641162357e-1
allele num: 7502
num of homozygotes: 194

African
type: Population
allele count: 1689
allele frequency: 1.977751756440281e-1
allele num: 8540
num of homozygotes: 210

European (Non-Finnish)
type: Population
allele count: 14312
allele frequency: 2.48731317344456e-1
allele num: 57540
num of homozygotes: 2251

Latino
type: Population
allele count: 2896
allele frequency: 2.930580854078122e-1
allele num: 9882
num of homozygotes: 529

South Asian
type: Population
allele count: 3852
allele frequency: 2.496435515230071e-1
allele num: 15430
num of homozygotes: 675

European (Finnish)
type: Population
allele count: 877
allele frequency: 1.465085198797194e-1
allele num: 5986
num of homozygotes: 79

BaseQRankSum
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.196e0

MQRankSum
type: SiteQuality
SIO_000300: -3.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.669e-1

QD
type: SiteQuality
SIO_000300: 1.042e1

FS
type: SiteQuality
SIO_000300: 4.159e0

DP
type: SiteQuality
SIO_000300: 3.240936e6

VQSLOD
type: SiteQuality
SIO_000300: 7.126000000000001e1

MQ
type: SiteQuality
SIO_000300: 4.271e1

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 93

GenotypeQuality
all individuals: 1635
bin: 7.5e0
variant carriers: 53

GenotypeQuality
all individuals: 22712
bin: 9.75e1
variant carriers: 8208

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 87

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 89

GenotypeQuality
all individuals: 4346
bin: 6.75e1
variant carriers: 81

GenotypeQuality
all individuals: 980
bin: 2.75e1
variant carriers: 73

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 103

Latino
type: Population
allele count: 624
allele frequency: 6.181890231820884e-2
allele num: 10094
num of homozygotes: 27

Other
type: Population
allele count: 69
allele frequency: 8.29326923076923e-2
allele num: 832
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 308
allele frequency: 4.915416533673795e-2
allele num: 6266
num of homozygotes: 4

East Asian
type: Population
allele count: 289
allele frequency: 3.701331967213115e-2
allele num: 7808
num of homozygotes: 9

South Asian
type: Population
allele count: 2170
allele frequency: 1.379529561347743e-1
allele num: 15730
num of homozygotes: 213

African
type: Population
allele count: 703
allele frequency: 8.014135886912904e-2
allele num: 8772
num of homozygotes: 37

European (Non-Finnish)
type: Population
allele count: 5575
allele frequency: 9.371637977407209e-2
allele num: 59488
num of homozygotes: 372

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.09e-2

FS
type: SiteQuality
SIO_000300: 2.8692e1

DP
type: SiteQuality
SIO_000300: 2.611916e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.012e0

MQ
type: SiteQuality
SIO_000300: 3.762e1

MQRankSum
type: SiteQuality
SIO_000300: -2.893e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

GenotypeQuality
all individuals: 4477
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18648
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14394
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.414e1

DP
type: SiteQuality
SIO_000300: 2.413246e6

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 86

GenotypeQuality
all individuals: 4078
bin: 7.5e0
variant carriers: 51

GenotypeQuality
all individuals: 885
bin: 2.75e1
variant carriers: 70

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 91

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 100

GenotypeQuality
all individuals: 1206
bin: 8.25e1
variant carriers: 87

GenotypeQuality
all individuals: 503
bin: 3.75e1
variant carriers: 89

GenotypeQuality
all individuals: 1739
bin: 1.75e1
variant carriers: 65

African
type: Population
allele count: 660
allele frequency: 8.217131474103585e-2
allele num: 8032
num of homozygotes: 31

Latino
type: Population
allele count: 554
allele frequency: 7.474365893146249e-2
allele num: 7412
num of homozygotes: 21

European (Finnish)
type: Population
allele count: 290
allele frequency: 5.102040816326531e-2
allele num: 5684
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 5142
allele frequency: 9.665050186083229e-2
allele num: 53202
num of homozygotes: 313

Other
type: Population
allele count: 64
allele frequency: 8.533333333333333e-2
allele num: 750
num of homozygotes: 1

South Asian
type: Population
allele count: 2060
allele frequency: 1.464524385041945e-1
allele num: 14066
num of homozygotes: 194

East Asian
type: Population
allele count: 273
allele frequency: 3.949652777777778e-2
allele num: 6912
num of homozygotes: 8

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.368e0

DP
type: SiteQuality
SIO_000300: 2.384396e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.78e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.305e0

FS
type: SiteQuality
SIO_000300: 2.377e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQ
type: SiteQuality
SIO_000300: 3.612e1

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

VQSLOD
type: SiteQuality
SIO_000300: -3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 3.62e1

FS
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.31931e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.536806516059628e-4
allele num: 13014
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.327e1

DP
type: SiteQuality
SIO_000300: 2.314283e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

GenotypeQuality
all individuals: 2033
bin: 2.25e1
variant carriers: 1656

GenotypeQuality
all individuals: 1869
bin: 3.25e1
variant carriers: 1522

GenotypeQuality
all individuals: 1180
bin: 1.25e1
variant carriers: 859

GenotypeQuality
all individuals: 10439
bin: 6.25e1
variant carriers: 584

GenotypeQuality
all individuals: 1408
bin: 4.75e1
variant carriers: 967

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 394

GenotypeQuality
all individuals: 1784
bin: 7.75e1
variant carriers: 421

GenotypeQuality
all individuals: 2004
bin: 7.25e1
variant carriers: 425

European (Non-Finnish)
type: Population
allele count: 12512
allele frequency: 2.578730420445177e-1
allele num: 48520
num of homozygotes: 2827

Latino
type: Population
allele count: 2996
allele frequency: 4.399412628487518e-1
allele num: 6810
num of homozygotes: 964

Other
type: Population
allele count: 165
allele frequency: 2.377521613832853e-1
allele num: 694
num of homozygotes: 34

African
type: Population
allele count: 1891
allele frequency: 2.554024851431659e-1
allele num: 7404
num of homozygotes: 444

East Asian
type: Population
allele count: 1812
allele frequency: 2.84012539184953e-1
allele num: 6380
num of homozygotes: 481

European (Finnish)
type: Population
allele count: 1025
allele frequency: 2.005086071987481e-1
allele num: 5112
num of homozygotes: 165

South Asian
type: Population
allele count: 3366
allele frequency: 2.565157750342936e-1
allele num: 13122
num of homozygotes: 843

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

FS
type: SiteQuality
SIO_000300: 8.647e0

DP
type: SiteQuality
SIO_000300: 2.290643e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.798e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.308e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.475e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQ
type: SiteQuality
SIO_000300: 3.601e1

VQSLOD
type: SiteQuality
SIO_000300: 4.723e1

QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeQuality
all individuals: 1375
bin: 4.75e1
variant carriers: 953

GenotypeQuality
all individuals: 1701
bin: 3.75e1
variant carriers: 1298

GenotypeQuality
all individuals: 1136
bin: 5.75e1
variant carriers: 654

GenotypeQuality
all individuals: 1244
bin: 5.25e1
variant carriers: 808

GenotypeQuality
all individuals: 10756
bin: 6.25e1
variant carriers: 563

GenotypeQuality
all individuals: 1852
bin: 3.25e1
variant carriers: 1512

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 339

GenotypeQuality
all individuals: 1850
bin: 7.75e1
variant carriers: 423

Other
type: Population
allele count: 157
allele frequency: 2.26878612716763e-1
allele num: 692
num of homozygotes: 32

South Asian
type: Population
allele count: 3013
allele frequency: 2.332043343653251e-1
allele num: 12920
num of homozygotes: 705

East Asian
type: Population
allele count: 1628
allele frequency: 2.600638977635783e-1
allele num: 6260
num of homozygotes: 412

African
type: Population
allele count: 1695
allele frequency: 2.316839803171132e-1
allele num: 7316
num of homozygotes: 365

European (Finnish)
type: Population
allele count: 942
allele frequency: 1.827706635622817e-1
allele num: 5154
num of homozygotes: 139

Latino
type: Population
allele count: 2447
allele frequency: 3.886594663278272e-1
allele num: 6296
num of homozygotes: 742

European (Non-Finnish)
type: Population
allele count: 11141
allele frequency: 2.351314845299903e-1
allele num: 47382
num of homozygotes: 2348

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 3.426e1

DP
type: SiteQuality
SIO_000300: 2.207716e6

MQRankSum
type: SiteQuality
SIO_000300: -3.312e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

FS
type: SiteQuality
SIO_000300: 1.548e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.939e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.971e1

QD
type: SiteQuality
SIO_000300: 1.57e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

GenotypeQuality
all individuals: 2432
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16544
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 4984
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.081081081081081e-3
allele num: 12950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.9e1

DP
type: SiteQuality
SIO_000300: 2.116307e6

QD
type: SiteQuality
SIO_000300: 1.584e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

FS
type: SiteQuality
SIO_000300: 3.5105e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.171e1

GenotypeQuality
all individuals: 1950
bin: 3.25e1
variant carriers: 1507

GenotypeQuality
all individuals: 1820
bin: 1.75e1
variant carriers: 1443

GenotypeQuality
all individuals: 1365
bin: 7.5e0
variant carriers: 640

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 387

GenotypeQuality
all individuals: 1433
bin: 4.75e1
variant carriers: 932

GenotypeQuality
all individuals: 1731
bin: 7.75e1
variant carriers: 404

GenotypeQuality
all individuals: 977
bin: 8.75e1
variant carriers: 357

GenotypeQuality
all individuals: 17078
bin: 9.75e1
variant carriers: 13052

Other
type: Population
allele count: 149
allele frequency: 2.178362573099415e-1
allele num: 684
num of homozygotes: 29

European (Finnish)
type: Population
allele count: 826
allele frequency: 1.664651350261991e-1
allele num: 4962
num of homozygotes: 106

East Asian
type: Population
allele count: 1381
allele frequency: 2.3446519524618e-1
allele num: 5890
num of homozygotes: 323

African
type: Population
allele count: 1490
allele frequency: 2.100958826847152e-1
allele num: 7092
num of homozygotes: 293

Latino
type: Population
allele count: 1738
allele frequency: 3.19838056680162e-1
allele num: 5434
num of homozygotes: 462

South Asian
type: Population
allele count: 2850
allele frequency: 2.250829252882641e-1
allele num: 12662
num of homozygotes: 639

European (Non-Finnish)
type: Population
allele count: 10331
allele frequency: 2.251841841405467e-1
allele num: 45878
num of homozygotes: 2084

VQSLOD
type: SiteQuality
SIO_000300: 5.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQ
type: SiteQuality
SIO_000300: 3.222e1

FS
type: SiteQuality
SIO_000300: 1.0705e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.938e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.302e0

QD
type: SiteQuality
SIO_000300: 1.695e1

DP
type: SiteQuality
SIO_000300: 2.097e6

GenotypeQuality
all individuals: 1836
bin: 1.75e1
variant carriers: 1432

GenotypeQuality
all individuals: 1442
bin: 4.25e1
variant carriers: 952

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 414

GenotypeQuality
all individuals: 1964
bin: 3.25e1
variant carriers: 1493

GenotypeQuality
all individuals: 3927
bin: 6.75e1
variant carriers: 489

GenotypeQuality
all individuals: 10754
bin: 6.25e1
variant carriers: 556

GenotypeQuality
all individuals: 1322
bin: 8.25e1
variant carriers: 376

GenotypeQuality
all individuals: 1437
bin: 4.75e1
variant carriers: 938

South Asian
type: Population
allele count: 2689
allele frequency: 2.149824112567957e-1
allele num: 12508
num of homozygotes: 569

East Asian
type: Population
allele count: 1341
allele frequency: 2.301750772399588e-1
allele num: 5826
num of homozygotes: 311

European (Finnish)
type: Population
allele count: 806
allele frequency: 1.638211382113821e-1
allele num: 4920
num of homozygotes: 100

Other
type: Population
allele count: 140
allele frequency: 2.095808383233533e-1
allele num: 668
num of homozygotes: 25

African
type: Population
allele count: 1413
allele frequency: 2.020881006864989e-1
allele num: 6992
num of homozygotes: 266

Latino
type: Population
allele count: 1596
allele frequency: 3.052792654934965e-1
allele num: 5228
num of homozygotes: 410

European (Non-Finnish)
type: Population
allele count: 9858
allele frequency: 2.181359532660648e-1
allele num: 45192
num of homozygotes: 1953

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.954e-1

FS
type: SiteQuality
SIO_000300: 1.0871e1

MQRankSum
type: SiteQuality
SIO_000300: -3.278e0

QD
type: SiteQuality
SIO_000300: 1.773e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

DP
type: SiteQuality
SIO_000300: 2.032454e6

VQSLOD
type: SiteQuality
SIO_000300: 5.103e1

MQ
type: SiteQuality
SIO_000300: 3.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11854
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.810938065918146e-4
allele num: 5522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.394e0

FS
type: SiteQuality
SIO_000300: 9.364000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.248e1

QD
type: SiteQuality
SIO_000300: 2.411e1

DP
type: SiteQuality
SIO_000300: 1.930078e6

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.663e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
all individuals: 4038
bin: 6.75e1
variant carriers: 222

GenotypeQuality
all individuals: 841
bin: 3.75e1
variant carriers: 556

GenotypeQuality
all individuals: 1491
bin: 8.25e1
variant carriers: 153

GenotypeQuality
all individuals: 1235
bin: 9.25e1
variant carriers: 192

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 717

GenotypeQuality
all individuals: 1814
bin: 7.75e1
variant carriers: 174

GenotypeQuality
all individuals: 16860
bin: 9.75e1
variant carriers: 7494

GenotypeQuality
all individuals: 1833
bin: 7.25e1
variant carriers: 172

African
type: Population
allele count: 683
allele frequency: 9.912917271407838e-2
allele num: 6890
num of homozygotes: 70

East Asian
type: Population
allele count: 663
allele frequency: 1.173451327433628e-1
allele num: 5650
num of homozygotes: 61

South Asian
type: Population
allele count: 617
allele frequency: 5.16750418760469e-2
allele num: 11940
num of homozygotes: 31

European (Finnish)
type: Population
allele count: 364
allele frequency: 7.306302689682859e-2
allele num: 4982
num of homozygotes: 15

Other
type: Population
allele count: 48
allele frequency: 7.453416149068323e-2
allele num: 644
num of homozygotes: 3

Latino
type: Population
allele count: 823
allele frequency: 1.649298597194389e-1
allele num: 4990
num of homozygotes: 119

European (Non-Finnish)
type: Population
allele count: 3810
allele frequency: 8.722128107687377e-2
allele num: 43682
num of homozygotes: 281

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.285e-1

FS
type: SiteQuality
SIO_000300: 1.069e1

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

DP
type: SiteQuality
SIO_000300: 1.920989e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

VQSLOD
type: SiteQuality
SIO_000300: 3.432e1

GenotypeQuality
all individuals: 1298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42758
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.457374830852504e-5
allele num: 11824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.364e1

VQSLOD
type: SiteQuality
SIO_000300: -9.922e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 1.906999e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 1122
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10933
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.024291497975708e-4
allele num: 4940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.514876518127229e-5
allele num: 44298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.229612492770387e-4
allele num: 6916
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.990000000000001e1

MQRankSum
type: SiteQuality
SIO_000300: -3.225e0

QD
type: SiteQuality
SIO_000300: 1.734e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

MQ
type: SiteQuality
SIO_000300: 3.077e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.485e-1

FS
type: SiteQuality
SIO_000300: 8.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

DP
type: SiteQuality
SIO_000300: 1.887405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

GenotypeQuality
all individuals: 1112
bin: 1.25e1
variant carriers: 452

GenotypeQuality
all individuals: 17692
bin: 9.75e1
variant carriers: 6755

GenotypeQuality
all individuals: 3855
bin: 6.75e1
variant carriers: 148

GenotypeQuality
all individuals: 10933
bin: 6.25e1
variant carriers: 164

GenotypeQuality
all individuals: 933
bin: 8.75e1
variant carriers: 123

GenotypeQuality
all individuals: 1250
bin: 5.25e1
variant carriers: 304

GenotypeQuality
all individuals: 2018
bin: 2.25e1
variant carriers: 862

GenotypeQuality
all individuals: 1122
bin: 5.75e1
variant carriers: 148

East Asian
type: Population
allele count: 612
allele frequency: 1.059923796328369e-1
allele num: 5774
num of homozygotes: 60

South Asian
type: Population
allele count: 569
allele frequency: 4.611021069692058e-2
allele num: 12340
num of homozygotes: 25

European (Finnish)
type: Population
allele count: 312
allele frequency: 6.326034063260341e-2
allele num: 4932
num of homozygotes: 13

Latino
type: Population
allele count: 699
allele frequency: 1.41497975708502e-1
allele num: 4940
num of homozygotes: 102

African
type: Population
allele count: 643
allele frequency: 9.297281665702718e-2
allele num: 6916
num of homozygotes: 66

European (Non-Finnish)
type: Population
allele count: 3381
allele frequency: 7.63239875389408e-2
allele num: 44298
num of homozygotes: 252

Other
type: Population
allele count: 44
allele frequency: 6.748466257668712e-2
allele num: 652
num of homozygotes: 3

VQSLOD
type: SiteQuality
SIO_000300: 9.990000000000001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.485e-1

FS
type: SiteQuality
SIO_000300: 8.615e0

MQ
type: SiteQuality
SIO_000300: 3.077e1

MQRankSum
type: SiteQuality
SIO_000300: -3.225e0

QD
type: SiteQuality
SIO_000300: 1.734e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.887405e6

GenotypeQuality
all individuals: 1294
bin: 8.25e1
variant carriers: 212

GenotypeQuality
all individuals: 1434
bin: 2.5e0
variant carriers: 132

GenotypeQuality
all individuals: 1803
bin: 1.75e1
variant carriers: 527

GenotypeQuality
all individuals: 3855
bin: 6.75e1
variant carriers: 243

GenotypeQuality
all individuals: 1141
bin: 9.25e1
variant carriers: 415

GenotypeQuality
all individuals: 17692
bin: 9.75e1
variant carriers: 9130

GenotypeQuality
all individuals: 1377
bin: 4.75e1
variant carriers: 478

GenotypeQuality
all individuals: 1122
bin: 5.75e1
variant carriers: 348

African
type: Population
allele count: 643
allele frequency: 9.297281665702718e-2
allele num: 6916
num of homozygotes: 73

Other
type: Population
allele count: 82
allele frequency: 1.257668711656442e-1
allele num: 652
num of homozygotes: 11

South Asian
type: Population
allele count: 1789
allele frequency: 1.449756888168557e-1
allele num: 12340
num of homozygotes: 282

East Asian
type: Population
allele count: 646
allele frequency: 1.118808451679945e-1
allele num: 5774
num of homozygotes: 125

European (Finnish)
type: Population
allele count: 451
allele frequency: 9.144363341443633e-2
allele num: 4932
num of homozygotes: 38

Latino
type: Population
allele count: 629
allele frequency: 1.273279352226721e-1
allele num: 4940
num of homozygotes: 103

European (Non-Finnish)
type: Population
allele count: 5369
allele frequency: 1.212018601291255e-1
allele num: 44298
num of homozygotes: 760

MQRankSum
type: SiteQuality
SIO_000300: -3.225e0

FS
type: SiteQuality
SIO_000300: 8.615e0

VQSLOD
type: SiteQuality
SIO_000300: 9.990000000000001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.887405e6

QD
type: SiteQuality
SIO_000300: 1.734e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

MQ
type: SiteQuality
SIO_000300: 3.077e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.485e-1

GenotypeQuality
all individuals: 768
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

MQ
type: SiteQuality
SIO_000300: 5.506e1

DP
type: SiteQuality
SIO_000300: 1.771368e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 4.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 1093
bin: 8.75e1
variant carriers: 203

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 339

GenotypeQuality
all individuals: 961
bin: 2.75e1
variant carriers: 555

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 154

GenotypeQuality
all individuals: 2057
bin: 7.25e1
variant carriers: 248

GenotypeQuality
all individuals: 1722
bin: 8.25e1
variant carriers: 237

Latino
type: Population
allele count: 620
allele frequency: 1.243481748896911e-1
allele num: 4986
num of homozygotes: 96

South Asian
type: Population
allele count: 1771
allele frequency: 1.40022137887413e-1
allele num: 12648
num of homozygotes: 287

African
type: Population
allele count: 641
allele frequency: 9.000280819994384e-2
allele num: 7122
num of homozygotes: 75

European (Finnish)
type: Population
allele count: 459
allele frequency: 9.078322784810126e-2
allele num: 5056
num of homozygotes: 42

European (Non-Finnish)
type: Population
allele count: 5372
allele frequency: 1.176212997022246e-1
allele num: 45672
num of homozygotes: 763

Other
type: Population
allele count: 82
allele frequency: 1.216617210682493e-1
allele num: 674
num of homozygotes: 11

East Asian
type: Population
allele count: 656
allele frequency: 1.104005385392124e-1
allele num: 5942
num of homozygotes: 118

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.948e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.37e0

FS
type: SiteQuality
SIO_000300: 4.974e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 6.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 1.77972e6

MQ
type: SiteQuality
SIO_000300: 2.99e1

GenotypeQuality
all individuals: 1752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6167
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.665401393688743e-5
allele num: 35302
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4090
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.575e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.16e-2

DP
type: SiteQuality
SIO_000300: 1.319027e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.108e0

MQ
type: SiteQuality
SIO_000300: 3.607e1

FS
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.178e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 5404
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6167
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4258
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.937984496124031e-3
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.889975550122249e-4
allele num: 4090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.04887770086008e-4
allele num: 9534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.98289048779106e-4
allele num: 35302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQ
type: SiteQuality
SIO_000300: 3.607e1

VQSLOD
type: SiteQuality
SIO_000300: -2.178e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.575e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.16e-2

DP
type: SiteQuality
SIO_000300: 1.319027e6

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 4258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.607e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 1.319027e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.16e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.108e0

FS
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.178e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11779
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.386481802426343e-3
allele num: 5770
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.408e0

FS
type: SiteQuality
SIO_000300: 9.48e-1

DP
type: SiteQuality
SIO_000300: 1.312817e6

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 3.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.564e0

QD
type: SiteQuality
SIO_000300: 1.171e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5966
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.466204506065858e-4
allele num: 5770
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.467468562055768e-4
allele num: 3658
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.675567423230974e-4
allele num: 4494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.903937739574863e-4
allele num: 34436
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.193527783691718e-4
allele num: 9394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.312817e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.408e0

FS
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 3.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.564e0

GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5133
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.810567734682406e-4
allele num: 3558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.750087504375219e-4
allele num: 5714
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.135839384878257e-4
allele num: 9364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.760150199483689e-4
allele num: 34088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.506534474988734e-4
allele num: 4438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.9e1

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.883e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e0

DP
type: SiteQuality
SIO_000300: 1.302991e6

GenotypeQuality
all individuals: 9184
bin: 9.75e1
variant carriers: 5785

GenotypeQuality
all individuals: 724
bin: 5.75e1
variant carriers: 217

GenotypeQuality
all individuals: 1880
bin: 2.5e0
variant carriers: 177

GenotypeQuality
all individuals: 1499
bin: 7.5e0
variant carriers: 696

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 119

GenotypeQuality
all individuals: 694
bin: 9.25e1
variant carriers: 154

GenotypeQuality
all individuals: 11002
bin: 6.25e1
variant carriers: 227

GenotypeQuality
all individuals: 3562
bin: 6.75e1
variant carriers: 194

Latino
type: Population
allele count: 373
allele frequency: 1.066933638443936e-1
allele num: 3496
num of homozygotes: 33

European (Finnish)
type: Population
allele count: 196
allele frequency: 5.112154407929056e-2
allele num: 3834
num of homozygotes: 2

African
type: Population
allele count: 392
allele frequency: 7.18475073313783e-2
allele num: 5456
num of homozygotes: 31

South Asian
type: Population
allele count: 253
allele frequency: 2.758395115569123e-2
allele num: 9172
num of homozygotes: 5

Other
type: Population
allele count: 27
allele frequency: 5.510204081632653e-2
allele num: 490
num of homozygotes: 2

East Asian
type: Population
allele count: 361
allele frequency: 8.223234624145787e-2
allele num: 4390
num of homozygotes: 30

European (Non-Finnish)
type: Population
allele count: 1904
allele frequency: 5.713599807946225e-2
allele num: 33324
num of homozygotes: 134

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 8.739000000000001e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

QD
type: SiteQuality
SIO_000300: 2.479e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.310819e6

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6132
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5508
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.479949e6

VQSLOD
type: SiteQuality
SIO_000300: -3.959e0

QD
type: SiteQuality
SIO_000300: 3.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQ
type: SiteQuality
SIO_000300: 2.9e1

GenotypeQuality
all individuals: 14650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.481481481481481e-4
allele num: 6750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.393e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.777e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 6.8e0

DP
type: SiteQuality
SIO_000300: 1.471639e6

FS
type: SiteQuality
SIO_000300: 1.0403e1

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.340495248794645e-5
allele num: 42726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.744e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.464154e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

QD
type: SiteQuality
SIO_000300: 2.027e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

GenotypeQuality
all individuals: 3223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 9.011715229798738e-4
allele num: 6658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 3.437e1

MQRankSum
type: SiteQuality
SIO_000300: -1.356e0

FS
type: SiteQuality
SIO_000300: 2.326e0

QD
type: SiteQuality
SIO_000300: 6.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.453861e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

GenotypeQuality
all individuals: 2384
bin: 1.25e1
variant carriers: 1039

GenotypeQuality
all individuals: 879
bin: 3.25e1
variant carriers: 115

GenotypeQuality
all individuals: 541
bin: 4.25e1
variant carriers: 91

GenotypeQuality
all individuals: 680
bin: 4.75e1
variant carriers: 95

GenotypeQuality
all individuals: 1990
bin: 7.25e1
variant carriers: 74

GenotypeQuality
all individuals: 1028
bin: 8.75e1
variant carriers: 154

GenotypeQuality
all individuals: 7142
bin: 9.75e1
variant carriers: 1380

GenotypeQuality
all individuals: 1775
bin: 8.25e1
variant carriers: 222

East Asian
type: Population
allele count: 121
allele frequency: 2.290798939795532e-2
allele num: 5282
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 79
allele frequency: 1.636288318144159e-2
allele num: 4828
num of homozygotes: 0

Latino
type: Population
allele count: 122
allele frequency: 2.812355924389119e-2
allele num: 4338
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 707
allele frequency: 1.677740863787375e-2
allele num: 42140
num of homozygotes: 27

African
type: Population
allele count: 127
allele frequency: 1.933617539585871e-2
allele num: 6568
num of homozygotes: 6

Other
type: Population
allele count: 5
allele frequency: 7.961783439490446e-3
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 7.503751875937969e-3
allele num: 11994
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444444e6

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

FS
type: SiteQuality
SIO_000300: 2.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e0

QD
type: SiteQuality
SIO_000300: 1.724e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.303e-1

GenotypeQuality
all individuals: 1124
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5209
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 9.535918626827717e-4
allele num: 6292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.034e0

MQ
type: SiteQuality
SIO_000300: 3.119e1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

QD
type: SiteQuality
SIO_000300: 1.907e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 1.364752e6

GenotypeQuality
all individuals: 12826
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5209
bin: 7.5e0
variant carriers: 36

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1528
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 458
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1057
bin: 9.25e1
variant carriers: 3

Latino
type: Population
allele count: 17
allele frequency: 4.205838693715982e-3
allele num: 4042
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.633986928104575e-3
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.109593717992489e-3
allele num: 11716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.155172413793103e-3
allele num: 4640
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 3.219315895372233e-3
allele num: 4970
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 3.178639542275906e-3
allele num: 6292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 2.129556259904913e-3
allele num: 40384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.034e0

DP
type: SiteQuality
SIO_000300: 1.364752e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.119e1

QD
type: SiteQuality
SIO_000300: 1.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5744
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 866
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.43337e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.272e0

MQ
type: SiteQuality
SIO_000300: 4.528e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 2.708e1

GenotypeQuality
all individuals: 12240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.696e0

DP
type: SiteQuality
SIO_000300: 1.427432e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 799
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11954
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.706e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.932e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

FS
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.396138e6

QD
type: SiteQuality
SIO_000300: 1.699e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 3.644e1

GenotypeQuality
all individuals: 4205
bin: 6.75e1
variant carriers: 318

GenotypeQuality
all individuals: 1573
bin: 8.25e1
variant carriers: 483

GenotypeQuality
all individuals: 900
bin: 9.25e1
variant carriers: 180

GenotypeQuality
all individuals: 11355
bin: 6.25e1
variant carriers: 311

GenotypeQuality
all individuals: 10077
bin: 9.75e1
variant carriers: 6350

GenotypeQuality
all individuals: 1251
bin: 3.75e1
variant carriers: 645

GenotypeQuality
all individuals: 1629
bin: 3.25e1
variant carriers: 893

GenotypeQuality
all individuals: 650
bin: 4.25e1
variant carriers: 325

African
type: Population
allele count: 649
allele frequency: 9.836314034555926e-2
allele num: 6598
num of homozygotes: 80

South Asian
type: Population
allele count: 1475
allele frequency: 1.233896603647315e-1
allele num: 11954
num of homozygotes: 199

Latino
type: Population
allele count: 615
allele frequency: 1.428903345724907e-1
allele num: 4304
num of homozygotes: 89

Other
type: Population
allele count: 73
allele frequency: 1.17363344051447e-1
allele num: 622
num of homozygotes: 10

European (Finnish)
type: Population
allele count: 537
allele frequency: 1.116888519134775e-1
allele num: 4808
num of homozygotes: 42

East Asian
type: Population
allele count: 694
allele frequency: 1.328483920367534e-1
allele num: 5224
num of homozygotes: 96

European (Non-Finnish)
type: Population
allele count: 5309
allele frequency: 1.265795622526346e-1
allele num: 41942
num of homozygotes: 699

FS
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.706e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQ
type: SiteQuality
SIO_000300: 3.644e1

QD
type: SiteQuality
SIO_000300: 1.699e1

DP
type: SiteQuality
SIO_000300: 1.396138e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.932e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 644
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2751
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.030502885408079e-4
allele num: 29112
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.796420581655481e-4
allele num: 3576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2634
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.238638907544213e-4
allele num: 8934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.272e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.364e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.363e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.679e1

FS
type: SiteQuality
SIO_000300: 4.317e0

DP
type: SiteQuality
SIO_000300: 1.381287e6

MQ
type: SiteQuality
SIO_000300: 3.514e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 568
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3149
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 471
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 818
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9725
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1126
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1006
bin: 7.25e1
variant carriers: 2

Latino
type: Population
allele count: 5
allele frequency: 1.898253606681853e-3
allele num: 2634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.172332942555686e-3
allele num: 3412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.677852348993289e-3
allele num: 3576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 1.167903270129156e-3
allele num: 29112
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.827040194884287e-3
allele num: 4926
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.477277815088426e-4
allele num: 8934
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.364e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.679e1

FS
type: SiteQuality
SIO_000300: 4.317e0

DP
type: SiteQuality
SIO_000300: 1.381287e6

VQSLOD
type: SiteQuality
SIO_000300: -6.272e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.363e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 3.514e1

GenotypeQuality
all individuals: 3343
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2618
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2640
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9422
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 9.671179883945841e-4
allele num: 4136
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.493428912783752e-3
allele num: 3348
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.367365542388332e-3
allele num: 4388
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.623844899438304e-4
allele num: 11038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 9.459158691297574e-4
allele num: 35944
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.610017889087657e-3
allele num: 5590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.374691e6

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.699e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 4.386e0

MQ
type: SiteQuality
SIO_000300: 3.732e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.809e-1

QD
type: SiteQuality
SIO_000300: 1.678e1

GenotypeQuality
all individuals: 4933
bin: 2.25e1
variant carriers: 1783

GenotypeQuality
all individuals: 780
bin: 5.75e1
variant carriers: 274

GenotypeQuality
all individuals: 952
bin: 4.75e1
variant carriers: 374

GenotypeQuality
all individuals: 2618
bin: 7.5e0
variant carriers: 1481

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 320

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 480

GenotypeQuality
all individuals: 1945
bin: 2.75e1
variant carriers: 959

GenotypeQuality
all individuals: 3343
bin: 1.75e1
variant carriers: 2616

European (Finnish)
type: Population
allele count: 559
allele frequency: 1.351547388781431e-1
allele num: 4136
num of homozygotes: 51

Latino
type: Population
allele count: 636
allele frequency: 1.899641577060932e-1
allele num: 3348
num of homozygotes: 101

African
type: Population
allele count: 664
allele frequency: 1.18783542039356e-1
allele num: 5590
num of homozygotes: 89

South Asian
type: Population
allele count: 1513
allele frequency: 1.370719333212539e-1
allele num: 11038
num of homozygotes: 228

European (Non-Finnish)
type: Population
allele count: 5498
allele frequency: 1.529601602492766e-1
allele num: 35944
num of homozygotes: 776

Other
type: Population
allele count: 77
allele frequency: 1.394927536231884e-1
allele num: 552
num of homozygotes: 12

East Asian
type: Population
allele count: 730
allele frequency: 1.66362807657247e-1
allele num: 4388
num of homozygotes: 118

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.699e0

FS
type: SiteQuality
SIO_000300: 4.386e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.678e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.374691e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.809e-1

MQ
type: SiteQuality
SIO_000300: 3.732e1

GenotypeQuality
all individuals: 1383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9318
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 4.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.809e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.678e1

MQRankSum
type: SiteQuality
SIO_000300: -2.699e0

MQ
type: SiteQuality
SIO_000300: 3.732e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.374691e6

GenotypeQuality
all individuals: 1945
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9318
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2618
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.564210994880926e-5
allele num: 35944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.811922449719152e-4
allele num: 11038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.699e0

FS
type: SiteQuality
SIO_000300: 4.386e0

DP
type: SiteQuality
SIO_000300: 1.374691e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 3.732e1

QD
type: SiteQuality
SIO_000300: 1.678e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.809e-1

GenotypeQuality
all individuals: 3486
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.849114703618168e-5
allele num: 25980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3034
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 9.46112e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 1944
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 3661
bin: 9.75e1
variant carriers: 194

GenotypeQuality
all individuals: 1689
bin: 3.25e1
variant carriers: 28

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2718
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1146
bin: 3.75e1
variant carriers: 26

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 16
allele frequency: 3.7243947858473e-3
allele num: 4296
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 5.659709939865582e-3
allele num: 5654
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.228866346324968e-4
allele num: 11238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 1.109787786920745e-3
allele num: 36944
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 7.964601769911504e-3
allele num: 3390
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 4.36109899694723e-3
allele num: 4586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.2e1

DP
type: SiteQuality
SIO_000300: 1.050276e6

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 2.047e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

GenotypeQuality
all individuals: 622
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10700
bin: 2.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 9.135200974421437e-4
allele num: 3284
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.818181818181818e-3
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 6.948304613674264e-4
allele num: 35980
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11032
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.039608e6

QD
type: SiteQuality
SIO_000300: 2.233e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

FS
type: SiteQuality
SIO_000300: 3.778e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.675e-1

MQ
type: SiteQuality
SIO_000300: 3.077e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1128
bin: 1.25e1
variant carriers: 283

GenotypeQuality
all individuals: 468
bin: 5.25e1
variant carriers: 27

GenotypeQuality
all individuals: 1508
bin: 2.75e1
variant carriers: 55

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 32

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 29

GenotypeQuality
all individuals: 883
bin: 7.75e1
variant carriers: 42

GenotypeQuality
all individuals: 656
bin: 8.25e1
variant carriers: 19

Latino
type: Population
allele count: 30
allele frequency: 9.135200974421437e-3
allele num: 3284
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 7.927927927927928e-3
allele num: 5550
num of homozygotes: 3

Other
type: Population
allele count: 2
allele frequency: 3.636363636363636e-3
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 4.217432052483599e-3
allele num: 4268
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 5.931458699472759e-3
allele num: 4552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 3.807670928293496e-3
allele num: 35980
num of homozygotes: 2

South Asian
type: Population
allele count: 12
allele frequency: 1.087744742567078e-3
allele num: 11032
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.039608e6

FS
type: SiteQuality
SIO_000300: 3.778e0

MQ
type: SiteQuality
SIO_000300: 3.077e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.675e-1

QD
type: SiteQuality
SIO_000300: 2.233e1

GenotypeQuality
all individuals: 12280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.640794223826715e-5
allele num: 35456
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.97611e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.317e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
all individuals: 537
bin: 7.75e1
variant carriers: 191

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 129

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 199

GenotypeQuality
all individuals: 523
bin: 5.25e1
variant carriers: 347

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 115

GenotypeQuality
all individuals: 9507
bin: 6.25e1
variant carriers: 272

GenotypeQuality
all individuals: 1595
bin: 6.75e1
variant carriers: 232

GenotypeQuality
all individuals: 6528
bin: 9.75e1
variant carriers: 5540

South Asian
type: Population
allele count: 4172
allele frequency: 3.881652400446595e-1
allele num: 10748
num of homozygotes: 1429

Other
type: Population
allele count: 107
allele frequency: 2.011278195488722e-1
allele num: 532
num of homozygotes: 33

East Asian
type: Population
allele count: 879
allele frequency: 2.089871611982882e-1
allele num: 4206
num of homozygotes: 249

European (Finnish)
type: Population
allele count: 666
allele frequency: 1.629158512720157e-1
allele num: 4088
num of homozygotes: 174

African
type: Population
allele count: 474
allele frequency: 8.933283075763288e-2
allele num: 5306
num of homozygotes: 110

Latino
type: Population
allele count: 487
allele frequency: 1.59046374918354e-1
allele num: 3062
num of homozygotes: 147

European (Non-Finnish)
type: Population
allele count: 5607
allele frequency: 1.650865622423743e-1
allele num: 33964
num of homozygotes: 1512

DP
type: SiteQuality
SIO_000300: 9.49617e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 2.24e1

MQ
type: SiteQuality
SIO_000300: 5.586e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.079e0

VQSLOD
type: SiteQuality
SIO_000300: 1.678e1

FS
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.237e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

GenotypeQuality
all individuals: 11959
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11099
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.078817733990148e-5
allele num: 32480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 8.3382e5

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 5.07e0

GenotypeQuality
all individuals: 9064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.406e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.795e1

DP
type: SiteQuality
SIO_000300: 7.92795e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 4954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28030
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.04378e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.772e0

MQ
type: SiteQuality
SIO_000300: 3.732e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.090234857849196e-4
allele num: 3236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.423e0

MQRankSum
type: SiteQuality
SIO_000300: -1.018e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

DP
type: SiteQuality
SIO_000300: 6.74249e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.737e0

QD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.745e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.142857142857143e-4
allele num: 8750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.313691657320335e-5
allele num: 23182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2964
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

DP
type: SiteQuality
SIO_000300: 6.27544e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.183e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQ
type: SiteQuality
SIO_000300: 5.416e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

QD
type: SiteQuality
SIO_000300: 5.66e0

GenotypeQuality
all individuals: 395
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1965
bin: 1.75e1
variant carriers: 197

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1803
bin: 2.75e1
variant carriers: 61

GenotypeQuality
all individuals: 503
bin: 6.75e1
variant carriers: 54

GenotypeQuality
all individuals: 2852
bin: 9.75e1
variant carriers: 582

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 69

GenotypeQuality
all individuals: 276
bin: 7.25e1
variant carriers: 38

East Asian
type: Population
allele count: 57
allele frequency: 2.476107732406603e-2
allele num: 2302
num of homozygotes: 0

African
type: Population
allele count: 94
allele frequency: 3.316866619618913e-2
allele num: 2834
num of homozygotes: 2

Other
type: Population
allele count: 6
allele frequency: 1.657458563535912e-2
allele num: 362
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 2.956521739130435e-2
allele num: 1150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 356
allele frequency: 1.870927054866512e-2
allele num: 19028
num of homozygotes: 4

South Asian
type: Population
allele count: 46
allele frequency: 5.626223091976516e-3
allele num: 8176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 66
allele frequency: 2.773109243697479e-2
allele num: 2380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.437e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.571e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQ
type: SiteQuality
SIO_000300: 2.974e1

FS
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.452e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 6.13716e5

GenotypeQuality
all individuals: 1007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.343593031954686e-5
allele num: 18714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.499e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.92046e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

MQ
type: SiteQuality
SIO_000300: 5.416e1

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5784
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.826254826254826e-4
allele num: 2072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 4.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 6.14689e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.733e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

QD
type: SiteQuality
SIO_000300: 3.244e1

GenotypeQuality
all individuals: 1994
bin: 3.25e1
variant carriers: 402

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 62

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 150

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 46

GenotypeQuality
all individuals: 357
bin: 6.75e1
variant carriers: 75

GenotypeQuality
all individuals: 817
bin: 6.25e1
variant carriers: 94

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 44

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 160

East Asian
type: Population
allele count: 434
allele frequency: 2.094594594594595e-1
allele num: 2072
num of homozygotes: 84

South Asian
type: Population
allele count: 3130
allele frequency: 3.952020202020202e-1
allele num: 7920
num of homozygotes: 1026

Other
type: Population
allele count: 70
allele frequency: 2.134146341463415e-1
allele num: 328
num of homozygotes: 19

African
type: Population
allele count: 273
allele frequency: 1.003676470588235e-1
allele num: 2720
num of homozygotes: 46

European (Finnish)
type: Population
allele count: 332
allele frequency: 1.470327723649247e-1
allele num: 2258
num of homozygotes: 49

Latino
type: Population
allele count: 137
allele frequency: 1.36182902584493e-1
allele num: 1006
num of homozygotes: 26

European (Non-Finnish)
type: Population
allele count: 2893
allele frequency: 1.631881768953068e-1
allele num: 17728
num of homozygotes: 567

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 4.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.733e-1

DP
type: SiteQuality
SIO_000300: 6.14689e5

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

QD
type: SiteQuality
SIO_000300: 3.244e1

GenotypeQuality
all individuals: 3319
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 13846
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5784
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.616e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.733e-1

FS
type: SiteQuality
SIO_000300: 4.219e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

QD
type: SiteQuality
SIO_000300: 3.244e1

DP
type: SiteQuality
SIO_000300: 6.14689e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 106

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 92

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 273

GenotypeQuality
all individuals: 1143
bin: 3.75e1
variant carriers: 573

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 91

GenotypeQuality
all individuals: 312
bin: 6.75e1
variant carriers: 137

GenotypeQuality
all individuals: 192
bin: 7.75e1
variant carriers: 104

GenotypeQuality
all individuals: 7694
bin: 9.75e1
variant carriers: 6231

European (Non-Finnish)
type: Population
allele count: 5910
allele frequency: 3.438445427042122e-1
allele num: 17188
num of homozygotes: 1496

South Asian
type: Population
allele count: 2508
allele frequency: 3.157894736842105e-1
allele num: 7942
num of homozygotes: 742

East Asian
type: Population
allele count: 607
allele frequency: 3.01390268123138e-1
allele num: 2014
num of homozygotes: 158

African
type: Population
allele count: 790
allele frequency: 2.915129151291513e-1
allele num: 2710
num of homozygotes: 191

Other
type: Population
allele count: 131
allele frequency: 4.01840490797546e-1
allele num: 326
num of homozygotes: 44

European (Finnish)
type: Population
allele count: 976
allele frequency: 4.464775846294602e-1
allele num: 2186
num of homozygotes: 270

Latino
type: Population
allele count: 456
allele frequency: 4.550898203592814e-1
allele num: 1002
num of homozygotes: 135

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.202e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

DP
type: SiteQuality
SIO_000300: 6.08599e5

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 2.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
all individuals: 1087
bin: 3.75e1
variant carriers: 42

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 50

GenotypeQuality
all individuals: 285
bin: 6.75e1
variant carriers: 52

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 1870
bin: 3.25e1
variant carriers: 37

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 45

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 64

Other
type: Population
allele count: 6
allele frequency: 2.097902097902098e-2
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 56
allele frequency: 3.19634703196347e-2
allele num: 1752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 293
allele frequency: 2.045518011728567e-2
allele num: 14324
num of homozygotes: 3

Latino
type: Population
allele count: 26
allele frequency: 3.651685393258427e-2
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 3.642086330935252e-2
allele num: 2224
num of homozygotes: 1

South Asian
type: Population
allele count: 41
allele frequency: 5.49597855227882e-3
allele num: 7460
num of homozygotes: 1

East Asian
type: Population
allele count: 52
allele frequency: 3.140096618357488e-2
allele num: 1656
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

FS
type: SiteQuality
SIO_000300: 4.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.816e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 1.586e1

DP
type: SiteQuality
SIO_000300: 5.82131e5

MQ
type: SiteQuality
SIO_000300: 2.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1460
bin: 2.75e1
variant carriers: 48

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 72

GenotypeQuality
all individuals: 5223
bin: 2.5e0
variant carriers: 82

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 50

GenotypeQuality
all individuals: 171
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 776
bin: 6.25e1
variant carriers: 46

African
type: Population
allele count: 79
allele frequency: 3.545780969479354e-2
allele num: 2228
num of homozygotes: 1

Latino
type: Population
allele count: 25
allele frequency: 3.50140056022409e-2
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 4.946524064171123e-3
allele num: 7480
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.408450704225352e-2
allele num: 284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 55
allele frequency: 3.128555176336746e-2
allele num: 1758
num of homozygotes: 0

East Asian
type: Population
allele count: 52
allele frequency: 3.136308805790108e-2
allele num: 1658
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 280
allele frequency: 1.956126868799777e-2
allele num: 14314
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 5.81306e5

FS
type: SiteQuality
SIO_000300: 4.699e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.829e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.359999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 1.652e1

GenotypeQuality
all individuals: 7988
bin: 2.25e1
variant carriers: 0